KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:19 2014 Check: 00 .. Name: ENSTTRP00000015430/1-971 Len: 1364 Check: 352 Weight: 1.00 Name: ENSP00000367202/1-971 Len: 1364 Check: 669 Weight: 1.00 Name: BACU017534/1-1155 Len: 1364 Check: 8287 Weight: 1.00 Name: bmy_02862T0/1-773 Len: 1364 Check: 5091 Weight: 1.00 Name: ENSBTAP00000000084/1-971 Len: 1364 Check: 4768 Weight: 1.00 // 1 50 ENSTTRP00000015430/1-971 MATVRASPRG ALLLLLAVAG VAEVAGGLDP GSAGALCCNH SKDNQMCRDV ENSP00000367202/1-971 MATVRASLRG ALLLLLAVAG VAEVAGGLAP GSAGALCCNH SKDNQMCRDV BACU017534/1-1155 ---------- ---------- ---------- ---------- ---------- bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 MATVRASPRG ALLLLLTVAR VAEVAGGLAP GSAGALCCNH SKDNQMCRDV 51 100 ENSTTRP00000015430/1-971 CEQIFSSKSE SRLKHLLQRA PDYCPETMVE IWSCMNSSLP GVFKKSDGWV ENSP00000367202/1-971 CEQIFSSKSE SRLKHLLQRA PDYCPETMVE IWNCMNSSLP GVFKKSDGWV BACU017534/1-1155 ---------- ---------- ---------- ---------- ---------- bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 CEQIFSSKSE SRLKHLLQRA PDYCPETMVD IWSCMNSSLP GVFKKSDGWV 101 150 ENSTTRP00000015430/1-971 GLGCCELAIT LECRQACKQA SSKNDISRVC RKEYENALFS CISRNEMGSV ENSP00000367202/1-971 GLGCCELAIA LECRQACKQA SSKNDISKVC RKEYENALFS CISRNEMGSV BACU017534/1-1155 ---------- ---------- ---------- ---------- ------VGSV bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ------MGSV ENSBTAP00000000084/1-971 GLGCCELAIT LECRQACKQA SSKNDISRVC RKEYENALFS CISRNEMGSV 151 200 ENSTTRP00000015430/1-971 CCSYAGHHTN CREYCQAIFR TDSSPGPSQI KAVENYCASI SPQLIHCVNN ENSP00000367202/1-971 CCSYAGHHTN CREYCQAIFR TDSSPGPSQI KAVENYCASI SPQLIHCVNN BACU017534/1-1155 CCSYAGHHTN CREYCQAIFR TDSSPGPSQI KAVENYCASI SPQLIHCVNN bmy_02862T0/1-773 CCSYAGHHTN CREYCQAIFR TDSSPGPSQI KAVENYCASI SPQLIHCVNN ENSBTAP00000000084/1-971 CCSYAGHHTN CREYCQAIFR TDSSPGPSQI KAVENYCASI SPRLIHCVNN 201 250 ENSTTRP00000015430/1-971 YTQSYPMRNP TDSLYCCDRA EDHACQNACK RILMSKKTEM EIVDGLIEGC ENSP00000367202/1-971 YTQSYPMRNP TDSLYCCDRA EDHACQNACK RILMSKKTEM EIVDGLIEGC BACU017534/1-1155 YTQSYPMRNP TDSLYCCDRA EDHACQNACK RILMSKKTEM EIVDGLIEGC bmy_02862T0/1-773 YTQSYPMRNP TDSLYCCDRA EDHACQNACK RILMSKKTEM EIVDGLIEGC ENSBTAP00000000084/1-971 YTQSYPMRNP TDSLYCCDRA EDHACQSACK RILMSKKTEM EIVDGLIEGC 251 300 ENSTTRP00000015430/1-971 KTQPLPQDPL WQCFLESSQS VHPGVTVHPP PSTGLDGAKL HCCSKANTST ENSP00000367202/1-971 KTQPLPQDPL WQCFLESSQS VHPGVTVHPP PSTGLDGAKL HCCSKANTST BACU017534/1-1155 KTQPLPQDPL WQCFLESSQS VHPGVTVHPP PSTGLDGAKL HCCSKANTST bmy_02862T0/1-773 KTQPLPQDPL WQCFLESSQS VHPGVTVHPP PSTGLDGAKL HCCSKANTST ENSBTAP00000000084/1-971 KTQPLPQDPL WQCFLESSQS VHPGVTLHPP PSTGLDGAKL HCCSKANTST 301 350 ENSTTRP00000015430/1-971 CRELCTKLYS MSWGNTQSWQ EFDRFCEYNP VEVSMLTCLA DVREPCQLGC ENSP00000367202/1-971 CRELCTKLYS MSWGNTQSWQ EFDRFCEYNP VEVSMLTCLA DVREPCQLGC BACU017534/1-1155 CRELCTKLYS MSWGNTQSWQ EFDRFCEYNP VEVSMLTCLA DVREPCQLGC bmy_02862T0/1-773 CRELCTKLYS MSWGNTQSWQ EFDRFCEYNP VEVSMLTCLA DVREPCQLGC ENSBTAP00000000084/1-971 CRELCTKLYS MSWGNTQSWQ EFDRFCEYNP VEVSMLTCLA DVREPCQLGC 351 400 ENSTTRP00000015430/1-971 RNLTYCTNFN NRPTELFRSC NAQSDQGAMN DMKLWEKGSI KMPFINIPVL ENSP00000367202/1-971 RNLTYCTNFN NRPTELFRSC NAQSDQGAMN DMKLWEKGSI KMPFINIPVL BACU017534/1-1155 RNLTYCTNFN NRPTELFRSC NAQSDQGAMN DMKLWEKGSI KMPFINIPVL bmy_02862T0/1-773 RNLTYCTNFN NRPTELFRSC NAQSDQGAMN DMKLWEKGSI KMPFINIPVL ENSBTAP00000000084/1-971 RNLTYCTNFN NRPTELFRSC NAQSDQGAMN DMKLWEKGSI KMPFISIPVL 401 450 ENSTTRP00000015430/1-971 DIKKCQPEMW KAIACSLQIK PCHSKSRGSI ICKSDCVEIL KKCGDQNKFP ENSP00000367202/1-971 DIKKCQPEMW KAIACSLQIK PCHSKSRGSI ICKSDCVEIL KKCGDQNKFP BACU017534/1-1155 DIKKCQPEMW KAIACSLQIK PCHSKSRGSI ICKSDCVEIL KKCGDQNKFP bmy_02862T0/1-773 DIKKCQPEMW KAIACSLQIK PCHSKSRGSI ICKSDCVEIL KKCGDQNKFP ENSBTAP00000000084/1-971 DIKKCQPEMW KAIACSLQIK PCHSKSRGSI ICKSDCVEIL KKCGDQNKFP 451 500 ENSTTRP00000015430/1-971 EDHTAESICE LLSPTDDLEN CIPLDTYLRP STLGNIVEEV THPCNPNPCP ENSP00000367202/1-971 EDHTAESICE LLSPTDDLKN CIPLDTYLRP STLGNIVEEV THPCNPNPCP BACU017534/1-1155 EDHTAESICE LLSPTDDLEN CIPLDTYLRP STLGNIVEEV THPCNPNPCP bmy_02862T0/1-773 EDHTAESICE LLSPADDLEN CIPLDTYLRP STLGNIVEEV THPCNPNPCP ENSBTAP00000000084/1-971 EDHTAESICE LLSPTDDLEN CIPLDTYLRP SSLGNIVEEV THPCNPNPCP 501 550 ENSTTRP00000015430/1-971 ANELCEVNRK GCPSGDPCLP YSCVQGCKLG EASDFIVRQG TLIQVPSSAG ENSP00000367202/1-971 ANELCEVNRK GCPSGDPCLP YFCVQGCKLG EASDFIVRQG TLIQVPSSAG BACU017534/1-1155 ANELCEVNRK GCPSGDPCLP YSCVQG---- ---------- ---------- bmy_02862T0/1-773 ANELCEVNRK GCPSGDPCLP YSCVQGCKLG EASDFIVRQG TLIQVPSSAG ENSBTAP00000000084/1-971 ANELCEVNRK GCPSGDPCLP YSCVQGCKLG EASDFIVRQG TLIQVPSSAG 551 600 ENSTTRP00000015430/1-971 EVGCYKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367202/1-971 EVGCYKICSC GQSGLLENCM EMHCIDLQKS CIVGGKRKSH GTSFSIDCNV BACU017534/1-1155 ---------- ---------- ---------- ---------H GTSFNIDCNI bmy_02862T0/1-773 EVGCYKICSC GQSGLLENCI EMHCIDLQKS CIVGGKRKSH GTSFNIDCNI ENSBTAP00000000084/1-971 EVGCYKICSC GQSGLLENCI EMHCIDLQKS CIVGGKRKSH GTSFNVDCNI 601 650 ENSTTRP00000015430/1-971 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LPCNCADQFV PVCGQNGRTY ENSP00000367202/1-971 CSCFAGNLVC STRLCLSEHS SEDDRRTFTG LPCNCADQFV PVCGQNGRTY BACU017534/1-1155 CSCFAGNLVC STRLCLSEHS SEDDRRTFTG LPCNCADQFV PVCGQNGRTY bmy_02862T0/1-773 CSCFAGNLVC STRLCLSEHS SEDDRRTFTG LPCNCADQFV PVCGQNGRTY ENSBTAP00000000084/1-971 CSCFAGNLVC STRLCLSEHS SEDDRRTFTG LPCNCADQFV PVCGQNGRTY 651 700 ENSTTRP00000015430/1-971 PSACIARCVG LQDHQFEFGS CISKDPCTPN PCPKNQRCIP KPQVCLTTFD ENSP00000367202/1-971 PSACIARCVG LQDHQFEFGS CMSKDPCNPN PCQKNQRCIP KPQVCLTTFD BACU017534/1-1155 PSACIARCVG LQDHQFEFGS CISKDPCTPN PCPKNQRCIP KPQVCLTTFD bmy_02862T0/1-773 PSACIARCVG LQDHQFEFGS CISKDPCTPN PCPKNQRCIP KPQVCLTTFD ENSBTAP00000000084/1-971 PSACIARCVG LQDHQFEFGS CISKDPCTPN PCPKNQRCIP KPQVCLTTFD 701 750 ENSTTRP00000015430/1-971 KFGCSQYECL PRQLTCDQGR DPVCDTNHME HSNLCTL--- ---------- ENSP00000367202/1-971 KFGCSQYECV PRQLACDQVQ DPVCDTDHME HNNLCTL--- ---------- BACU017534/1-1155 KFGCSQYECL PRQLTCDQVR DPVCDTNHME HSNLCTLYQR GKSLLYKGPC bmy_02862T0/1-773 KFGCSQYECL PRQLTCDQVR DPVCDTNHME HSNLCTL--- ---------- ENSBTAP00000000084/1-971 KFGCSQYECL PRQLTCDQVR DPVCDTNHME HSNLCTL--- ---------- 751 800 ENSTTRP00000015430/1-971 ---------- ---------- ---------- ---------- ---------- ENSP00000367202/1-971 ---------- ---------- ---------- ---------- ---------- BACU017534/1-1155 QPFCRAPEPI CGHNGETYSS VCAAYSDRVA VDYYGPCQAV GVLSEHSSVT bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000015430/1-971 ---------- ---------- ---------- ---------- ---------- ENSP00000367202/1-971 ---------- ---------- ---------- ---------- ---------- BACU017534/1-1155 ECAAVKCPSL SATECKPIIP PDRRHLPGIT QCIPKPQVCL TTFDKFGCSQ bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000015430/1-971 ---------- ---------- ---------- -YQRGKSLLY KGPCQPFCRA ENSP00000367202/1-971 ---------- ---------- ---------- -YQRGKSLSY KGPCQPFCRA BACU017534/1-1155 YECLPRQLTC DQVRDPVCDT NHMEHSNLCT LYQRGKSLLY KGPCQPFCRA bmy_02862T0/1-773 ---------- ---------- ---------- -YQRGKSLLY KGPCQPFCRA ENSBTAP00000000084/1-971 ---------- ---------- ---------- -YQRGKSLLY KGPCQPFCRA 901 950 ENSTTRP00000015430/1-971 PEPICGHNGE TYSSVCAAYS DRVAVDYYGP CQAVGVLSEH SSVTECAAVK ENSP00000367202/1-971 TEPVCGHNGE TYSSVCAAYS DRVAVDYYGD CQAVGVLSEH SSVAECASVK BACU017534/1-1155 PEPICGHNGE TYSSVCAAYS DRVAVDYYGP CQAVGVLSEH SSVTECAAVK bmy_02862T0/1-773 PEPICGHNGE TYSSVCAAYS DRVAVDYYGP CQAVGVLSEY SSVTECAAVK ENSBTAP00000000084/1-971 PELVCGHNGE TYSSVCAAYS DRVAIDYYGP CQAVGVLSEY SSVAECAAVK 951 1000 ENSTTRP00000015430/1-971 CPSLSATECK PIIPPXACCP LCAGMLEVLF DKEKLDTIAK VANKKPITVL ENSP00000367202/1-971 CPSLLAAGCK PIIPPGACCP LCAGMLRVLF DKEKLDTIAK VTNKKPITVL BACU017534/1-1155 CPSLSATECK PIIPPGACCP LCAGMLRVLF DKEKLDTIAK VANKKPITVL bmy_02862T0/1-773 CPSLSATECK PIIPPGACCP LCAGMLRVLF DKEKLDTIAK ---------- ENSBTAP00000000084/1-971 CPSLSVTECK PIIPPGACCP LCAGMLRVLF DKEKLDTIAK VTNKKPITVL 1001 1050 ENSTTRP00000015430/1-971 EILQKIRMHV SVPQCDVFGY FSIESEIVIL IIPVDHYPKA LQIEACNKEA ENSP00000367202/1-971 EILQKIRMHV SVPQCDVFGY FSIESEIVIL IIPVDHYPKA LQIEACNKEA BACU017534/1-1155 EILEKIRMHV SVPQCDVFGY FSIESEIVIL IIPVDHHPKA LQIEACNKEA bmy_02862T0/1-773 ---------- ---------- ---------- ---------- --IEACNKEA ENSBTAP00000000084/1-971 EILQKVRMHV SVPQCDVFGY FSIESEIVIL IIPVDHYPKA LQIEACNKEA 1051 1100 ENSTTRP00000015430/1-971 EKIESLINSD SPTLAAHVPL SALIISQVQV SSS------- ---------- ENSP00000367202/1-971 EKIESLINSD SPTLASHVPL SALIISQVQV SSS------- ---------- BACU017534/1-1155 EKIESLINSD SPTLAAHVPL SALIISQVSC ASSLYCLHFW THPVSSQREE bmy_02862T0/1-773 EKIESLINSD SPTLAAHVPL SALIISQVQV SSS------- ---------- ENSBTAP00000000084/1-971 EKIESLINSD SPTLAAHVPL SALVISQVQV SSS------- ---------- 1101 1150 ENSTTRP00000015430/1-971 ---------- ---------- ---------- ---------- ---------- ENSP00000367202/1-971 ---------- ---------- ---------- ---------- ---------- BACU017534/1-1155 GDEENHNWPL GLCSEATLSF LPTSYQPKQV TPEFKRGPGF RIQLTFPISK bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000015430/1-971 -VLSAAASAQ PPCHSH---- ---------- --LFLLIL-- ---------- ENSP00000367202/1-971 -VPSAGVRAR PSCHSL---- ---------- --LLPLSL-- ---------- BACU017534/1-1155 ELPKSKYPPQ PPLHSYPVPD SVRLHTAANN GFPFLSDLSR PILTTVAVPV bmy_02862T0/1-773 -VLSAAARAQ PPCHSH---- ---------- --LFLLSL-- ---------- ENSBTAP00000000084/1-971 -MPSAAPSAR PPHHSC---- ---------- --LFLLSL-- ---------- 1201 1250 ENSTTRP00000015430/1-971 ---------- ---------- ---------- ---------- ---------- ENSP00000367202/1-971 ---------- ---------- ---------- ---------- ---------- BACU017534/1-1155 KSRHSLTPSI PLSAASKQFN DEVLKAHNEY RKQHGVAPLK LCKKLNREAQ bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000015430/1-971 ----GLALHR VWTHN----- ---------- ---------- ---------- ENSP00000367202/1-971 ----GLALHL LWTYN----- ---------- ---------- ---------- BACU017534/1-1155 QYSEALASTR ILKHSPESSR GQCGENLAWA SYDQTGKEVA DRWYSEIKNY bmy_02862T0/1-773 ----GLALHR VWTHN----- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ----GLTFHR VWRHN----- ---------- ---------- ---------- 1301 1350 ENSTTRP00000015430/1-971 ---------- ---------- ---------- ---------- ---------- ENSP00000367202/1-971 ---------- ---------- ---------- ---------- ---------- BACU017534/1-1155 NFQQPGFTSG TGHFTAMVWK NTKKMGVGKA SANDGSSFVV ARYFPAGNVV bmy_02862T0/1-773 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000084/1-971 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000015430/1-971 ---------- ---- ENSP00000367202/1-971 ---------- ---- BACU017534/1-1155 NQGFFEENVL PPKK bmy_02862T0/1-773 ---------- ---- ENSBTAP00000000084/1-971 ---------- ----