KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:10 2014 Check: 00 .. Name: ENSTTRP00000011111/1-591 Len: 1104 Check: 9490 Weight: 1.00 Name: ENSP00000406191/1-871 Len: 1104 Check: 8255 Weight: 1.00 Name: ENSBTAP00000000034/1-871 Len: 1104 Check: 7815 Weight: 1.00 Name: bmy_08292T0/1-855 Len: 1104 Check: 4501 Weight: 1.00 Name: BACU008384/1-1104 Len: 1104 Check: 839 Weight: 1.00 // 1 50 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000034/1-871 ---------- ---------- ---------- ---------- ---------- bmy_08292T0/1-855 ---------- ---------- ---------- ---------- ---------- BACU008384/1-1104 MALLAEHLLK PLPADKQIET GPFLEAVSHL PPFFDCLGSP VFTPIKLDIS 51 100 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000034/1-871 ---------- ---------- ---------- ---------- ---------- bmy_08292T0/1-855 ---------- ---------- ---------- ---------- ---------- BACU008384/1-1104 GNITKIKAVY DNNPAKFRTL QNILEVEKEM YGAEWPKVGA TLALMWLKRG 101 150 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000034/1-871 ---------- ---------- ---------- ---------- ---------- bmy_08292T0/1-855 ---------- ---------- ---------- ---------- ---------- BACU008384/1-1104 LRFIQVFLQS ICDGERDENH PNLVRVNATK AYEMALKKYH GWIVQKIFQA 151 200 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000034/1-871 ---------- ---------- ---------- ---------- ---------- bmy_08292T0/1-855 ---------- ---------- ---------- ---------- ---------- BACU008384/1-1104 ALYAAPYKSD LLKALSKGQN VTEEECLEKT RLFLVNYTAT IDVIYEMPSS 201 250 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 -------MAD SSEGPRAGPG EVAELPGDES GTPGGEAFPL SSLANLFEGE ENSBTAP00000000034/1-871 -------MAD PGEGPRVGPG EMAESPGDES GPPGGEAFPL SSLANLFEGE bmy_08292T0/1-855 -------MAD PSEGPRVGPG EVAEPPGDES GIPGGEAFPL SSLANLFEGE BACU008384/1-1104 ADRSRGSMAD PSEGPRVGPG EVAEPPGDES GIPGGEAFPL SSLANLFEGE 251 300 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 DGSLSPSPAD ASRPAGPGDG RPNLRMKFQG AFRKGVPNPI DLLESTLYES ENSBTAP00000000034/1-871 DGSPSPSPAD GGRSTGPGDG RPNLRMKFQG AFRKGVPNPI DLLESTLYES bmy_08292T0/1-855 DGSPSPSPAD SGRPAGPGDG RPNLRMKFQG AFRKGVPNPI DLLESTLYES BACU008384/1-1104 DGSPSPSPAD SGRPAGPGDG RPNLRMKFQG AFRKGVPNPI DLLESTLYES 301 350 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 SVVPGPKKAP MDSLFDYGTY RHHSSDNKRW RKKIIEKQPQ SPKAPAPQPP ENSBTAP00000000034/1-871 SVVPGPKKAP MDSLFDYGTY RHHPSDNKRW RRKVIEKQPQ SPKAPAPQPP bmy_08292T0/1-855 SVVPGPKKAP MDSLFDYGTY RQHPSDNKR- ------KQPQ SPKAPTPQPP BACU008384/1-1104 SVVPGPKKAP MDSLFDYGTY RQHPSDNKRW RRKVIEKQPQ SPKAPTPQPP 351 400 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 PILKVFNRPI LFDIVSRGST ADLDGLLPFL LTHKKRLTDE EFR------- ENSBTAP00000000034/1-871 PILKVFNRPI LFDIVSRGST ADLDGLLPFL LTHKKRLTDE EFR------- bmy_08292T0/1-855 PILKVFNRPI LFDIVSRGST ADLDGLLPFL LTHKKRLTDE EFR------- BACU008384/1-1104 PILKVFNRPI LFDIVSRGST ADLDGLLPFL LTHKKRLTDE EFRGLPCKSG 401 450 ENSTTRP00000011111/1-591 ---------- ---------- PSTGKTCLPK ALLNLSNGRN DTIPVLLDIA ENSP00000406191/1-871 ---------- ---------E PSTGKTCLPK ALLNLSNGRN DTIPVLLDIA ENSBTAP00000000034/1-871 ---------- ---------E PSTGKTCLPK ALLNLSNGRN DTIPVLLDIA bmy_08292T0/1-855 ---------- ---------E PSTGKTCLPK ALLNLSNGRN DTIPVLLDIA BACU008384/1-1104 KVACEPLHPI QPPAMCRLPE PSTGKTCLPK ALLNLSNGRN DTIPVLLDIA 451 500 ENSTTRP00000011111/1-591 ERTGNMREFI NSPFRDIYYR GQTALHIAIE RRCKHYVELL VAQGADVHAQ ENSP00000406191/1-871 ERTGNMREFI NSPFRDIYYR GQTALHIAIE RRCKHYVELL VAQGADVHAQ ENSBTAP00000000034/1-871 ERTGNMREFI NSPFRDIYYR GQTALHIAIE RRCKHYVELL VAQGADVHAQ bmy_08292T0/1-855 ERTGNMREFI NSPFRDIYYR GQTALHIAIE RRCKHYVELL VAQGADVHAQ BACU008384/1-1104 DRTGNMREFI NSPFRDIYYR GQTALHIAIE RRCKHYVELL VAQGADVHAQ 501 550 ENSTTRP00000011111/1-591 ARGRFFQPKD EGGYFYFGEL PLSLAACTNQ PHIVNYLTEN PHKKADMRRQ ENSP00000406191/1-871 ARGRFFQPKD EGGYFYFGEL PLSLAACTNQ PHIVNYLTEN PHKKADMRRQ ENSBTAP00000000034/1-871 ARGRFFQPKD EGGYFYFGEL PLSLAACTNQ PHIVNYLTEN PHKKADMRRQ bmy_08292T0/1-855 ARGRFFQPKD EGGYFYFGEL PLSLAACTNQ PHIVNYLTEN PHKKADMRRQ BACU008384/1-1104 ARGRFFQPKD EGGYFYFGEL PLSLAACTNQ PHIVNYLTEN PHKKADMRRQ 551 600 ENSTTRP00000011111/1-591 DSRGNTVLHA LVAIADNTRE NTKFVTKMYD LLLLKCARLF PDSNLEAVLN ENSP00000406191/1-871 DSRGNTVLHA LVAIADNTRE NTKFVTKMYD LLLLKCARLF PDSNLEAVLN ENSBTAP00000000034/1-871 DSRGNTVLHA LVAIADNTRE NTKFVTKMYD LLLLKCARLF PDSNLEAVLN bmy_08292T0/1-855 DSRGNTVLHA LVAIADNTRE NTKFVTKMYD LLLLKCARLF PDSNLEAVLN BACU008384/1-1104 DSRGNTVLHA LVAIADNTRE NTKFVTKMYD LLLLKCARLF PDSNLEAVLN 601 650 ENSTTRP00000011111/1-591 NDGLSPLMMA AKTGKIGIFQ HIIRREVTDE DTRHLSRKFK DWAYGPVYSS ENSP00000406191/1-871 NDGLSPLMMA AKTGKIGIFQ HIIRREVTDE DTRHLSRKFK DWAYGPVYSS ENSBTAP00000000034/1-871 NDGLSPLMMA AKTGKIGIFQ HIIRREVTDE DTRHLSRKFK DWAYGPVYSS bmy_08292T0/1-855 NDGLSPLMMA AKTGKIGIFQ HIIRREVTDE DTRHLSRKFK DWAYGPVYSS BACU008384/1-1104 NDGLSPLMMA AKTGKIGIFQ HIIRREVTDE DTRHLSRKFK DWAYGPVYSS 651 700 ENSTTRP00000011111/1-591 LYDLSSLDTC GEEASVLEIL VYNSKIENRH EMLAVEPINE LLRDXXXXXX ENSP00000406191/1-871 LYDLSSLDTC GEEASVLEIL VYNSKIENRH EMLAVEPINE LLRDKWRKFG ENSBTAP00000000034/1-871 LYDLSSLDTC GEETSVLEIL VYNSKIENRH EMLAVEPINE LLRDKWRKFG bmy_08292T0/1-855 LYDLSSLDTC GEEASVLEIL VYNSKIENRH EMLAVEPINE LLRDKWRKFG BACU008384/1-1104 LYDLSSLDTC GEEASVLEIL VYNSRIENRH EMLAVEPINE LLRDKWRKFG 701 750 ENSTTRP00000011111/1-591 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXHTTVD YLRLAGEIIT ENSP00000406191/1-871 AVSFYINVVS YLCAMVIFTL TAYYQPLEGT PPYPYRTTVD YLRLAGEVIT ENSBTAP00000000034/1-871 AVSFYINVVS YLCAMVIFTL TAYYQPLEGT PPYPYRTTMD YLRLAGEIIT bmy_08292T0/1-855 AVSFYINVAS YLCAMVIFTL TAYYQPLEGT PPYPYLTTVD YLRLAGEIIT BACU008384/1-1104 AVSFYINVAS YLCAMVIFTL TAYYQPLEGT PPYPYLTTVD YLRLAGEIIT 751 800 ENSTTRP00000011111/1-591 LFTGVLFFFT NIKDLFMKKC PGVNSLFIDG SFQLLYFIYS VLVIVSAALY ENSP00000406191/1-871 LFTGVLFFFT NIKDLFMKKC PGVNSLFIDG SFQLLYFIYS VLVIVSAALY ENSBTAP00000000034/1-871 LFTGILFFFT NIKDLFMKKC PGVNSLFIDG SFQLLYFIYS VLVIVSAALY bmy_08292T0/1-855 LFTGVLFFFT NIKDLFMKKC PGVNSLFVDG SFQLLYFIYS VLVIVSAALY BACU008384/1-1104 LFTGVLFFFT NIRDLFMKKC PGVNSLFVDG SFQLLYFIYS VLVIVSAALY 801 850 ENSTTRP00000011111/1-591 LAGIEAYLAV MVFALVLGWM NALYFTRGLK LTGTYSIMIQ KILFKDLFRF ENSP00000406191/1-871 LAGIEAYLAV MVFALVLGWM NALYFTRGLK LTGTYSIMIQ KILFKDLFRF ENSBTAP00000000034/1-871 LAGIEAYLAV MVFALVLGWM NALYFTRGLK LTGTYSIMIQ KILFKDLFRF bmy_08292T0/1-855 LAGIEAYLAV MVFALVLGWM NALYFTRGLK LTGTYSIMIQ KILFKDLFRF BACU008384/1-1104 LAGIEAYLAV MVFALVLGWM NALYFTRGLK LTGTYSIMIQ KILFKDLFRF 851 900 ENSTTRP00000011111/1-591 LLVYLLFMIG YASALVSLLN PCANVKMCSE DHTNCTVPTY PSCRDSETFS ENSP00000406191/1-871 LLVYLLFMIG YASALVSLLN PCANMKVCNE DQTNCTVPTY PSCRDSETFS ENSBTAP00000000034/1-871 LLVYLLFMIG YASALVSLLN PCANLKVCDE DHANCTVPTY PSCRDSETFS bmy_08292T0/1-855 LLVYLLFMIG YAS------- --GELRVPSE DHTNCTVPTY PSCRDSETFS BACU008384/1-1104 LLVYLLFMIG YASALVSLLN PCANMKMCSE DHTNCTVPTY PSCRDSETFS 901 950 ENSTTRP00000011111/1-591 TFLLDLFKLT IGMGDLEMLS STKYPAVFIT LLVTYIILTF VLLLNMLIAL ENSP00000406191/1-871 TFLLDLFKLT IGMGDLEMLS STKYPVVFII LLVTYIILTF VLLLNMLIAL ENSBTAP00000000034/1-871 TFLLDLFKLT IGMGDLEMLS STKYPVVFII LLVTYIILTF VLLLNMLIAL bmy_08292T0/1-855 TFLLDLFKLT IGMGDLEMLS STKYPVVFII LLVTYIILTF VLLLNMLIAL BACU008384/1-1104 TFLLDLFKLT IGMGDLEMLS STKYPVVFII LLVTYIILTF VLLLNMLIAL 951 1000 ENSTTRP00000011111/1-591 MGETVGQVSK ESKHIWKLQW ATTILDIERS FPVFLRKAFR SGEMVTVGKS ENSP00000406191/1-871 MGETVGQVSK ESKHIWKLQW ATTILDIERS FPVFLRKAFR SGEMVTVGKS ENSBTAP00000000034/1-871 MGETVGQVSK ESKHIWKLQW ATTILDIERS FPVFLRKAFR SGEMVTVGKS bmy_08292T0/1-855 MGETVGQVSK ESKHIWKLQW ATTILDIERS FPVFLRKAFR SGEMVTVGKS BACU008384/1-1104 MGETVGQVSK ESKHIWKLQW ATTILDIERS FPVFLRKAFR SGEMVTVGKS 1001 1050 ENSTTRP00000011111/1-591 SDGTPDRRWC F--------- ---------- ---------- ---------- ENSP00000406191/1-871 SDGTPDRRWC FRVDEVNWSH WNQNLGIINE DPGKNETYQY YGFSHTVGRL ENSBTAP00000000034/1-871 SDGTPDRRWC FRVDEVNWSH WNQNLGIINE DPGKNENYQY YGFSHTVGRL bmy_08292T0/1-855 SDGTPDRRWC FRVDEVNWSH WNQNLGIINE DPGKNENYQY YGFSHTVGRL BACU008384/1-1104 SDGTPDRRWC FRVDEVNWSH WNQNLGIINE DPGKNENYQY YGFSHTVGRL 1051 1100 ENSTTRP00000011111/1-591 ---------- ---------- ---------- ---------- ---------- ENSP00000406191/1-871 RRDRWSSVVP RVVELNKNSN PDEVVVPLDS MGNPRCDGHQ QGYPRKWRTD ENSBTAP00000000034/1-871 RRDRWSSVVP RVVELNKNSN PDEVVVPLDN VGNPSCDGHQ QSYPPKWRTD bmy_08292T0/1-855 RRDRWSSVVP RVVELSKNSN PDEVVVPLDN VGNPSCDGHQ KSYAPRWRTD BACU008384/1-1104 RRDRWSSVVP RVVELNKNSN PDEVVVPLDN VGNPSCDGHQ KSYPPRWRTD 1101 1150 ENSTTRP00000011111/1-591 ---- ENSP00000406191/1-871 DAPL ENSBTAP00000000034/1-871 DAPL bmy_08292T0/1-855 DAPL BACU008384/1-1104 DAPL