KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:06 2014 Check: 00 .. Name: ENSTTRP00000005561/1-372 Len: 415 Check: 5382 Weight: 1.00 Name: ENSP00000262426/1-379 Len: 415 Check: 5549 Weight: 1.00 Name: ENSBTAP00000000009/1-415 Len: 415 Check: 1563 Weight: 1.00 Name: bmy_06748T0/1-327 Len: 415 Check: 368 Weight: 1.00 Name: BACU004317/1-354 Len: 415 Check: 4075 Weight: 1.00 // 1 50 ENSTTRP00000005561/1-372 ---------- ---------- ---------- ---MSSAPEK QQPPH----- ENSP00000262426/1-379 ---------- ---------- ---------- ---MSSAPEK QQPPH---GG ENSBTAP00000000009/1-415 DSVGLPPPPP PPPPGSSAAQ SSSGSGGGGS SHPMSSAPEK QQPPHGGGGG bmy_06748T0/1-327 ---------- ---------- ---------- ---MSSAPEK QQPPH----- BACU004317/1-354 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005561/1-372 --GGGGGGGA AMDPASSGPS KAKKTNAGIR RPEKPPYSYI ALIVMAIQSS ENSP00000262426/1-379 GGGGGGGGGA AMDPASSGPS KAKKTNAGIR RPEKPPYSYI ALIVMAIQSS ENSBTAP00000000009/1-415 GGGGGGGGGA AMDPASSGPS KAKKTNAGIR RPEKPPYSYI ALIVMAIQSS bmy_06748T0/1-327 --GGGGGGGA AMDPASSGPS KAKKTNAGIR RPEKPPYSYI ALIVMAIQSS BACU004317/1-354 ---------- -MDPASSGPS KAKKTNAGIR RPEKPPYSYI ALIVMAIQSS 101 150 ENSTTRP00000005561/1-372 PTKRLTLSEI YQFLQSRFPF FRGSYQGWKN SVRHNLSLNE CFIKLPKGLG ENSP00000262426/1-379 PTKRLTLSEI YQFLQSRFPF FRGSYQGWKN SVRHNLSLNE CFIKLPKGLG ENSBTAP00000000009/1-415 PTKRLTLSEI YQFLQSRFPF FRGSYQGWKN SVRHNLSLNE CFIKLPKGLG bmy_06748T0/1-327 PTKRLTLSEI YQFLQSRFPF FRGSYQGWKN SVRHNLSLNE CFIKLPKGLG BACU004317/1-354 PTKRLTLSEI YQFLQSRFPF FRGSYQGWKN SVRHNLSLNE CFIKLPKGLG 151 200 ENSTTRP00000005561/1-372 RPGKGHYWTI DPASEFMFEE GSFRRRPRGF RRKCQALKPM YSMMNGLGFN ENSP00000262426/1-379 RPGKGHYWTI DPASEFMFEE GSFRRRPRGF RRKCQALKPM YSMMNGLGFN ENSBTAP00000000009/1-415 RPGKGHYWTI DPASEFMFEE GSFRRRPRGF RRKCQALKPM YSMMNGLGFN bmy_06748T0/1-327 RPGKGHYWTI DPASEFMFEE GSFRRRPRGF RRKCQALKPM YSMMNGLGFN BACU004317/1-354 RPGKGHYWTI DPASEFMFEE GSFRRRPRGF RRKCQALKPM YSMMNGLGFN 201 250 ENSTTRP00000005561/1-372 HLPDTYSFQG SAGGLSCLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262426/1-379 HLPDTYGFQG SAGGLSCPPN SLALEGGLGM MNGHLPGNVD GMALPSHSVP ENSBTAP00000000009/1-415 HLPDTYSFQG SAGGLSCPPN SLALEGGLGM MNGHLPGNVD GMALPSHSVP bmy_06748T0/1-327 HLPDTYSFQG SAGGLSCPPN SLALEGGLGM MNGHLPGNVD GMALPSHSVP BACU004317/1-354 HLPDTYSFQG SAGGLSCPPN SLALEGGLGM MNGHLPGNVD GMALPSHSVP 251 300 ENSTTRP00000005561/1-372 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262426/1-379 HLPSNGGHSY MGGCGGAAAG EYPHHDSSVP ASPLLPTGAG GVMEPHAVYS ENSBTAP00000000009/1-415 HLPANGGHSY MGSCGGTAAG EYPHHDGSVP ASPLLPAAAG GVMEPHAVYS bmy_06748T0/1-327 HLPANGGHSY MGSCGAAAAG EYPHHDSSVP ASPLLPAAAG GVMEPHAVYS BACU004317/1-354 HLPANGGHSY MGSCGAAAAG EYPHHDSSVP ASPLLPAAAG GVMEPHAVYS 301 350 ENSTTRP00000005561/1-372 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFDSL SRHYEQ---L ENSP00000262426/1-379 GSAAAWPPSA SAALNSGASY IKQQPLSPCN PAANPLSGSL STHSLEQPYL ENSBTAP00000000009/1-415 GSAAAWPPSA SAALNSSASY IKQQPLSPCN PTANPLSGSL STHSLDQPYL bmy_06748T0/1-327 GSAAAWPPSA SAALNSSASY IKQQPLSPCN PAANPLSGSL STHSLDQPYL BACU004317/1-354 GSAAAWPPSA SAALNSSASY IKQQPLSPCN PAANPLSGSL STHSLDQPYL 351 400 ENSTTRP00000005561/1-372 DKHNHNTPAG LQGIPRYHSQ SPSMCDRKEF VFSFNTMASS SMHSAGGGSY ENSP00000262426/1-379 HQNSHNAPAE LQGIPRYHSQ SPSMCDRKEF VFSFNAMASS SMHSAGGGSY ENSBTAP00000000009/1-415 HQNSHNTPAE LQGIPRYHSQ SPSMCDRKEF VFSFNTMASS SMHSAGGGSY bmy_06748T0/1-327 HQNSHNAPAE LQG------- ---------- ---------- ---EWGG--- BACU004317/1-354 HQNSHNAPAE LQGIPRYHSQ SPSMCDRKEF VFSFNTMASS SMHSAGGGSY 401 450 ENSTTRP00000005561/1-372 YHQQVTYQDI KPCVM ENSP00000262426/1-379 YHQQVTYQDI KPCVM ENSBTAP00000000009/1-415 YHQQVTYQDI KPCVM bmy_06748T0/1-327 ---------- ----- BACU004317/1-354 YHQQVTYQDI KPCVM