KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:17 2014 Check: 00 .. Name: ENSP00000368135/1-740 Len: 784 Check: 8607 Weight: 1.00 Name: ENSBTAP00000000073/1-728 Len: 784 Check: 7900 Weight: 1.00 Name: bmy_14744T0/1-740 Len: 784 Check: 1149 Weight: 1.00 Name: BACU014771/1-723 Len: 784 Check: 7616 Weight: 1.00 Name: ENSTTRP00000012251/1-729 Len: 784 Check: 9306 Weight: 1.00 // 1 50 ENSP00000368135/1-740 M------RQT LPLLLLTVLR PSWADPPQEK VPLFRVTQQG PWGSSGSNAT ENSBTAP00000000073/1-728 MWW----ALL LLLPFAIAPR PSQAGPLQ-N SLVFRLTQQG PWGSGAGNST bmy_14744T0/1-740 MWWTP--LLL LLLLLSTAPR PSRAGPLQ-K APVFQLTHQG PWGSGVGNAT BACU014771/1-723 MWWTPLLLLL LLLLLSTAPR PSRAGPLQ-K APVFQLTHQG PWGSGVGNAT ENSTTRP00000012251/1-729 MWWD---LLV LLLLPWTAPR PSRAGPLQ-K APVFQLTHQG PWGSGAGNAT 51 100 ENSP00000368135/1-740 DSPCEGLPAA DATALTLANR NLERLPGCLP RTLRSLDASH NLLRALSTSE ENSBTAP00000000073/1-728 VSPCEWLPVA GVTTLTFVNR GLERLPGCLP RALRSLDGSH NLLRALSAPE bmy_14744T0/1-740 VSPCEGLPAA GVTTLTLANR GLERLPGCLP RALHSLDGSH NLLRALSAPE BACU014771/1-723 VSPCEGLPAA GVTTLTLANR GLERLPGCLP RALRSLDGSH NLLRALSAPE ENSTTRP00000012251/1-729 VSPCEGLPAA GVTTLTLTNR SLERLPGCLP RALHSLDGSH NLLRALSAPE 101 150 ENSP00000368135/1-740 LGHLEQLQVL TLRHNRIAAL RWGPGGPAGL HTLDLSYNQL AALPPCTGPA ENSBTAP00000000073/1-728 LGHLPQLQVL TLRHNRITAL GWGPGAPAGL HSLDLSYNLL ATLPPCTGPA bmy_14744T0/1-740 LGHLPRLQVL TLRHNRIAAL RWGPGAPAGL HTLDLSYNLL EALPPCSGPV BACU014771/1-723 LGHLPRLQVL TLRHNRIAVL RWGPGAPAGL HTLDLSYNLL EALPPCSGPV ENSTTRP00000012251/1-729 LGHLPRLQVL TLRHNRIAAL RWGPGAPAGL HTLDLSYNLL EAL-PCSGPV 151 200 ENSP00000368135/1-740 LSSLRALALA GNPLRALQPR AFACFPALQL LNLSCTALGR GAQGGIAEAA ENSBTAP00000000073/1-728 LPGLRALALA GNPLRTLQPG AFACFPELRL LNLSYTKLGR GDHEDIADAT bmy_14744T0/1-740 LPGLRTLALA GNPLRALQTG AFACFPALRL LNLSCTALGR GDHAGIADAA BACU014771/1-723 LPGLRTLALA GNPLRALQTG AFACFPALRL LNLSCTALGR GDHAGIADAA ENSTTRP00000012251/1-729 LPGLRTLA-A GNPLRALQ-R SF-CFPAL-L LNV-CTALGR GDHAGIADA- 201 250 ENSP00000368135/1-740 FAGEDGAPLV TLEVLDLSGT FLER------ ----VESGWI RDLPKLTSLY ENSBTAP00000000073/1-728 FAGVGGAPLA ALQVLDLSGT FLPR------ ----VRSGWI RNLPRLTSLY bmy_14744T0/1-740 FTGAGGAPLA ALEVLDLSGT FLRRGSGQFP LCVSVQSGWI RDLPKLTSLY BACU014771/1-723 FTGAGGAPLA ALEVLDLSGT FLRR------ ----VQSGWI RDLPKLTSLY ENSTTRP00000012251/1-729 FAGAGGAPLA ALEVLDLSGT FLRR------ ----VQSGWI RDLPKLTSLY 251 300 ENSP00000368135/1-740 LRKMPRLTTL EGDIFKMTPN LQQLDCQDSP ALASVATHIF QDTPHLQVLL ENSBTAP00000000073/1-728 LRKMPRLRSL EGDIFKMTPD LQHLDCQHSP ALSSVHTYIF QDTPHLRVLH bmy_14744T0/1-740 LRKMPRLNSL EGHIFKVTPD LQQLDCQDSP ALTSVHTHIF QDTPLLQVLH BACU014771/1-723 LRKMPRLNSL EGDIFKVTPD LQQLDCQDSP ALTSVHTHIF QDTPLLQVLH ENSTTRP00000012251/1-729 LRKMPRLNSL EGDIFKVTPD LQQLDCQDSP ALTSVHTHIF QDTPLLQVLH 301 350 ENSP00000368135/1-740 FQNCNLSSFP PWTLDSSQVL SINLFGNPLT CSCDLSWLLT DAKRTVLSRA ENSBTAP00000000073/1-728 FQNCNLSSFH PWNLHSSQVL SINLFGNPLT CSCELSWLLM DAKRIVLSRA bmy_14744T0/1-740 FQNCNLSSFP PWNLHSSQVL SINLFGNPLT CSCELSWLLM DAKRIVLSRA BACU014771/1-723 FQ-------- ---------- ---------- ---------- --------KA ENSTTRP00000012251/1-729 FQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA 351 400 ENSP00000368135/1-740 ADTMCAPAAG SSGPFSASLS LSQLPGVCQS DQSTTLGASH PPCFNRSTY- ENSBTAP00000000073/1-728 ADIVCKPAAG SSGTFSAPLL LSQLPSVCHS DQNTTLLDSN PPSSVISTHT bmy_14744T0/1-740 ADTVCTPAAG SSGTFSAPLL LSQLPSVCHS DQNTTFLDSN PPSSVFSTHT BACU014771/1-723 ADTVCTPAAG SSGTFSAPLL LSQLPSACHS DQNTTFLDSN PPASVFSTHT ENSTTRP00000012251/1-729 ADTVCTPGAG SSGTFSAPLL LSQLPSVCHS DQNTTFLDSN PPSSVFSTHT 401 450 ENSP00000368135/1-740 --AQGTTVAP SAAPATRPAG DQQSVSKAPN --VGSRTIAA WP-HSDAREG ENSBTAP00000000073/1-728 PSAQGSSTLR STTPSTTPAG GQQSVTRFPS LPVDSPTRAA RLRYSLAKDG bmy_14744T0/1-740 PSTQGPSTLR STAPSTQSAG GRPSVTKVPS LPVDSPTRAA GPRHSLAEDG BACU014771/1-723 PSTQGPSTLR STAPSTQSAG GRQSVTKVPS LPVDPPTRAA GPRHSLAEDG ENSTTRP00000012251/1-729 PSTQGPSTLR RTVPSTQCAG GRHSVTKVPS LPVDSPTQAA GPRHSLAEEG 451 500 ENSP00000368135/1-740 TAPSTTNSVA GHSNSSVFPR AASTTRTQHR GEHAPELVLE PDISAASTPL ENSBTAP00000000073/1-728 ATPSTTVSPT GSSNSGDPPK SVSTAWAEHQ -EYATGLILE PSSSAASIPW bmy_14744T0/1-740 AVPSTTVSPA GSSNSGNPPR AASTAGTEHQ EEHAARLVLE PTISVASTPW BACU014771/1-723 AVPSTTVSPA GSSNSSNPPR AASTAGTEHQ EEHAARLVLE PIISAASTPW ENSTTRP00000012251/1-729 PVPSTTVSPA SSSNSGNP-- RAASSGTEHQ EKHAAQLVLE PTISAASTPW 501 550 ENSP00000368135/1-740 ASKLLGPFPT SWDRSISSPQ PGQRTHATPQ APNPSLSEGE IPVLLLDDY- ENSBTAP00000000073/1-728 ASRHPGLSPA SRD-SVSLPQ PAWETRATLQ SPHPPPSEGG IPVLLQDDSR bmy_14744T0/1-740 ASKHPGLSPT SRS-PGSTPQ PARGTRATPR APHPPPSEGG IPVLLLDDS- BACU014771/1-723 ASKHPGLSPT SRN-PGSTPQ PARGTRATPR APHPPPSQGG IPVLLLDDS- ENSTTRP00000012251/1-729 ASKHPVLSPI SR--TQSTPQ PVRGTRATPR APHPPPSEGG IPVLLLDDS- 551 600 ENSP00000368135/1-740 -SEEEEGRKE EVGTPHQDVP CDYHPCKHLQ TPCAELQRRW RCRCPGLSGE ENSBTAP00000000073/1-728 EEEEEESGKE EVGAPAWDVP CDYHPCRHLQ TPCAELQRRW RCRCPGLSGE bmy_14744T0/1-740 SEEEEESGKE EVGAPARDEP CDYHPCRHLQ TPCAELQRRW RCRCPGLSGE BACU014771/1-723 SEEEEESGKE EVGAPARDEP CDYHPCRHLQ TPCAELQRRW RCRCPGLSGE ENSTTRP00000012251/1-729 SEEEEESGKE EVGAPARDEP CDYHPCRHLQ TPCAELQRRW RCRCPGLSGE 601 650 ENSP00000368135/1-740 DTIPDPPRLQ GVTETTDTSA LVHWCAPNSV VHGYQIRYSA EGWAGNQSVV ENSBTAP00000000073/1-728 DTLPEPPKLQ AVAETTDTTA LVRWCAPNSV VRAYQIRYAP EA-PGNQSVV bmy_14744T0/1-740 DTLPDPPKLQ AVAETTDTSA LVRWCAPNSV VRAYQIRYAP EGRPGNQSVK BACU014771/1-723 DTLPDPPKLQ AVAETTDTSA LVRWCAPNSV VRAYQIRYAP EGRPGNQSVV ENSTTRP00000012251/1-729 DTLPDPPKLQ AVAETTDTSA LVRWCAPNSV VRAYQIRYAP EGRPGNQSVV 651 700 ENSP00000368135/1-740 --GVIYATAR QHPLYGLSPG TTYRVCVLAA NRAGLSQPRS SGW------- ENSBTAP00000000073/1-728 --GDVCATAR QHALHGLLPA TAYRVCVLAA NGAGLSQ--- ---------- bmy_14744T0/1-740 RDGSRCRASL CVVLLGFFSS Q----CPSAS GRIN------ ---------- BACU014771/1-723 --WGVCATAR QHALHGLSPA TTYRVCVLAA NGAGLSRRGX XXXVLAASGA ENSTTRP00000012251/1-729 --GDVCATAR QHALHGLSPA TAYRVCVLAA NGAGLSR--- ---------- 701 750 ENSP00000368135/1-740 ----RSPCAA FTTKPSFALL LSGLCAASGL LLASTVVLSA CLCRRGQTLG ENSBTAP00000000073/1-728 ----RGACAA FTTGRSPVFI TAGLGSAGGL LLVSTALLAT GLCRRGRTPR bmy_14744T0/1-740 ----RIVCGS RKRENKWH-- -----NAAAF LILETTSSSH --FREVPHGQ BACU014771/1-723 GLSRRGACAA FSTGHSPALV AAGLGAAGGL LLVSTALLAA GLCRRGRTPR ENSTTRP00000012251/1-729 ----RGACAA FSTGRSPALL VAGLGAAGGL LLVSTALLAA GLCRRGRTPR 751 800 ENSP00000368135/1-740 LQRCDTHLVA YKNPAFDDYP LGLQTVS--- ---- ENSBTAP00000000073/1-728 TPPCHTQLLA YRNPA----- ---------- ---- bmy_14744T0/1-740 ALAKGPVIQG NDSSGFSSPS PPHSGVLT-- ---- BACU014771/1-723 SPNRRTQLLA YRNPAFAAEP APPAPASLPR ASDR ENSTTRP00000012251/1-729 SPNRRTQLLA YRNPAFAADP PPTR------ ----