KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:23 2014 Check: 00 .. Name: ENSTTRP00000003927/1-1165 Len: 1229 Check: 6379 Weight: 1.00 Name: ENSP00000359370/1-1179 Len: 1229 Check: 8744 Weight: 1.00 Name: ENSBTAP00000000099/1-1177 Len: 1229 Check: 2756 Weight: 1.00 Name: bmy_21978T0/1-1057 Len: 1229 Check: 8371 Weight: 1.00 Name: BACU012398/1-1162 Len: 1229 Check: 2126 Weight: 1.00 // 1 50 ENSTTRP00000003927/1-1165 MKLKELERPA VPVWSPASHY -------TSA QQLDASFGTD GTLEIFEVDF ENSP00000359370/1-1179 MKLKELERPA VQAWSPASQY PLYLATGTSA QQLDSSFSTN GTLEIFEVDF ENSBTAP00000000099/1-1177 MKLKELERQA VQVWSPASQY PVYLATGTSA QQLDASFSTN GTLEIFEVDF bmy_21978T0/1-1057 MKLKELERPA VQVWSPASQY PVYLATGTSA QQLDASFSTD GTLEIFEVDF BACU012398/1-1162 MKLKELERPA VQVWSPASQY PVYLATGTSA QQLDASFSTD GTLEIFEVDF 51 100 ENSTTRP00000003927/1-1165 RDPSLDLKCK GVLSPSSRLH KLIWS-FGNG LLEGSGVIAG GRDDGMLTLY ENSP00000359370/1-1179 RDPSLDLKHR GVLSALSRFH KLVWGSFGSG LLESSGVIVG GGDNGMLILY ENSBTAP00000000099/1-1177 RDPSLDLKRK GVLSASSRFH KLIWGSFGSG LLEASGVIAG GGDNGMLTLY bmy_21978T0/1-1057 RDPSLDLKRK GVLSASSRFH KLIWGSFGNG VLEGSGVIAG GGDDGMLTLY BACU012398/1-1162 RDPSLDLKRK GVLSASSRFH KLIWGSFGNG VLEGSGVIAG GGDDGMLTLY 101 150 ENSTTRP00000003927/1-1165 NVTHILSLGK EPVITQIQKH TGAVRALDFN PFQGNLLASG ANDSEIFIWD ENSP00000359370/1-1179 NVTHILSSGK EPVIAQKQKH TGAVRALDLN PFQGNLLASG ASDSEIFIWD ENSBTAP00000000099/1-1177 NVTHVLSSGK EPVIAQRQKH SGAVRALDFN PFQGNLLASG ANDSEIFIWD bmy_21978T0/1-1057 NVTHILSSGK EPVITQIQKH TGAVRALDFN PFQGNLLASG ANDSELFIWD BACU012398/1-1162 NVTHILSSGK EPVITQIQKH TGAVRALDFN PFQGNLLASG ANDSEIFIWD 151 200 ENSTTRP00000003927/1-1165 LNNLSVPMTP GSKS------ ---------- ---------- ---------- ENSP00000359370/1-1179 LNNLNVPMTL GSKS------ ---------- ---------- ---------- ENSBTAP00000000099/1-1177 LNNLSVPMTP GSKS------ ---------- ---------- ---------- bmy_21978T0/1-1057 LNNLSVPMTP GSKSQSVTGP IFFFLAFVSY AYSIVRSDRL SSTCPPHILP BACU012398/1-1162 LNNLSVPMTP GSKS------ ---------- ---------- ---------- 201 250 ENSTTRP00000003927/1-1165 QQPPEDIKAL SWNRQVQHIL PSAHPSSKAV VWDLRKNEPI IKVSNHSNRM ENSP00000359370/1-1179 QQPPEDIKAL SWNRQAQHIL SSAHPSGKAV VWDLRKNEPI IKVSDHSNRM ENSBTAP00000000099/1-1177 QQPLEDIKAL SWNRQVQHIL SSAHPSGKAV VWDLRKNEPI IKVSDHSNRM bmy_21978T0/1-1057 QQPPEDIKAL SWNCQVQHIL SSAHPSGKAV VWDLRKNEPI IKVSDHSNRM BACU012398/1-1162 QQPPEDIKAL SWNRQVQHIL SSAHPSGKAV VWDLRKNEPI IKVSDHSNRM 251 300 ENSTTRP00000003927/1-1165 HCSGLAWHPD MATQLVLCSE DDRLPVIHLW DLCFASSPLK VLESHSRGIL ENSP00000359370/1-1179 HCSGLAWHPD IATQLVLCSE DDRLPVIQLW DLRFASSPLK VLESHSRGIL ENSBTAP00000000099/1-1177 HCSGLAWHPD IATQLVLCSE DDRLPVIQLW DLRFASSPLK VLESHSRGIL bmy_21978T0/1-1057 HCSGLAWHPD IATQLVLCSE DDRLPVIHLW DLRFASSPLK VLESHSRGIL BACU012398/1-1162 HCSGLAWHPD IATQLVLCSE DDRLPVIHLW DLRFASSPLK VLESHSRGIL 301 350 ENSTTRP00000003927/1-1165 SVSWSQADAE LLLSSAKDNQ VLCWNLESSE VVYKLPTRSS WCFDAQWCPW ENSP00000359370/1-1179 SVSWSQADAE LLLTSAKDSQ ILCRNLGSSE VVYKLPTQSS WCFDVQWCPR ENSBTAP00000000099/1-1177 SVSWSQADAE LLLSSAKDSQ ILCWNLGSSE VVYKLPMLSS WCFDVQWCPR bmy_21978T0/1-1057 SVSWSQADDE LLLSSAKDNQ ILCWNLGSSE VVYKLPTLSS WCFDVQWCPR BACU012398/1-1162 SVSWSQADAE LLLSSAKDNQ ILCWNLGSSE VVYKLPTLSS WCFDVQWCPR 351 400 ENSTTRP00000003927/1-1165 DPPVFSAASF DGWISLYSVM GRSWEVQQMR QADKISSSFS KV-HLPPLQV ENSP00000359370/1-1179 DPSVFSAASF NGWISLYSVM GRSWEVQHMR QADKISSSFS KGQPLPPLQV ENSBTAP00000000099/1-1177 DPLVFSAASF DGWINLYSVM GRSWEVQQMR QADKISSSFS KGQPLPPLQV bmy_21978T0/1-1057 DPPVFSAASF DGWISLYSVM GRSWEVQQMR QADKV--LWS SGQLLHTVCS BACU012398/1-1162 DPPVFSAASF DGWISLYSVM GRSWEVQQMR QADKISSSFS KVQHLPPLQV 401 450 ENSTTRP00000003927/1-1165 PEQVAQA--S LISPLKKNPK WMRRQAGVSF A--------- ---FGGKLVT ENSP00000359370/1-1179 PEQVAQA--P LIPPLKKPPK WIRRPTGVSF A--------- ---FGGKLVT ENSBTAP00000000099/1-1177 PEQVAQA--S LIPPLKKPPK WMRRPAGVSF A--------- ---FGGKLVT bmy_21978T0/1-1057 GSHLVAGGMG LVEQLHGTLE VFEGVVXCGH KLLAGGAHLW GCQFGGKLVT BACU012398/1-1162 PEQVAQA--S LIPPLKKPPK WMRKPAGVSF A--------- ---FGGKLVT 451 500 ENSTTRP00000003927/1-1165 FGLPSNPAHQ VPQPCLRLVF ISQVTTEPEF LMWSAELQKG LGSGNLLNYC ENSP00000359370/1-1179 FGLPSTPAHL VPQPCPRLVF ISQVTTESEF LMRSAELQEA LGSGNLLNYC ENSBTAP00000000099/1-1177 FGLPSTPVHQ VPQPCLRLVF ISQVTTEPEL LAQSAELQEA LGSGNLLNYC bmy_21978T0/1-1057 FGLPSTPAHQ VPQPCLXLVF ISQVTTEXEF LMRSAELQEG LGSGNLLNYC BACU012398/1-1162 FGLPSTPAHQ VPQPCLRLVF ISQVTTEPEF LMRSAELQEG LGSGNLLNYC 501 550 ENSTTRP00000003927/1-1165 QNKIQQASLQ SEKMLWQFLK VTLEKDSRMK FLRLLGYNKD ELQKKVAT-L ENSP00000359370/1-1179 QNKSQQALLQ SEKMLWQFLK VTLEQDSRMK FLKLLGYSKD ELQKKVATWL ENSBTAP00000000099/1-1177 QNKIHQASLQ SEKMLWQFLK VTLEKDARMK FLKLLGYSKD ELQKKVATWL bmy_21978T0/1-1057 QNKIQQASXQ SEKMLWQFLK VTLEKDSRMK FLKLLGYNKD ELQKKVATWL BACU012398/1-1162 QNKIQQASPQ SEKMLWQFLK VTLEKDSRMK FLKLLGYNKD ELQKKVATWL 551 600 ENSTTRP00000003927/1-1165 KSDLGLGESP QPKGVDLNSN RQQAFCIQXX XXXXXXXXXX XXXXXXXXXX ENSP00000359370/1-1179 KSDVGLGESP QPKGNDLNSD RQQAFCSQAS KHTTKEASAS SAFFDELVPQ ENSBTAP00000000099/1-1177 RSDLRLGEIP QSKGDDLNSN RQQAFSIQTS KHTTWEASVS SDFFDELIPQ bmy_21978T0/1-1057 KSDLGLGESP QPKGVDLNSN RQQAFCIQTS KHTTKEASAC STFFDELVPQ BACU012398/1-1162 KSDLGLGESP QPKGVDLNSN RQQAFCIQTS KHTTKEASAC STFFDELVPQ 601 650 ENSTTRP00000003927/1-1165 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359370/1-1179 NMTPWEIPIT KDIDGLLSQA LLLGELGPAV ELCLKEERFA DAIILAQAGG ENSBTAP00000000099/1-1177 NMTLWEIPIT EDTEGLLSRA LLLGELGPAV ELCLKEERFA DAIILAQAGG bmy_21978T0/1-1057 DMTPWEIPIT EDTGGLLSQA LLLGELGPAV ELCLKEECFA DAIILAQAGG BACU012398/1-1162 DMTPWEIPIT EDTDGLLSQA LLLGELGPAV ELCLKEECFA DAIILAQAGG 651 700 ENSTTRP00000003927/1-1165 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359370/1-1179 TDLLKQTQER YLAKKKTKIS SLLACVVQKN WKDVVCTCSL KNWREALALL ENSBTAP00000000099/1-1177 SDLLKQAQER YLAKKKTGIA PLLACIIQKN WKDMVHACSL KNWREALALL bmy_21978T0/1-1057 ADLLKQTQEH YLAKKKTRIA PLLACVIQKN WKDMVCACSL KNWREALALL BACU012398/1-1162 ADLLKQTQEH YLAKKKTRIA PLLACVIQKN WKDMVCACSL KNWREALALL 701 750 ENSTTRP00000003927/1-1165 XXXXXXXXXX XXXXMLGTHM EQEGGRALTS EARLCYVCSG SVERLVECWA ENSP00000359370/1-1179 LTYSGTEKFP ELCDMLGTRM EQEGSRALTS EARLCYVCSG SVERLVECWA ENSBTAP00000000099/1-1177 LTYSEPEKFP ELCDRLGTRM EQESGWALTS EARLCYVCSG SVERLVECWA bmy_21978T0/1-1057 LTYSGPEKFP ELCDMLGTRM EQEGGRALTS EARLCYVCSG SVERLVECWE BACU012398/1-1162 LTYSGPEKFP ELCDMLGTRM EQEGGRALTS EARLCYVCSG SVERLVECWE 751 800 ENSTTRP00000003927/1-1165 KCPWASSPMA LQDLMEKVMV PNRSLKLLRG ADGVSPGPAT TYRIAQYANL ENSP00000359370/1-1179 KCHQALSPMA LQDLMEKVMV LNRSLEQLRG PHGVSPGPAT TYRVTQYANL ENSBTAP00000000099/1-1177 KCQPASSPMA LQDLMEKVMV LNRSLELLRG PDGVSPGPAT TYRITQYANL bmy_21978T0/1-1057 KCPRASSPMA LQDLMEKVMV LNKSLKLLRG PDG------- ---------- BACU012398/1-1162 KCPRASSPMA LQDLMEKVMV LNKSLKLLRG PDGVSPGPAT TYRIAQYANL 801 850 ENSTTRP00000003927/1-1165 LAAQGSLVAA MSYLPSDSAQ PPIQQLRDWL FHAQGSGVLG QQSPPFPFPR ENSP00000359370/1-1179 LAAQGSLATA MSFLPRDCAQ PPVQQLRDRL FHAQGSAVLG QQSPPFPFPR ENSBTAP00000000099/1-1177 LAAQGSLATA MSYLPSDCAQ LPVQQLRDRL FHAQGSGVLG QQSPPFPFPR bmy_21978T0/1-1057 ---------- ---------- ---------- ---------- ---------- BACU012398/1-1162 LAAQGSLVTA MSYLPSDCTQ PPIQQLRDRL FHAQGSGVLG QQSPPFPFPR 851 900 ENSTTRP00000003927/1-1165 VIVGAAPHSQ ETSSPRLGFQ SSHQVPSPSP RPRIFTPLSS LVMPLTPSRP ENSP00000359370/1-1179 IVVGATLHSK ETSSYRLGSQ PSHQVPTPSP RPRVFTPQSS PAMPLAPSHP ENSBTAP00000000099/1-1177 VVVGATPYSQ ETSSPRLKFQ SSHQVPILPP RPRIFTPQSS LMMPLTPSHP bmy_21978T0/1-1057 ---------- ---------- ----VPAPSP RTRIFTPPSS LVMPLTPSRP BACU012398/1-1162 VIVGAAPHSQ ETSSPRLGFQ SSHQVPAPSP RPRIFTPPSS LVMPLTPSRP 901 950 ENSTTRP00000003927/1-1165 SPYQGSRMQN TSDYRPSGFQ EAQSLPVVPG VRPALCQPRL SRGQRVQAPN ENSP00000359370/1-1179 SPYQGPRTQN ISDYRAPGPQ AIQPLPLSPG VRPASSQPQL LGGQRVQVPN ENSBTAP00000000099/1-1177 SPYQGSRMQN TSDYRPSGVQ EAQPLPLGPG VRPALSQPQL LGGQRAQAPN bmy_21978T0/1-1057 SPYQGSRMQN TSDYRPSGFQ EAQSLPVVPG VRPALSQPQL SGGQRMQAPN BACU012398/1-1162 SPYQGSRMQN TSDYRPSGFQ EAQSLPVVPG VRPALSQPQL SGGQRVQAPN 951 1000 ENSTTRP00000003927/1-1165 PVGFPGTWPL PGP--PTAPP DIMQAGSASL PETPRRLPLL PVRAPGFNPM ENSP00000359370/1-1179 PVGFPGTWPL PGSPLPMACP GIMRPGSTSL PETPRLFPLL PLRPLGPGRM ENSBTAP00000000099/1-1177 PVGFPGTWPL LAP--PMAPP NIMQPGSVPL PRAPPVHPLF PVRAPGFSPM bmy_21978T0/1-1057 PMGFPGTWPL PGP--PTAPP DIMQAGSASL PETPRRLPLL PVRAPGFNPM BACU012398/1-1162 PVGFPGTWPL PGP--PTAPP DIMQSGSASL PETPRRLPLL PVRAPGFNPM 1001 1050 ENSTTRP00000003927/1-1165 SSQPPAPPVT FSAAHPPGGP GAPCANTFPT TGILTPQPGP QDSLENAPVP ENSP00000359370/1-1179 VSHTPAPPAS FPVPYLPGDP GAPCSSVLPT TGILTPHPGP QDSWKEAPAP ENSBTAP00000000099/1-1177 SSQPPAPPVS FPAAHPPGGP GTPCAGVLPT TGILIPHPGP QDSLKNAPVP bmy_21978T0/1-1057 SSQPPAPPVT FSAAHPPGGP GAPCADAFPT TGILTPQPVA RD-------- BACU012398/1-1162 SSQPPAPPVT FSAAHPPGGP GAPCADAFPT TGILTPQPGP QDSLENAPVP 1051 1100 ENSTTRP00000003927/1-1165 RGNLQRKELP ETFMPPAPIT APVMCLTPKP RGVLSSQPAV PSVSHAPPGA ENSP00000359370/1-1179 RGNLQRNKLP ETFMPPAPIT APVMSLTPEL QGILPSQPPV SSVSHAPPGV ENSBTAP00000000099/1-1177 KGNLQRKKLP ETFMPPAPIT APVMCLTPEP RGVLSSQPAV PSVSHAPPGA bmy_21978T0/1-1057 ---------- --------IY AP-------- ----STNYCS SYQLQRPP-- BACU012398/1-1162 RGNLQRKELP ETFMPPAPIT APVMCLTPEP RGVLSSQPAV PSQLQRPP-- 1101 1150 ENSTTRP00000003927/1-1165 PGELS--LLQ RPPAKMDRKE LPPEHQSLNI SFEALLQRCS LSATDIKTKR ENSP00000359370/1-1179 PGELSLQLQH LPPEKMERKE LPPEHQSLKS SFEALLQRCS LSATDLKTKR ENSBTAP00000000099/1-1177 PRELSRQMTG MPLDKINRKE LPPEHQSLKI SFEALLQRCS LSATDLKTKR bmy_21978T0/1-1057 ---------- ---EKMDRKE LPPEHQSLKI SLEALLQRCS LCATDV---- BACU012398/1-1162 ---------- ---EKMDRKE LPPEHQSLKI SLEALLQRCS LSATDVKTKR 1151 1200 ENSTTRP00000003927/1-1165 KLDEAAQRLE CLYEKLCEET LSPPVLPGLH EVAQCVDAGR FERGLAVHAQ ENSP00000359370/1-1179 KLEEAAQRLE YLYEKLCEGT LSPHVVAGLH EVARCVDAGS FEQGLAVHAQ ENSBTAP00000000099/1-1177 KLDEAAQRLE CLYDKLCEGT LSPPVLAGLH EIARCVDAGS PEQGLAMHAQ bmy_21978T0/1-1057 ---------- ---------- LSPPVLAGLH EVARCVDAGS FERGLAVHAQ BACU012398/1-1162 KLDEAAQRLE CLYEKLCEGT LSPPVLAGLH EVARCVDAGS FERGLAVHAQ 1201 1250 ENSTTRP00000003927/1-1165 VVSCSSFSEV SSFMPVLKSV LTIAYKLHI ENSP00000359370/1-1179 VAGCSSFSEV SSFMPILKAV LIIAHKLLV ENSBTAP00000000099/1-1177 VVGCSSFSEV SSFMPVLKSV LTIAHKLRV bmy_21978T0/1-1057 VVSCSSFSEV SSFMPVLKSV LTIAHKLHI BACU012398/1-1162 VVSCSSFSEV SSFMPVLKSI LTIAHKLHI