KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:21 2014 Check: 00 .. Name: BACU019606/1-758 Len: 760 Check: 7727 Weight: 1.00 Name: ENSTTRP00000009220/1-755 Len: 760 Check: 797 Weight: 1.00 Name: bmy_12861T0/1-464 Len: 760 Check: 8520 Weight: 1.00 Name: ENSP00000369862/1-752 Len: 760 Check: 6652 Weight: 1.00 Name: ENSBTAP00000000092/1-624 Len: 760 Check: 2287 Weight: 1.00 // 1 50 BACU019606/1-758 MQHSGVPIPP SPFSAPPPFL PGVTREGRRG LSSGGSAGQS AGVTGTATTA ENSTTRP00000009220/1-755 MQHSGVSIPP SPFSAPPTFL PGVTREGRRG LSSGGSAGQS AGVTATATTA bmy_12861T0/1-464 ---------- ---------- ---------- ---------- ---------- ENSP00000369862/1-752 MQHSCIPTPP SPFSAPPAFL PVVTRESRRG LSSGGSAGRN AGVTA---TA ENSBTAP00000000092/1-624 ---------- ---------- ---------- ---------- ---------- 51 100 BACU019606/1-758 AAADGWKGRL PSPLVLLPRS ARCQARRRRR RGGRTSSLLQ LPPAPERALL ENSTTRP00000009220/1-755 AAADGWKGRL PSPLVLLPRS ARCQA--RRR RGGRTSSLLQ LPPAPERALL bmy_12861T0/1-464 ---------- ---------- ---------- ---------- ---------- ENSP00000369862/1-752 AAADGWKGRL PSPLVLLPRS ARCQA--RRR RGGRTSSLLL LPPTPERALF ENSBTAP00000000092/1-624 ---------- ---------- ---------- ---------- ---------- 101 150 BACU019606/1-758 PSPSSDPSPR GLGASAGAAQ GAGAGLLLGC RASMSDNQSW NSSGSEEDPE ENSTTRP00000009220/1-755 PSPSSDASPR GLGASAGAAQ GAGAGLLLGC RASMSDNQSW NSSGSEEDPE bmy_12861T0/1-464 ---------- ---------- ---------- ---MSDNQSW NSSGSEEDPE ENSP00000369862/1-752 ASPSPDPSPR GLGASSGAAE GAGAGLLLGC RASMSDNQSW NSSGSEEDPE ENSBTAP00000000092/1-624 ---------- ---------- ---------- ---MSDNQSW NSSGSEEDPE 151 200 BACU019606/1-758 TESGPPVERC GVLSKWTNYI HGWQDRWVVL KNNTLSYYKS EDETEYGCRG ENSTTRP00000009220/1-755 TESGPPVERC GVLSKWTNYI HGWQDRWVVL KNNTLSYYKS EDETEYGCRG bmy_12861T0/1-464 TESGPPVERC GVLSK----- ---------- ---------- ---------- ENSP00000369862/1-752 TESGPPVERC GVLSKWTNYI HGWQDRWVVL KNNALSYYKS EDETEYGCRG ENSBTAP00000000092/1-624 TESGPPVERC GVLSKWTNYI HGWQDRWVVL KNNTLSYYKS EDETEYGCRG 201 250 BACU019606/1-758 SICLSKAVIT VSSCSPSFNK YLLSISYTPG TYSRGLGYVY EQSRLRSLLL ENSTTRP00000009220/1-755 SICLSKAVIT XXXXXXXXXX XXXXXXXXX- XXXXXXXXXX XXXXXXXXXX bmy_12861T0/1-464 ---------- PHDFDEC--R FDISVNDSV- WYLRAQDPDH RQQWIDAIEQ ENSP00000369862/1-752 SICLSKAVIT PHDFDEC--R FDISVNDSV- WYLRAQDPDH RQQWIDAIEQ ENSBTAP00000000092/1-624 SICLSKAVIT PHDFDEC--R FDISVNDSV- WYLRAQDPDH RQQWIDAIEQ 251 300 BACU019606/1-758 --TESGYGSE SSLRRHGSMV SLVSGASGYS ATSTSSFKKG HSLREKLAEM ENSTTRP00000009220/1-755 --TESGYGSE SSLRRHGSMV SLVSGASGYS ATSTSSFKKG HSLREKLAEM bmy_12861T0/1-464 H--------- ---------- ---------- -------KKG HSLREKLAEM ENSP00000369862/1-752 HKTESGYGSE SSLRRHGSMV SLVSGASGYS ATSTSSFKKG HSLREKLAEM ENSBTAP00000000092/1-624 HKTESGYGSE SSLRRHGSMV SLVSGASGYS ATSTSSFKKG HSLREKLAEM 301 350 BACU019606/1-758 ETFRDILCRQ VDTLQKYFDA CADAVSKDEL QRDKVVEDDE DDFPTTRSDG ENSTTRP00000009220/1-755 ETFRDILCRQ VDTLQKYFDA CADAVSKDEL QRDKVVEDDE DDFPTTRSDG bmy_12861T0/1-464 ETFRDILCRQ VDTLQKYFDA CADAVSKDEL QRDKVVEDDE DDFPTTRSDG ENSP00000369862/1-752 ETFRDILCRQ VDTLQKYFDA CADAVSKDEL QRDKVVEDDE DDFPTTRSDG ENSBTAP00000000092/1-624 ETFRDILCRQ VDTLQKFFDA CADAVSKDEF QRDKVVEDDE DDFPTTRSDG 351 400 BACU019606/1-758 DFLHNTNGNK EKVFPHVTPK GINGIDFKGE AITFKATTAG ILATLSHCIE ENSTTRP00000009220/1-755 DFLHNTNGNK EKVFPHVTPK GINGIDFKGE AITFKATTAG ILATLSHCIE bmy_12861T0/1-464 DFLHNTNGNK EKVFPHVTPK GINGIDFKGE AITFKATTAG ILATLSHCIE ENSP00000369862/1-752 DFLHSTNGNK EKLFPHVTPK GINGIDFKGE AITFKATTAG ILATLSHCIE ENSBTAP00000000092/1-624 DFLHNTNGNK EKVFPHVTPK GINGIDFKGE AITFKATTAG ILATLSHCIE 401 450 BACU019606/1-758 LMVKREDSWQ KRLDKESEKR RRIEEAYKNA MTELKKKSHF GGPDYEEGPN ENSTTRP00000009220/1-755 LMVKREDSWQ KRLDKESEKR RRIEEAYKNA MTELKKKSHF GGPDYEEGPN bmy_12861T0/1-464 LMVKREDSWQ KRLDKESEKR RRIEEAYKNA MTELKKKSHF GGPDYEEGPN ENSP00000369862/1-752 LMVKREDSWQ KRLDKETEKK RRTEEAYKNA MTELKKKSHF GGPDYEEGPN ENSBTAP00000000092/1-624 LMVKREDSWQ KRMDKETEKR RRVEEAYKNA MTELKKKSHF GGPDYEEGPN 451 500 BACU019606/1-758 SLINEEEFFD AVEAALDRQD KIEEQSQSEK VRLHWPTSMP SGDAFSSVGT ENSTTRP00000009220/1-755 SLINEEEFFD AVEAALDRQD KIEEQSQSEK VRLHWPTSMP SGDAFSSVGT bmy_12861T0/1-464 SLINEEEFFD AVEAALDRQD KIEEQSQSEK VRLHWPTSMP SGDAFSSVGT ENSP00000369862/1-752 SLINEEEFFD AVEAALDRQD KIEEQSQSEK VRLHWPTSLP SGDAFSSVGT ENSBTAP00000000092/1-624 SLINEEEFFD AVEAALDRQD KIEEQSQSEK VRLHWSTSMP SGDAFSSVGT 501 550 BACU019606/1-758 HRFVQKPYSR SSSMSSIDLV SASDDVHRFS SQVEEMVQNH MTYSLQDVGG ENSTTRP00000009220/1-755 HRFVQKPYSR SSSMSSIDLV SASDDVHRFS SQVEEMVQNH MTYSLQDVGG bmy_12861T0/1-464 HRFVQKPYSR SSSMSSIDLV SASDDVHRFS SQVEEMVQNH MTYSLQDVGG ENSP00000369862/1-752 HRFVQKPYSR SSSMSSIDLV SASDDVHRFS SQVEEMVQNH MTYSLQDVGG ENSBTAP00000000092/1-624 HRFVQKPYSR SSSMSSIDLV SASDGVHRFS SQVEEMVQNH MTYSLQDVGG 551 600 BACU019606/1-758 DANWQLVVEE GEMKVYRREV EENGIVLDPL KATHAVKGVT GHEVCNYFWN ENSTTRP00000009220/1-755 DANWQLVVEE GEMKVYRREV EENGIVLDPL KATHAVKGVT GHEVCNYFWN bmy_12861T0/1-464 DANWQLVVEE GEMKKWKQ-- ---------- ---------- GYD------- ENSP00000369862/1-752 DANWQLVVEE GEMKVYRREV EENGIVLDPL KATHAVKGVT GHEVCNYFWN ENSBTAP00000000092/1-624 DANWQLVVEE GEMKVYRREV EENGIVLDPL KATHAVKGVT GHEVCNYFWN 601 650 BACU019606/1-758 VDVRNDWETT IENFHVVETL ADNAIIIYQT HKRVWPASQR DVLYLSAIRK ENSTTRP00000009220/1-755 VDVRNDWETT IENFHVVETL ADNAIIIYQT HKRVWPASQR DVLYLSAIRK bmy_12861T0/1-464 -------KAT IENFHVVETL ADNAIIIYQT HK-------- ---------- ENSP00000369862/1-752 VDVRNDWETT IENFHVVETL ADNAIIIYQT HKRVWPASQR DVLYLSVIRK ENSBTAP00000000092/1-624 VDVRNDWETT IENFHVVETL ADNAIIIYQT HKRVWPASQR DVLYLSAIRK 651 700 BACU019606/1-758 IPALTENDPE TWIVCNFSVD HNSAPLNNRC VRAKINIAMI CQTLVSPPEG ENSTTRP00000009220/1-755 IPALTENDPE TWIVCNFSVD HNSAPLNNRC VRAKINIAMI CQTLVSPPEG bmy_12861T0/1-464 ---------- ---------- -----LNNRC VRAKINIAMI CQTLVSPPEG ENSP00000369862/1-752 IPALTENDPE TWIVCNFSVD HDSAPLNNRC VRAKINVAMI CQTLVSPPEG ENSBTAP00000000092/1-624 IPALNENDPE TWIVCNFSVD HSSAPLNNRC VRAKINVAMI CQTLVSPPEG 701 750 BACU019606/1-758 NQEISRDNIL CKITYVANVN PGGWAPASVL RAVAKREYPK FLKRFTSYVQ ENSTTRP00000009220/1-755 NQEISRDNIL CKITYVANVN PGGWAPASVL RAVAKREYPK FLKRFTSYVQ bmy_12861T0/1-464 NQEISRDNIL CKITYVANVN PGGWAPASVL RAVAKREYPK FLKRFTSYVQ ENSP00000369862/1-752 NQEISRDNIL CKITYVANVN PGGWAPASVL RAVAKREYPK FLKRFTSYVQ ENSBTAP00000000092/1-624 NQEISRDNIL CKITYVANVN PGGWAPASVL RAVAKREYPK FLKRFTSYVQ 751 800 BACU019606/1-758 EKTAGKPILF ENSTTRP00000009220/1-755 EKTAGKPILF bmy_12861T0/1-464 EKTAGKPILF ENSP00000369862/1-752 EKTAGKPILF ENSBTAP00000000092/1-624 EKTAGKPILF