KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:14 2014 Check: 00 .. Name: ENSBTAP00000000063/1-956 Len: 1650 Check: 2729 Weight: 1.00 Name: ENSP00000357362/1-956 Len: 1650 Check: 1624 Weight: 1.00 Name: BACU007455/1-1539 Len: 1650 Check: 2289 Weight: 1.00 Name: bmy_03382T0/1-1019 Len: 1650 Check: 5587 Weight: 1.00 Name: ENSTTRP00000008956/1-956 Len: 1650 Check: 4163 Weight: 1.00 // 1 50 ENSBTAP00000000063/1-956 METQELRGAL ALLLLCTFVS ASQDLQVIDL LTVGESRQMI AVVEKIRTAL ENSP00000357362/1-956 METQELRGAL ALLLLCFFTS ASQDLQVIDL LTVGESRQMV AVAEKIRTAL BACU007455/1-1539 METQELRGAL ALLLLCTFTS ASQDLQVIDL LTVGESRQMV AVVEKIRTAL bmy_03382T0/1-1019 METQELRGAL ALLLLCTFTS ASQDLQVIDL LTVGESRQMV AVVEKIRTAL ENSTTRP00000008956/1-956 METQELRGAL ALLLLCTFTS ASQDLQVIDL LTVGESRQMV AVVEKIRTAL 51 100 ENSBTAP00000000063/1-956 LTTGDIYLLS TFRLPPKQGG VLFGLYSRHD NTRWLEASVV GKINKVLVRY ENSP00000357362/1-956 LTAGDIYLLS TFRLPPKQGG VLFGLYSRQD NTRWLEASVV GKINKVLVRY BACU007455/1-1539 LTAGDIYLLS TFRLPPKQGG VLFGLYSRQD NTRWLEASVV GKINKVLVRY bmy_03382T0/1-1019 LTAGDIYLLS TFRLPPKQGG VLFGLYSRQD NTRWLEASVV GKINKVLVRY ENSTTRP00000008956/1-956 LTAGDIYLLS TFRLPPKQGG VLFGLYSRQD NTRWLEASVV GKINKVLVRY 101 150 ENSBTAP00000000063/1-956 QREDGKVHAV NLQQAGLADG RTHTALLRLR GPSKPSPALQ LYVDCKLGDQ ENSP00000357362/1-956 QREDGKVHAV NLQQAGLADG RTHTVLLRLR GPSRPSPALH LYVDCKLGDQ BACU007455/1-1539 QREDGKVHAV NLQQAGLADG RTHTALLRLR GPSRPSPALQ LYVDCKLGDQ bmy_03382T0/1-1019 QREDGKVHAV NLQQAGLADG RTHTALLRLR GPSRPSPALQ LYVDCKLGDQ ENSTTRP00000008956/1-956 QREDGKVHAV NLQQAGLADG RTHTALLRLR GPSRPSPALH LYVDCKLGDQ 151 200 ENSBTAP00000000063/1-956 HAGLPALAPI PPAEVNGLEI RTGQKAYLRM QGFVESMKMI LGGSMARVGA ENSP00000357362/1-956 HAGLPALAPI PPAEVDGLEI RTGQKAYLRM QGFVESMKII LGGSMARVGA BACU007455/1-1539 HAGLPALAPI PPAEVSGLEI RTGQKAYLRM QGFVESMKMI LGGSMARVGA bmy_03382T0/1-1019 HAGLPALAPI PPAEVSGLEI RTGQKAYLRM QGFVESMKMI LGGSMARVGA ENSTTRP00000008956/1-956 HAGLPALAPI PPAEVSGLEI RTGQKAYLRM QGFVESMKMI LGGSMARVGA 201 250 ENSBTAP00000000063/1-956 LSECPFQGDE SIHSAVTNAL HSILGEQTKA LVTQLTLFNQ ILVELRDDIR ENSP00000357362/1-956 LSECPFQGDE SIHSAVTNAL HSILGEQTKA LVTQLTLFNQ ILVELRDDIR BACU007455/1-1539 LSECPFQGDE SIHSAVTNAL HSILGEQTKA LVTQLTLFNQ ILVELRDDIR bmy_03382T0/1-1019 LSECPFQGDE SIHSAVANAL HSILGEQTKA LVTQLTLFNQ ILVELRDDIR ENSTTRP00000008956/1-956 LSECPFQGDE SIHSAVANAL HSILGEQTKA LVTQLTLFNQ ILVELRDDIR 251 300 ENSBTAP00000000063/1-956 DQVKEMSLIR NTIMECQVCG FHEQRSHCSP NPCFRGVDCM EVYEYPGYRC ENSP00000357362/1-956 DQVKEMSLIR NTIMECQVCG FHEQRSHCSP NPCFRGVDCM EVYEYPGYRC BACU007455/1-1539 DQVKEMSLIR NTIMECQVCG FHEQRSHCSP NPCFRGVDCM EVYEYPGYRC bmy_03382T0/1-1019 DQVKEMSLIR NTIMECQVCG FHEQRSHCSP NPCFRGVDCM EVYEYPGYRC ENSTTRP00000008956/1-956 DQVKEMSLIR NTIMECQVCG FHEQRSHCSP NPCFRGVDCM EVYEYPGYRC 301 350 ENSBTAP00000000063/1-956 GPCPPGLQGN GTHCTDINEC AHADPCFPGS SCINTMPGFH CEACPRGYKG ENSP00000357362/1-956 GPCPPGLQGN GTHCSDINEC AHADPCFPGS SCINTMPGFH CEACPRGYKG BACU007455/1-1539 GPCPPGLQGN GTHCTDINEC AHADPCFPGS SCVNTMPGFH CEACPRGYKG bmy_03382T0/1-1019 GPCPPGLQGN GTHCTDINEC AHADPCFPGS SCVNTMPGFH CEACPRGYKG ENSTTRP00000008956/1-956 GPCPPGLQGN GTHCTDINEC AHADPCFPGS SCVNTMPGFH CEACPRGYKG 351 400 ENSBTAP00000000063/1-956 TRVSGVGIDY ARASKQVCND VDECNDGNNG GCDPNSICTN TVGSFKCGPC ENSP00000357362/1-956 TQVSGVGIDY ARASKQVCND IDECNDGNNG GCDPNSICTN TVGSFKCGPC BACU007455/1-1539 TRVSGVGIDY ARASKQVCND IDECNDGNNG GCDPNSICTN TVGSFKCGPC bmy_03382T0/1-1019 TRVSGVGIDY ARASKQVCND IDECNDGNNG GCDPNSICTN TVGSFKCGPC ENSTTRP00000008956/1-956 TRVSGVGIDY ARASKQVCND IDECNDGNNG GCDPNSICTN TVGSFKCGPC 401 450 ENSBTAP00000000063/1-956 RLGFVGNQSQ GCFPARTCHS PAHSPCHAHA HCLFERNGAV SCACNVGWAG ENSP00000357362/1-956 RLGFLGNQSQ GCLPARTCHS PAHSPCHIHA HCLFERNGAV SCQCNVGWAG BACU007455/1-1539 RLGFLGNQSQ GCFPARTCHS PTHSPCHVHA HCLFERNGAV SCS------- bmy_03382T0/1-1019 RLGFLGNQSQ GCFPARTCHS PTHSPCHVHA HCLFEHNGAV SCSCNVGWAG ENSTTRP00000008956/1-956 RLGFLGNQSQ GCFPARTCHS PTHSPCHVHA HCLFERNGAV SCSCNVGWAG 451 500 ENSBTAP00000000063/1-956 NGNVCGPDTD IDGYPDQALP CMDNNKHCKQ DNCLLTPNSG QEDADNDGVG ENSP00000357362/1-956 NGNVCGTDTD IDGYPDQALP CMDNNKHCKQ DNCLLTPNSG QEDADNDGVG BACU007455/1-1539 ---------- ---------- ---------- DNCLLTPNSG QEDADNDGVG bmy_03382T0/1-1019 NGNVCGPDTD IDGYPDQALP CMDNNKHCKQ DNCLLTPNSG QEDADNDGVG ENSTTRP00000008956/1-956 NGNVCGPDTD IDGYPDQALP CMDNNKHCKQ DNCLLTPNSG QEDADNDGVG 501 550 ENSBTAP00000000063/1-956 DQCDDDADGD GIKNVEDNCR LFPNKDQQNS DTDSFGDACD NCPNVPNNDQ ENSP00000357362/1-956 DQCDDDADGD GIKNVEDNCR LFPNKDQQNS DTDSFGDACD NCPNVPNNDQ BACU007455/1-1539 DQCDDDADGD GIKNVEDNCR LFPNKDQQNS DTDSFGDACD NCPNVPNNDQ bmy_03382T0/1-1019 DQCDDDADGD GIKNVEDNCR LFPNKDQQNS DTDSFGDACD NCPNVPNNDQ ENSTTRP00000008956/1-956 DQCDDDADGD GIKNVEDNCR LFPNKDQQNS DTDSFGDACD NCPNVPNNDQ 551 600 ENSBTAP00000000063/1-956 KDTDGNGEGD ACDNDVDGDG IPNGLDNCPK VPNPLQTDRD EDGVGDACDS ENSP00000357362/1-956 KDTDGNGEGD ACDNDVDGDG IPNGLDNCPK VPNPLQTDRD EDGVGDACDS BACU007455/1-1539 KDTDGNGEGD ACDNDVDGDG IPNGLDNCPK VPNPLQTDRD EDGVGDACDS bmy_03382T0/1-1019 KDTDGNGEGD ACDNDVDGDG IPNGLDNCPK VPNPLQTDRD EDGVGDACDS ENSTTRP00000008956/1-956 KDTDGNGEGD ACDNDVDGDG IPNGLDNCPK VPNPLQTDRD EDGVGDACDS 601 650 ENSBTAP00000000063/1-956 CPEMSNPTQT DADSDLVGDA CDTNEDSDGD GHQDTKDNCP QLPNSSQLDS ENSP00000357362/1-956 CPEMSNPTQT DADSDLVGDV CDTNEDSDGD GHQDTKDNCP QLPNSSQLDS BACU007455/1-1539 CPEMSNPTQT DADSDLVGDV CDTNEDSDGD GHQDTKDNCP QLPNSSQLDS bmy_03382T0/1-1019 CPEMSNPTQT DADSDLVGDV CDTNEDSDGD GHQDTKDNCP QLPNSSQLDS ENSTTRP00000008956/1-956 CPEMSNPTQT DADSDLVGDV CDTNEDSDGD GHQDTKDNCP QLPNSSQLDS 651 700 ENSBTAP00000000063/1-956 DNDGLGDECD GDDDNDGVPD YVPPGPDNCR LVPNPNQKDS D--------- ENSP00000357362/1-956 DNDGLGDECD GDDDNDGIPD YVPPGPDNCR LVPNPNQKDS D--------- BACU007455/1-1539 DNDGLGDECD GDDDNDGVPD YVPPGPDNCR LVPNPNQKDS D--------- bmy_03382T0/1-1019 DNDGLGDECD GDDDNDGVPD YVPPGPDNCR LVPNPNQKDS DGKAGVPRGL ENSTTRP00000008956/1-956 DNDGLGDECD GDDDNDGVPD YMPPGPDNCR LVPNPNQKDS D--------- 701 750 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 ---------- ---------- ---------- ---------- ---------- bmy_03382T0/1-1019 GWHGLCSGRS GRPCWGVREG RVVERGRHLK AREVVVLATG SGQGLPEHLA ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000000063/1-956 ----GDGVGD VCEDDFDNDA VVDPLDVCPE SAEVTLTDFR AYQTVVLDPE ENSP00000357362/1-956 ----GNGVGD VCEDDFDNDA VVDPLDVCPE SAEVTLTDFR AYQTVVLDPE BACU007455/1-1539 ----GNGVGD VCEDDFDNDA VVDPLDVCPE SAEVTLTDFR AYQTVVLDPE bmy_03382T0/1-1019 SPCPGNGVGD VCEDDFDNDA VVDPLDVCPE SAEVTLTDFR AYQTVVLDPE ENSTTRP00000008956/1-956 ----GNGVGD VCEDDFDNDA VVDPLDVCPE SAEVTLTDFR AYQTVVLDPE 801 850 ENSBTAP00000000063/1-956 GDAQIDPNWV VLNQGMEIVQ TMNSDPGLAV GYTAFNGVDF EGTFHVNTVT ENSP00000357362/1-956 GDAQIDPNWV VLNQGMEIVQ TMNSDPGLAV GYTAFNGVDF EGTFHVNTVT BACU007455/1-1539 GDAQIDPNWV VLNQGMEIVQ TMNSDPGLAV GYTAFNGVDF EGTFHVNTVT bmy_03382T0/1-1019 GDAQIDPNWV VLNQGMEIVQ TMNSDPGLAV GYTAFNGVDF EGTFHVNTVT ENSTTRP00000008956/1-956 GDAQIDPNWV VLNQGMEIVQ TMNSDPGLAV GYTAFNGVDF EGTFHVNTVT 851 900 ENSBTAP00000000063/1-956 DDDYAGFLFS YQDSGRFYVV MWKQTEQTYW QATPFRAVAQ PGLQLKAVTS ENSP00000357362/1-956 DDDYAGFLFS YQDSGRFYVV MWKQTEQTYW QATPFRAVAQ PGLQLKAVTS BACU007455/1-1539 DDDYAGFLFS YQDSGRFYVV MWKQTEQTYW QATPFRAVAQ PGLQLKAVTS bmy_03382T0/1-1019 DDDYAGFLFS YQDSGRFYVV MWKQTEQTYW QATPFRAVAQ PGLQLKAVTS ENSTTRP00000008956/1-956 DDDYAGFLFS YQDSGRFYVV MWKQTEQTYW QATPFRAVAQ PGLQLKAVTS 901 950 ENSBTAP00000000063/1-956 VSGPGEHLRN ALWHTGNTPD QVRLLWTDPR NVGWRDKTSY RWQLLHRPQV ENSP00000357362/1-956 VSGPGEHLRN ALWHTGHTPD QVRLLWTDPR NVGWRDKTSY RWQLLHRPQV BACU007455/1-1539 VSGP------ -----GHTPD QVRLLWTDPR NVGWRDKTSY RWQLLHRPQV bmy_03382T0/1-1019 VSGPGEHLRN ALWHTGHTPD QVRLLWTDPR NVGWRDKTSY RWQLLHRPQV ENSTTRP00000008956/1-956 VSGPGEHLRN ALWHTGHTPD QVRLLWTDPR NVGWRDKTSY RWQLLHRPQV 951 1000 ENSBTAP00000000063/1-956 GYIRVKLYEG PQLVADSGVI IDTSMRGGRL GVFCFSQENI IWSNLQYRCN ENSP00000357362/1-956 GYIRVKLYEG PQLVADSGVI IDTSMRGGRL GVFCFSQENI IWSNLQYRCN BACU007455/1-1539 GYIRVKLYEG SQLVADSGVI IDTSMRGGRL GVFCFSQENI IWSNLQYRCN bmy_03382T0/1-1019 GYIRVKLYEG SQLVADSGVI IDTSMRGGRL GVFCFSQENI IWSNLQYRCN ENSTTRP00000008956/1-956 GYIRVKLYEG SQLVADSGVI IDTSMRGGRL GVFCFSQENI IWSNLQYRCN 1001 1050 ENSBTAP00000000063/1-956 DT-------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 DT-------- ---------- ---------- ---------- ---------- BACU007455/1-1539 AATNPTLTIF LTVSGTSSSS TQALSDQSTS PRATSGASSP TTSPASGSAA bmy_03382T0/1-1019 DT-------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 DT-------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 PPVHGGTSPR ATSGASSPTT SPASGSAAPP VHGGTSPRAT SGASSPTTSP bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 ASGSAAPPVH GGTSPRATSG ASSPTTSPAS GSAAPPVHGG TSPRATSGAS bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 SPTTSPASGS AAPPVHGGTS PRATSGASSP TTSPASGSAA PPVHGGTSPR bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 ATSGASSPTT SPASGSAAPP VHGGTSPRAT SGASSPTTSP ASGSAAPPVH bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 GGTSPRATSG ASSPTTSPAS GSAAPPVHGG TSPRATSGAS SPTTSPASGS bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 AAPPVHGGTS PRATSGASSP TTSPASGSAA PPVHGGTSPR ATSGASSPTT bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 SPASGSAAPP VHGGTSPRAT SGASSPTTSP ASGSAAPPVH GGTSPRATSG bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000000063/1-956 ---------- ---------- -VP------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- -VP------- ---------- ---------- BACU007455/1-1539 ASSPTASHIT RTIASSTNQS IVPPTSSSHK TSQQLPIRVS LFFLSFHITN bmy_03382T0/1-1019 ---------- ---------- -VP------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- -VP------- ---------- ---------- 1451 1500 ENSBTAP00000000063/1-956 ---------- ---------- ---------- --EDF----- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- --EDF----- ---------- BACU007455/1-1539 LQFNSSLENP STSYYQKLQR SISVLFVQTY KQEDFLGLLG IKFRPGSVVV bmy_03382T0/1-1019 ---------- ---------- ---------- --EDF----- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- --EDF----- ---------- 1501 1550 ENSBTAP00000000063/1-956 ---------- --EPFRRQL- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- --EPFRRQL- ---------- ---------- ---------- BACU007455/1-1539 ELTLAFREGT TAHNLERQLG QLEAAAVKYN LTISGVSVRD ASFPSSAQSG bmy_03382T0/1-1019 ---------- --EPFRRQL- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- --EPFRRQL- ---------- ---------- ---------- 1551 1600 ENSBTAP00000000063/1-956 ---------- ---------- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- ---------- ---------- ---------- ---------- BACU007455/1-1539 SGVPGWGIAL LVLVCVLVAL AIIYLIALVV CQCRQKNYGQ LDLFPTRDAY bmy_03382T0/1-1019 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000000063/1-956 ---------- LQGRV----- ---------- ---------- ---------- ENSP00000357362/1-956 ---------- LQGRV----- ---------- ---------- ---------- BACU007455/1-1539 HPMSEYPTYH THGRYVPPGS TKRSPFEEVS AGNGGSTLSY ANLAATSANL bmy_03382T0/1-1019 ---------- LQERV----- ---------- ---------- ---------- ENSTTRP00000008956/1-956 ---------- LQERV----- ---------- ---------- ----------