KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:17 2014 Check: 00 .. Name: ENSTTRP00000012243/1-272 Len: 302 Check: 8264 Weight: 1.00 Name: ENSP00000368140/1-301 Len: 302 Check: 8556 Weight: 1.00 Name: ENSBTAP00000000072/1-302 Len: 302 Check: 1472 Weight: 1.00 Name: bmy_14746T0/1-191 Len: 302 Check: 8357 Weight: 1.00 Name: BACU014770/1-191 Len: 302 Check: 8794 Weight: 1.00 // 1 50 ENSTTRP00000012243/1-272 MLASRVARTS WGALRVAVWA PGARPGKGRA RGALLPPVPC CLGCLAERWW ENSP00000368140/1-301 MLALRVARGS WGALRGAAWA PGTRPSKRRA CWALLPPVPC CLGCLAERWR ENSBTAP00000000072/1-302 MLASRMARAS WGALRVAAWA PGARPGKGRA RGALLPPAPG CLGFLAERWW bmy_14746T0/1-191 MLASRVARAS WGALRVAVWA PGARPGKGRA RGALLPPVPC CLGCLAERWW BACU014770/1-191 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012243/1-272 LRPAALGLRL PGASPRAHCS GAGKAAPGPA VQEDAATEAR GGRWGPASAA ENSP00000368140/1-301 LRPAALGLRL PGIGQRNHCS GAGKAAPRPA AGAGAAAEAP GGQWGPASTP ENSBTAP00000000072/1-302 LRPAALGLRL PGASPRAHCS GAEKATPGPA TGEDATVEAR RGQWGPTSAS bmy_14746T0/1-191 LRPAALGLRL PGASPRAHCS GAGKAAPGPA AEKDAATEPR GGRWGPASAA BACU014770/1-191 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012243/1-272 SLYENPWTIP NMLSMTRIG- APVLGYLXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368140/1-301 SLYENPWTIP NMLSMTRIGL APVLGYLIIE EDFNIALGVF ALAGLTDLLD ENSBTAP00000000072/1-302 NLYENPWTIP NMLSMTRIGL APVLGYLIIE EDFNIALGVF ALAGLTDLLD bmy_14746T0/1-191 SLYENPWTIP NMLSMTRIGL APVLGYLIIE EDFNIALGVF ALAGLTDLLD BACU014770/1-191 ---------- -MLSMTRIGL APVLGYLIIE EDFNIALGVF ALAGLTDLLD 151 200 ENSTTRP00000012243/1-272 XXXARNWANQ KSALGSALDP LADKILISIL YVSLTYADLI PVPLTYMIIS ENSP00000368140/1-301 GFIARNWANQ RSALGSALDP LADKILISIL YVSLTYADLI PVPLTYMIIS ENSBTAP00000000072/1-302 GFIARNWASQ KSALGSALDP LADKILISIL YISLTYADLI PVPLTYMIIS bmy_14746T0/1-191 GFIARNWASQ KSALGSALDP LADKILISIL YVSLTYADLI P--------- BACU014770/1-191 GFIARNWASQ KSALGSALDP LADKILISIL YVSLTYADLI PVPLTYMIIS 201 250 ENSTTRP00000012243/1-272 RDVMLIAAVF YIRYRTLPTP RTLSKYFNPC YATARLKPTF ISKVNTAVQL ENSP00000368140/1-301 RDVMLIAAVF YVRYRTLPTP RTLAKYFNPC YATARLKPTF ISKVNTAVQL ENSBTAP00000000072/1-302 RDVMLIAAVF YVRYRTLPTP RTLSKYFNPC YATARLKPTF ISKVNTAVQL bmy_14746T0/1-191 ---------- ---------- ---------- ---------- ---------- BACU014770/1-191 RDVMLIAAVF YVRYRTLPTP RTLSKYFNPC YATARLKPTF ISKVNTAVQL 251 300 ENSTTRP00000012243/1-272 ILVAASLAAP VFNYADSIYL QIL------- ---------- ---------- ENSP00000368140/1-301 ILVAASLAAP VFNYADSIYL QILWCFTAFT TAASAYSYYH YGRKTVQVIK ENSBTAP00000000072/1-302 ILVAASLAAP VFNYADSIYL QILWCFTAFT TAASAYSYYH YGRKTVQVIK bmy_14746T0/1-191 ---------- ---------- ---------- ---------- ---------- BACU014770/1-191 ILVAASLAAP VFNYADSIYL QILWCLTAFT TAASAYSYYH YGRKTVQVIK 301 350 ENSTTRP00000012243/1-272 -- ENSP00000368140/1-301 D- ENSBTAP00000000072/1-302 GR bmy_14746T0/1-191 -- BACU014770/1-191 GR