KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:07 2014 Check: 00 .. Name: ENSTTRP00000006266/1-680 Len: 691 Check: 5485 Weight: 1.00 Name: ENSP00000380401/1-684 Len: 691 Check: 5365 Weight: 1.00 Name: ENSBTAP00000000015/1-681 Len: 691 Check: 6100 Weight: 1.00 Name: bmy_01170T0/1-667 Len: 691 Check: 2466 Weight: 1.00 Name: BACU000868/1-466 Len: 691 Check: 8048 Weight: 1.00 // 1 50 ENSTTRP00000006266/1-680 MGLSAAALLW GLPGLLLTIA LHPALS---- ---VPAHRDY CVLGAGPAGL ENSP00000380401/1-684 MGLSAAAPLW GPPGLLLAIA LHPALS---- ---VPPRRDY CVLGAGPAGL ENSBTAP00000000015/1-681 ---------W GAPGLLLTIA LHLALYLRPA QAWAPVHRDY CVLGAGPAGL bmy_01170T0/1-667 MGLSAAALLW GLPGLLLTIA LHPALSPCPA QASVPAHRDY CVLGAGPAGL BACU000868/1-466 MGLSAAALLW GLPGLLLTIA LHPALSPCPA QASVPAHRDY CVLGAGPAGL 51 100 ENSTTRP00000006266/1-680 QMAYFLQRAG RDYAVFERAP RPGSFFTRYP RHRKLISINK RYTGKANAEF ENSP00000380401/1-684 QMAYFLQRAG RDYAVFERAP RPGSFFTRYP RHRKLISINK RYTGKANAEF ENSBTAP00000000015/1-681 QMAYFLQRAG RDYMVFERAP VPGSFFTRYP RHRKLISINK RYTGKTNAEF bmy_01170T0/1-667 QMAYFLQRAG RDYAVFERAP XPGSFFTRYP RHRKLISINK RYTGKANAEF BACU000868/1-466 QMAYFLQRAG RDYAVFERAP GPGSFFTRYP RHRKLISINK RYTGKANAEF 101 150 ENSTTRP00000006266/1-680 NLRHDWNSLL SHDPRLLFRH YSNAYFPDAG DMVRYLGDFA DRLGLHVLYN ENSP00000380401/1-684 NLRHDWNSLL SHDPRLLFRH YSRAYFPDAR DMVRYLGDFA DTLGLRVQYN ENSBTAP00000000015/1-681 NLRHDWNSLL SHDPRLLFRH YSDAYYPDAN DMVRYLSDFA ERLGLHVLYN bmy_01170T0/1-667 NLRHDWNSLL SHDPRLLFRH YSNAYFPDAG DMVRYLGDFA DRLGLHVLYN BACU000868/1-466 NLRHDWNSLL SHDPRLLFRH YSNAYFPDAG DMVRYLGDFA DRLGLHVLYN 151 200 ENSTTRP00000006266/1-680 TTIAHVTLNK DQRAWNGHYF ILTDQKGQAY QCSVLLVATG LSVPNQVDFP ENSP00000380401/1-684 TTIAHVTLDK DRQAWNGHYF ILTDQKGQVH QCSVLFVATG LSVPNQVDFP ENSBTAP00000000015/1-681 TTIAHVTVNK DRGAWNGHYF ILTDHRGQAY QCSVLLVATG LSVPNQVDFP bmy_01170T0/1-667 TTIAHVTLNK DQRAWNGHYF ILTDQKGQAY QCSVLLVATG LSVPNQVDFP BACU000868/1-466 TTIAHVTLNK DQRAWNGHYF ILTDQKGQAY QCSVLLVATG LSVPNQVDFP 201 250 ENSTTRP00000006266/1-680 GSEYLDGYES VSVDPEDFVG QNVLILGRGN SAFETAENIL GVTNFIHMLS ENSP00000380401/1-684 GSEYAEGYES VSVDPEDFVG QNVLILGRGN SAFETAENIL GVTNFIHMLS ENSBTAP00000000015/1-681 GSEYVDGYES VSVDPKDFEG QNVLILGRGN SAFETAENIF SVTNFIHMLS bmy_01170T0/1-667 GSEYVDGYES VSVDPKDFVG QNVLILGRGN SAFETAENIL GVTNFIHMLS BACU000868/1-466 GSEYVDGYES VSVDPKDFVG QNVLILGRGN SAFETAENIL GVTNFIHMLS 251 300 ENSTTRP00000006266/1-680 RSRVRLSWAT HYVGDLRAIN NGLLDTYQLK SLDGLLESDL TDLAIVKDLE ENSP00000380401/1-684 RSRVRLSWAT HYVGDLRAIN NGLLDTYQLK SLDGLLESDL TDLAILKDSK ENSBTAP00000000015/1-681 RSRVRLSWAT HYVGDLRAIN NGLLDTYQLK SLDGLLESDL TDLAIVKDHK bmy_01170T0/1-667 RSRVRLSWAT HYVGDLRAIN NGLLDTYQLK SLDGLLESDL TDLAVVKDHE BACU000868/1-466 RSRVRLSWAT HYVGDLRAIN NGLLDTYQLK SLDGLLESDL TDLAVVKDHE 301 350 ENSTTRP00000006266/1-680 GKFHVTLKFL LEEG--NRSA DAVPLPQDDN DNFALRVGYD RVIRCLGWNF ENSP00000380401/1-684 GKFHVTPKFF LEEANTNQSA DSITLPQDDN DNFAMRVPYD RVIRCLGWNF ENSBTAP00000000015/1-681 GKFHITLKLF MEEF-FNQSS DAIPLPQDNN DNFAMRVAYD RVIRCLGWKF bmy_01170T0/1-667 GKFHVTLKFF LEEG--NRSA DAVPLPQDDN DNFALRVAYD RVIRCLGWNF BACU000868/1-466 GKFHVTLKFF LEEG--NRSA DAVPLPQDDN DNFALRVAYD RVIRCLGWNF 351 400 ENSTTRP00000006266/1-680 DFSIFSKSLR LSAGGELSKK YPLVKASYES KGSRGLFVLG TASHSVDYRK ENSP00000380401/1-684 DFSIFNKSLR LNSGNAFGKK YPLIRASYES KGSRGLFILG TASHSVDYRK ENSBTAP00000000015/1-681 DFSIFSKSLR LSSGSELSEK YPLVRASYES KGSRGLFILG TASHSVDYRK bmy_01170T0/1-667 DFSIFS---- ---------- ------NYES KGSXGLFVLG TASHSVDYRK BACU000868/1-466 DFSIFSKSLR LSAGGELSKK YPLVKASYES KGSRGLFVLG TASHSVDYRK 401 450 ENSTTRP00000006266/1-680 SAGGFIHGFR YTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000380401/1-684 SAGGFIHGFR YTVRAVHRLL EHRHHSVTWP ATELPITQLT SSIVRRVNEA ENSBTAP00000000015/1-681 SAGGFIHGFR YTVRAVHRLL EQRHHGVAWP STEHPITHLA SAIIRRINEA bmy_01170T0/1-667 SAGGFIHGFR YTVRAVHRLL EQRHHGVIWP STRHPITQLA SAIIRRVNEA BACU000868/1-466 SAGGFIHGFR YTVRAVHRLL EQRHHGVTWP STQHPITQLA SAIIRRVNEA 451 500 ENSTTRP00000006266/1-680 XXXXXXXXXX XXXXXXXXNA TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000380401/1-684 SGLYQMFGVL ADVILLKENS TAFEYLEEFP IQMLAQLETL TGRKAKHGLF ENSBTAP00000000015/1-681 SGLYQMFSVL ADVVLLKENA TTFEYLEEFP MQMLAQLETI TGKRARHGLF bmy_01170T0/1-667 SGLYQMFSVL ADVVLLKENA TAFEYLEEFP MQMLAQLETI TGRRARHGLF BACU000868/1-466 SGLYQMFSVL ADVVLLKE-- ---------- ---------- ---------- 501 550 ENSTTRP00000006266/1-680 XXXXXYGRNF SGPDKDVFFY DRSVGHTEDA WLSNFLHPVI YYYRHLPTEQ ENSP00000380401/1-684 VINMEYGRNF SGPDKDVFFD DRSVGHTEDA WQSNFLHPVI YYYRYLPTEQ ENSBTAP00000000015/1-681 VINMEYGRNY SGPDKDVFFS DRSVGHMEDA WLSNFLHPVI YYYRHLPTEQ bmy_01170T0/1-667 VINMEYGRNF SGPDKDVFFY DRSVGHTEDA WLSNFLHPVI YYYRHLPTEQ BACU000868/1-466 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000006266/1-680 EVRFRPAGWP LPRPTAIHHI VEDFLTDWTA PVGHILPLRR FLENCLDTDL ENSP00000380401/1-684 EVRFRPAHWP LPRPTAIHHI VEDFLTDWTA PIGHILPLRR FLENCLDTDL ENSBTAP00000000015/1-681 EVRFRPAGWP LPRPSALHHV VEDFLTDWTA PVGHILPLRR FLENCLDTDL bmy_01170T0/1-667 EVRFRPAGWP LPRPTAIHHI VEDFLTDWTA PVGHILPLRR FLENCLDTDL BACU000868/1-466 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000006266/1-680 RSFYAESCFL FALTRQKLPP FCQQGYLRTQ GLVGTESLRQ HGVESGLLWD ENSP00000380401/1-684 RSFYAESCFL FALTRQKLPP FCQQGYLRMQ GLVSTESLWQ HRVESRLLRD ENSBTAP00000000015/1-681 RSFYAESCFL FALTHQKLPP FCQQGYLRTQ GLVGTESLRQ HGVESGLLWD bmy_01170T0/1-667 RSFYAESCFL FALTRQKLPP FCQEGYLRTQ GLVGTESLRQ RGVESGLLWD BACU000868/1-466 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000006266/1-680 YATVG--RGV SGQQPGDHGP GQHPLAPGPP VSPFDSNKEE L ENSP00000380401/1-684 YAPTGRRLED SSQQLGDQEP LGSPLAPGPL AQSVDSNKEE L ENSBTAP00000000015/1-681 SATMGQNQGA SDQRPGDHGP GGHPLAPGPP VSPFNSNKEE L bmy_01170T0/1-667 YATVG--RGD SSQQPGDHGP GQHPLAPGPP VSPFESNKEE L BACU000868/1-466 ---------- ---------- ---------- ---------- -