KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:25 2014 Check: 00 .. Name: ENSTTRP00000006593/1-1282 Len: 1325 Check: 8851 Weight: 1.00 Name: ENSP00000271640/1-1291 Len: 1325 Check: 9814 Weight: 1.00 Name: ENSBTAP00000000107/1-1294 Len: 1325 Check: 5495 Weight: 1.00 Name: bmy_11136T0/1-1164 Len: 1325 Check: 9420 Weight: 1.00 Name: BACU007237/1-1293 Len: 1325 Check: 2942 Weight: 1.00 // 1 50 ENSTTRP00000006593/1-1282 MSSLPGCIGL DAATAAVESE EIAELQQAVV EELGISMEEL RQFIDEELEK ENSP00000271640/1-1291 MSSLPGCIGL DAATATVESE EIAELQQAVV EELGISMEEL RHFIDEELEK ENSBTAP00000000107/1-1294 MSSLPGCLGL AAATAAVESE EIAELQQSVV EELGISMEEL RQFIDEELEK bmy_11136T0/1-1164 ---------- ---------- ---------- ---------- ---------- BACU007237/1-1293 MSSLPGCIGL DAATAAVESE EIAELQQAVV EELGISMEEL RQFIDDELEK 51 100 ENSTTRP00000006593/1-1282 MDCIQQRK-- LAELETWILR ---SVAHVDQ LXXXXX---- -XAVTNCESL ENSP00000271640/1-1291 MDCVQQRKKQ LAELETWVIQ KESEVAHVDQ LFDDAS---- -RAVTNCESL ENSBTAP00000000107/1-1294 MDCVQQRKKQ LAELETWVIQ KESEVAHVDQ LFDDASRCSN IRAVTNCESL bmy_11136T0/1-1164 ---------- ---------- ---------- ---------- ---------- BACU007237/1-1293 MDCIQQRKKQ LAELETWVIQ KESEVAHVDQ LFDDAS---- -RAVTNCESL 101 150 ENSTTRP00000006593/1-1282 VKDFYSKLGL QYRDSSSEDE ASRPTEIIEI PDEDDDVLSI DSGDAGSRTP ENSP00000271640/1-1291 VKDFYSKLGL QYRDSSSEDE SSRPTEIIEI PDEDDDVLSI DSGDAGSRTP ENSBTAP00000000107/1-1294 VKDFYSKLGL QYRDSSSEDE ASRPTEIIEI PDEDDDVLSI DSGDAGNRTP bmy_11136T0/1-1164 ---------- ---------- ---------- ---------- ---------- BACU007237/1-1293 VKDFYSKLGL QYRDSSSEDE ASRPTEIIEI PDEDDDVLSI DSGDAGSRTP 151 200 ENSTTRP00000006593/1-1282 KDQKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- --------XX ENSP00000271640/1-1291 KDQKLREAMA ALRKSAQDVQ KFMDAVNKKS SSQDLHK--- --------GT ENSBTAP00000000107/1-1294 KDQKLREAMA ALRKSAQDVQ KFMDAVNKKS NSQDLHK--- --------GT bmy_11136T0/1-1164 --------MA ALRKSAQDVQ KFMDAVNKKS SSQDLHKVYA ISLYAFFLGT BACU007237/1-1293 KDQKLREAMA ALRKSAQDVQ KFMDAVNKKS SSQDLHK--- --------GT 201 250 ENSTTRP00000006593/1-1282 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000271640/1-1291 LSQMSGELSK DGDLIVSMRI LGKKRTKTWH KGTLIAIQTV GPGKKYKVKF ENSBTAP00000000107/1-1294 LSQMPGELSK DGDLVVNMRI LGKKRTKTWH KGTLIAIQTV GSGKKYKVKF bmy_11136T0/1-1164 LSQMSGELSK DGDLVVSMRI LGKKRTKTWH KGTLIAIQTV GPGKKYKVKF BACU007237/1-1293 LSQMSGELSK DGDLVVSMRI LGKKRTKTWH KGTLIAIQTV GPGKKYKVKF 251 300 ENSTTRP00000006593/1-1282 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000271640/1-1291 DNKGKSLLSG NHIAYDYHPP ADKLYVGSRV VAKYKDGNQV WLYAGIVAET ENSBTAP00000000107/1-1294 DNKGKSLLSG NHIAYDYHPP ADKLYVGSRV VAKYKDGNQV WLYAGIVAET bmy_11136T0/1-1164 DNKGKSLLSG NHIAYDYHPP ADKLYVGSRV VAKYKDGNQV WLYAGIVAET BACU007237/1-1293 DNKGKSLLSG NHIAYDYHPP ADKLYVGSRV VAKYKDGNQV WLYAGIVAET 301 350 ENSTTRP00000006593/1-1282 XXXXXXXXFL IFFDDGYASY VTQSELYPIC RPLKKTWEDI EDISCRDFIE ENSP00000271640/1-1291 PNVKNKLRFL IFFDDGYASY VTQSELYPIC RPLKKTWEDI EDISCRDFIE ENSBTAP00000000107/1-1294 PNVKNKLRFL IFFDDGYASY VTQSELYPIC RPLKKTWEDI EDISCRDFIE bmy_11136T0/1-1164 PNVKNKLRFL IFFDDGYASY VTQSELYPIC RPLKKTWEDI EDISCRDFIE BACU007237/1-1293 PNVKNKLRFL IFFDDGYASY VTQSELYPIC RPLKKTWEDI EDISCRDFIE 351 400 ENSTTRP00000006593/1-1282 EYITAYPNRP MVLLKSGQLI KTEWEGTWWK SRVEEVDGSL VRILFL---- ENSP00000271640/1-1291 EYVTAYPNRP MVLLKSGQLI KTEWEGTWWK SRVEEVDGSL VRILFL---- ENSBTAP00000000107/1-1294 EYITAYPNRP MVLLKSGQLI KTEWEGTWWK SRVEEVDGSL VRILFL---- bmy_11136T0/1-1164 EYITAYPNRP MVLLKSGQLI KTEWEGTWWK SRVEEVDGSL VRILFLVLFF BACU007237/1-1293 EYITAYPNRP MVLLKSGQLI KTEWEGTWWK SRVEEVDGSL VRILFL---- 401 450 ENSTTRP00000006593/1-1282 ---------D DKRCEWIYRG STRLEPMFSM KTSSASTVEK KQGGQLRTRP ENSP00000271640/1-1291 ---------D DKRCEWIYRG STRLEPMFSM KTSSASALEK KQ-GQLRTRP ENSBTAP00000000107/1-1294 ---------D DKRCEWIYRG STRLEPMFSM KTSSASALEK KQGGQLRTRP bmy_11136T0/1-1164 PRVLEAGIWD DKRCEWIYRG STRLEPMFSM KTSSASALEK KQGGQLRTRP BACU007237/1-1293 ---------D DKRCEWIYRG STRLEPMFSM KTSSASALEK KQGGQLRTRP 451 500 ENSTTRP00000006593/1-1282 NXXAVRSKGP VVQYTQDLTS TGTQFKPVEP PQPTA---PP APPAPPAPPL ENSP00000271640/1-1291 NMGAVRSKGP VVQYTQDLTG TGTQFKPVEP PQPTA---PP APPFPPAPPL ENSBTAP00000000107/1-1294 NMGAVRSKGP VVQYTQDLTS TGTQFKPMEP PQPTA---PP APPAPPGPAL bmy_11136T0/1-1164 NMGAVRSKGP VVQYTQDLTS TGTQFKPVEP PQPTAPPAPP APPAPPGPPL BACU007237/1-1293 NMGAVRSKGP VVQYTQDLTS TGTQFKPVEP PQPTAPPAPP APPAPPGPPL 501 550 ENSTTRP00000006593/1-1282 SPQAGDSD-L ESQLAQSRKQ VAKKSTSFRP GSVGSGHSSP TSPALSENAP ENSP00000271640/1-1291 SPQAGDSD-L ESQLAQSRKQ VAKKSTSFRP GSVGSGHSSP TSPALSENVS ENSBTAP00000000107/1-1294 SPQAGDSD-L EGQLAQSRKQ VAKKSTSFRP GSVGSGHSSP TSPALSENAP bmy_11136T0/1-1164 SPQAGDSESL ESQLAQSRKQ VAKKSTSFRP GSVGSGHSSP TSPALSENAP BACU007237/1-1293 SPQAGDSESL ESQLAQSRKQ VAKKSTSFRP GSVGSGHSSP TSPALSENAP 551 600 ENSTTRP00000006593/1-1282 GGKPGISQTH RSRLGST-SA PAP---PAPP APPAFHGMLE RAPAEP-YRA ENSP00000271640/1-1291 GGKPGINQTY RSPLGSTASA PAPSALPAPP APPVFHGMLE RAPAEPSYRA ENSBTAP00000000107/1-1294 GGKPGINQTY RSPLGSTTSA PAP---PAPP APPAFHGMLE RAPAEPSYRA bmy_11136T0/1-1164 GGKPGISQTH RSPLGSTTSA PAP---TAPP APPAFHGMLE RAPAEPSYRA BACU007237/1-1293 GGKPGISQTH RSPLGSTTSA PAP---PAPP APPAFHGMLE RAPAEPSYRA 601 650 ENSTTRP00000006593/1-1282 PMEKLFYLPH VCSYTCLSRV RPMRNEQYRG KNPLLVPLLY DFRRMTARRR ENSP00000271640/1-1291 PMEKLFYLPH VCSYTCLSRV RPMRNEQYRG KNPLLVPLLY DFRRMTARRR ENSBTAP00000000107/1-1294 PMEKLFYLPH VCSYTCLSRV RPMRSEQYRG KNPLLVPLLY DFRRMTARRR bmy_11136T0/1-1164 PMEKLFYLPH VCSYTCLSRV RPMRNEQYRG KNPLLVPLLY DFRRMTARRR BACU007237/1-1293 PMEKLFYLPH VCSYTCLSRV RPMRNEQYRG KNPLLVPLLY DFRRMTARRR 651 700 ENSTTRP00000006593/1-1282 VNRKMGFHVI YKTPCGLCLR TMQEIERYLF ETGCDFLFLE MFCLDPYVLV ENSP00000271640/1-1291 VNRKMGFHVI YKTPCGLCLR TMQEIERYLF ETGCDFLFLE MFCLDPYVLV ENSBTAP00000000107/1-1294 VNRKMGFHVI YKTPCGLCLR TMQEIERYLF ETGCDFLFLE MFCLDPYVLV bmy_11136T0/1-1164 VNRKMGFHVI YKTPCGLCLR TMQEIERYLF ETGCDFLFLE MFCLDPYVLV BACU007237/1-1293 VNRKMGFHVI YKTPCGLCLR TMQEIERYLF ETGCDFLFLE MFCLDPYVLV 701 750 ENSTTRP00000006593/1-1282 DRKFQPYKPF YYILDITYGK EDVPLSCVNE IDTTPPPQVA YSKERIPGKG ENSP00000271640/1-1291 DRKFQPYKPF YYILDITYGK EDVPLSCVNE IDTTPPPQVA YSKERIPGKG ENSBTAP00000000107/1-1294 DRKFQPYKPF YYILDITYGK EDVPLSCVNE IDTTPPPQVA YSKERIPGKG bmy_11136T0/1-1164 DRKFQPYKPF YYILDITYGK EDVPLSCVNE IDTTPPPQVA YSKERIPGKG BACU007237/1-1293 DRKFQPYKPF YYILDITYGK EDVPLSCVNE IDTTPPPQVA YSKERIPGKG 751 800 ENSTTRP00000006593/1-1282 VFINTGAEFL VGCDCKDGCR DKSKCTCHQL TVQATACTPG GQINSNSGYQ ENSP00000271640/1-1291 VFINTGPEFL VGCDCKDGCR DKSKCACHQL TIQATACTPG GQINPNSGYQ ENSBTAP00000000107/1-1294 VFINTGPEFL VGCDCKDGCR DKSKCACHQL TIQATACTPG GQINPNSGYQ bmy_11136T0/1-1164 VFINTGPEFL VGCDCKDGCR DKSKCACHQL TIQATACTPG GQINPNSGYQ BACU007237/1-1293 VFINTGPEFL VGCDCKDGCR DKSKCACHQL TIQATACTPG GQINPNSGYQ 801 850 ENSTTRP00000006593/1-1282 YKRLEECLPT GVYECNKRCN CDPNMCTNRL VQHGLQVRLQ LFKTQNKGWG ENSP00000271640/1-1291 YKRLEECLPT GVYECNKRCK CDPNMCTNRL VQHGLQVRLQ LFKTQNKGWG ENSBTAP00000000107/1-1294 YKRLEECLPT GVYECNKRCK CDPNMCTNRL VQHGLQVRLQ LFKTQNKGWG bmy_11136T0/1-1164 YKRLEECLPT GVYECNKRCK CDPNMCTNRL VQHGLQVRLQ LFKTQNKGWG BACU007237/1-1293 YKRLEECLPT GVYECNKRCK CDPNMCTNRL VQHGLQVRLQ LFKTQNKGWG 851 900 ENSTTRP00000006593/1-1282 IRCLDDIAKG SFVCIYAGKI LTDDFADKEG LEMGDEYFAN LDHIESVENF ENSP00000271640/1-1291 IRCLDDIAKG SFVCIYAGKI LTDDFADKEG LEMGDEYFAN LDHIESVENF ENSBTAP00000000107/1-1294 IRCLDDIAKG SFVCIYAGKI LTDDFADKEG LEMGDEYFAN LDHIESVENF bmy_11136T0/1-1164 IRCLDDIAKG SFVCIYAGKI LTDDFADKEG LEMGDEYFAN LDHIESVENF BACU007237/1-1293 IRCLDDIAKG SFVCIYAGKI LTDDFADKEG LEMGDEYFAN LDHIESVENF 901 950 ENSTTRP00000006593/1-1282 KEGYESDVPC SSDSSGVDLK DQEDGNSGTE DPEESNDDSS DDNFCKDEDF ENSP00000271640/1-1291 KEGYESDAPC SSDSSGVDLK DQEDGNSGTE DPEESNDDSS DDNFCKDEDF ENSBTAP00000000107/1-1294 KEGYESDAPC SSDSSGVDLK DQEDGNSGTE DPEESNDDSS DDNFCKDEDF bmy_11136T0/1-1164 KEGYESDAPC SSDSSGVDLK DQEDGNSGTE DPEESNDDSS DDNFCKDEDF BACU007237/1-1293 KEGYESDAPC SSDSSGVDLK DQEDGNSGTE DPEESNDDSS DDNFCKDEDF 951 1000 ENSTTRP00000006593/1-1282 STSSVWRSYA TRRQTRGQKE NGLSEMPSKD SRPPDLGPPR VPVPPSIPVG ENSP00000271640/1-1291 STSSVWRSYA TRRQTRGQKE NGLSETTSKD SHPPDLGPPH IPVPPSIPVG ENSBTAP00000000107/1-1294 STSSVWRSYA TRRQTRGQKE NGLSEMSSKD SRPPDLGPPH IPVPPSIPVG bmy_11136T0/1-1164 STSSVWRSYA TRRQTRGQKE NGLSEMPSKD SRPPDLGPPR VPVPPSIPVG BACU007237/1-1293 STSSVWRSYA TRRQTRGQKE NGLSEMPSKD SRPPDLGPPR VPVPPSIPVG 1001 1050 ENSTTRP00000006593/1-1282 GCNPPSSEET PKNKVASWLS CNSVSEGGFA DSDSRSSFKT SEGGEGHAGG ENSP00000271640/1-1291 GCNPPSSEET PKNKVASWLS CNSVSEGGFA DSDSHSSFKT NEGGEGRAGG ENSBTAP00000000107/1-1294 GCNPPSSEET PKNKVASWLS CNSVSEGGFA DSDSRSSFKT SEGGEGRTGG bmy_11136T0/1-1164 GCNPPSSEET PKNKVASWLS CNSVSEGGFA DSDSRSSFKT SEGGEGHAGG BACU007237/1-1293 GCNPPSSEET PKNKVASWLS CNSVSEGGFA DSDSRSSFKT SEGGEGHAGG 1051 1100 ENSTTRP00000006593/1-1282 GRGEAEKAST SGLGFKDEGD IKQPKKEDPD DRNKMSVVTE SSRNYGYNPS ENSP00000271640/1-1291 SRMEAEKAST SGLGIKDEGD IKQAKKEDTD DRNKMSVVTE SSRNYGYNPS ENSBTAP00000000107/1-1294 SRGEAEKAST SGLGFKDEGD IKQAKKEDPD DRNRMSIVTE SSRNYGYNPS bmy_11136T0/1-1164 GRGEAEKAST SGLGFKDEGD IKQPKKEDPD DRNKMSIVTE SSRNYGYNPS BACU007237/1-1293 GRGEAEKAST SGLGFKDEGD IKQPKKEDPD DRNKMSIVTE SSRNYGYNPC 1101 1150 ENSTTRP00000006593/1-1282 PVKTEGLRRP PSKTSMHQSR RLMASAQSNP DDILTLSSST ESEGESGTSR ENSP00000271640/1-1291 PVKPEGLRRP PSKTSMHQSR RLMASAQSNP DDVLTLSSST ESEGESGTSR ENSBTAP00000000107/1-1294 PVKPEGLRRP PSKTSMHQSR RLMASAQPNP DDILTLSSST ESEGESGTSR bmy_11136T0/1-1164 PVKAEGLRRP PSKTSMHQSR RLMASAQSNP DDILTLSSST ESEGESGTSR BACU007237/1-1293 PVKAEGLRRP PSKTSMHQSR RLMASAQSNP DDILTLSSST ESEGESGTSR 1151 1200 ENSTTRP00000006593/1-1282 KPTAGQTSAT AVDSDDIQTI SSGSEGDDFE DKKNMSGPMK RQVAVKSTRG ENSP00000271640/1-1291 KPTAGQTSAT AVDSDDIQTI SSGSEGDDFE DKKNMTGPMK RQVAVKSTRG ENSBTAP00000000107/1-1294 KPTAGQTSAA AVDSDDIQTI SSGSEGDDFE DKKNMSGPMK RQVAVKSTRG bmy_11136T0/1-1164 KPTAGQTSAT AVDSDDIQTI SSGSEGDDFE DKKNMSGPMK RQVAVKSTRG BACU007237/1-1293 KPTAGQTSAT AVDSDDIQTI SSGSEGDDFE DKKNMSGPMK RQVAVKSTRG 1201 1250 ENSTTRP00000006593/1-1282 FALKSTHGIA IKSTNMASVE KGESAPVRKN TRQFYDGEES CYIIDAKLEG ENSP00000271640/1-1291 FALKSTHGIA IKSTNMASVD KGESAPVRKN TRQFYDGEES CYIIDAKLEG ENSBTAP00000000107/1-1294 FALKSTHGIA IKSTNMASVE KGESAPIRKN TRQFYDGEES CYIIDAKLEG bmy_11136T0/1-1164 FALKSTHGIA IKSTNMASVE KGESAPVRKN TRQFYDGEES CYIIDAKLEG BACU007237/1-1293 FALKSTHGIA IKSTNMASVE KGESAPVRKN TRQFYDGEES CYIIDAKLEG 1251 1300 ENSTTRP00000006593/1-1282 NLGRYLNHSC SPNLFVQNVF VDTHDLRFPW VAFFASKRIR AGTELTWDYN ENSP00000271640/1-1291 NLGRYLNHSC SPNLFVQNVF VDTHDLRFPW VAFFASKRIR AGTELTWDYN ENSBTAP00000000107/1-1294 NLGRYLNHSC SPNLFVQNVF VDTHDLRFPW VAFFASKRIR AGTELTWDYN bmy_11136T0/1-1164 NLGRYLNHSC SPNLFVQNVF VDTHDLRFPW VAFFASKRIR AGTELTWDYN BACU007237/1-1293 NLGRYLNHSC SPNLFVQNVF VDTHDLRFPW VAFFASKRIR AGTELTWDYN 1301 1350 ENSTTRP00000006593/1-1282 YEVGSVEGKE LLCCCGAIEC RGRLL ENSP00000271640/1-1291 YEVGSVEGKE LLCCCGAIEC RGRLL ENSBTAP00000000107/1-1294 YEVGSVEGKE LLCCCGAIEC RGRLL bmy_11136T0/1-1164 YEVGSVEGKE LLCCCGAIEC RGRLL BACU007237/1-1293 YEVGSVEGKE LLCCCGAIEC RGRLL