KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:10:26 2014 Check: 00 ..
Name: ENSP00000378195/1-540 Len: 540 Check: 5871 Weight: 1.00
Name: bmy_12135T0/1-467 Len: 540 Check: 7025 Weight: 1.00
Name: ENSBTAP00000000111/1-540 Len: 540 Check: 7536 Weight: 1.00
Name: BACU013870/1-540 Len: 540 Check: 4579 Weight: 1.00
Name: ENSTTRP00000006914/1-540 Len: 540 Check: 5416 Weight: 1.00
//
1 50
ENSP00000378195/1-540 MNSTGHLQDA PNATSLHVPH SQEGNSTSLQ EGLQDLIHTA TLVTCTFLLA
bmy_12135T0/1-467 ---------- --MAMMPLAL HPPGRRAELG SGLR------ ----------
ENSBTAP00000000111/1-540 MNSTGHLQDV PNTTLLHVPH AQGGNSTSIQ EGLQEPVHTA TLVTCTFLLA
BACU013870/1-540 MNSTDLPQDA PNTTLLRVPH SQGGNSTALQ EDLQDLIHTA TLASCTFLLA
ENSTTRP00000006914/1-540 MNSTDLPQDA PNTTLLHVPH SQGENSTAVQ EDLQDLIHTA TLVSCTFLLA
51 100
ENSP00000378195/1-540 VIFCLGSYGN FIVFLSFFDP AFRKFRTNFD FMILNLSFCD LFICGVTAPM
bmy_12135T0/1-467 -------YGG GVAALR--PP G--------- ---------- ----------
ENSBTAP00000000111/1-540 VIFCLGSYGN FIVFLSFFDP AFRKFRTNFD FMILNLSFCD LFICGVTAPM
BACU013870/1-540 IIFCLGSYGN FIVFLSFFDP AFRKFRTNFD FMVLNLSFCD LFICGVTAPM
ENSTTRP00000006914/1-540 IIFCLGSYGN FIVFLSFFDP AFRKFRTNFD FMVLNLSFCD LFICGVTAPM
101 150
ENSP00000378195/1-540 FTFVLFFSSA SSIPDAFCFT FHLTSSGFII MSLKTVAVIA LHRLRMVLGK
bmy_12135T0/1-467 -------SSA SGIPDAFCFT FHLTSSGFII MSLKTVAVIA LHRLRMVLGK
ENSBTAP00000000111/1-540 FTFVLFFSSA SGIPDTFCFT FHLTSSGFII MSLKTVAVIA LHRLRMVLGK
BACU013870/1-540 FTFVLFFSSA SGIPDAFCFT FHLTSSGFII MSLKTVAVIA LHRLRMVLGK
ENSTTRP00000006914/1-540 FTFVLFFSSA SGIPDAFCFT FHLTSSGFII MSLKTVAVIA LHRLRMVLGK
151 200
ENSP00000378195/1-540 QPNRTASFPC TVLLTLLLWA TSFTLATLAT LKTSKSHLCL PMSSLIAGKG
bmy_12135T0/1-467 QPNRTASFLC TLLLTLLLWA TSFTLATLAT LKTSNSRLCL PMSSLIAREG
ENSBTAP00000000111/1-540 QPNRTASFPC TLLLTLLLWT TSFTLATLAT LKTSKSHLCL PMSSLIAGEG
BACU013870/1-540 QPNRTASFLC TLLLTLLLWA TSFTLATLAT LKTSNSHLCL PMSSLIAREG
ENSTTRP00000006914/1-540 QPNRTASFLC TLLLTLLLWA TSFTLATLAT LKTSKSHLCL PMSSLIAREG
201 250
ENSP00000378195/1-540 KAILSLYVVD FTFCVAVVSV SYIMIAQTLR KNAQVRKCPP VITVDASRPQ
bmy_12135T0/1-467 KAILSLYVVD FTFCVAVVSV SYIMIAQTLR KNAQVRKCPP VITVDASRPQ
ENSBTAP00000000111/1-540 KAILSLYVVD FTFCVAVVFV SYVMIAQTLR KNAQVRKCPA VITVDASRPQ
BACU013870/1-540 KAILSLYVVD FTFCVAVVSV SYIMIAQTLR KNAQVRKCPP VITVDASRPQ
ENSTTRP00000006914/1-540 KAILSLYVVD FTFCVAVVSV SYIMIAQTLR KNAQVRKCPP VITVDASRPQ
251 300
ENSP00000378195/1-540 PFMGVPVQGG GDPIQCAMPA LYRNQNYNKL QHVQTRGYTK SPNQLVTPAA
bmy_12135T0/1-467 PFMGAPVKGG GDPIQCTMPA LYRNQNYNKL QPVQTHGYTK SPNQLPTPAA
ENSBTAP00000000111/1-540 PFMGAPVKGG GEPIQCTMPA LYRNQNYNKL QHVQTHGYTK SPNQLPTPAA
BACU013870/1-540 PFMGAPVKGG GDPIQCTMPA LYRNQNYNKL QHVQTHGYTK SPNQLPTPAA
ENSTTRP00000006914/1-540 PFMGAPVKGG GDPIQCTMPA LYRNQNYNKL QHVQTHGYTK SPNQLATPAA
301 350
ENSP00000378195/1-540 SRLQLVSAIN LSTAKDSKAV VTCVIIVLSV LVCCLPLGIS LVQVVLSSNG
bmy_12135T0/1-467 SRLQLVSAVN LSTAKDSKAV VTCVIIVLSV LVCCLPLGIS LVQVVLSSRG
ENSBTAP00000000111/1-540 SRLQLVSAVN LSTAQDSRAV VTCVIIVLSV LVCCLPLGIS LVQVVLSSNG
BACU013870/1-540 SRLQLVSAVN LSTAKDSKAV VTCVIIVLSV LVCCLPLGIS LVQVVLSSSG
ENSTTRP00000006914/1-540 SRLQLVSAVN LSTAKDSKAV VTCVIIVLSV LVCCLPLGIS LVHVVLSSNG
351 400
ENSP00000378195/1-540 SFILYQFELF GFTLIFFKSG LNPFIYSRNS AGLRRKVLWC LQYIGLGFFC
bmy_12135T0/1-467 SFILYQFELF GFTLVFFKSG LNPFIYSRNS AGLRRKVLWC LQYIGLGFFC
ENSBTAP00000000111/1-540 SFILYQFELL GFTLIFLKSG LNPFIYSRNS AGLRRKVLWC LQYIGLGFFC
BACU013870/1-540 SFILYQFELF GFTLVFFKSG LNPFIYSRNS AGLRRKVLWC LQYIGLGFFC
ENSTTRP00000006914/1-540 SFILYQFELF GFTLVFFKSG LNPFIYSRNS AGLRRKVLWC LQYIGLGFFC
401 450
ENSP00000378195/1-540 CKQKTRLRAM GKGNLEVNRN KSSHHETNSA YMLSPKPQKK FVDQACGPSH
bmy_12135T0/1-467 CKQKTRLRAM GKGNLEVNRN KSSHHETNSA YMLSPKPQKK FVDQACGPSH
ENSBTAP00000000111/1-540 CKQKTRLRAM GKGNLEVNRN KSSHHETNSA YMLSPKPQKK FVDQACGPSH
BACU013870/1-540 CKQKTRLRAM GKGNLEVNRN KSSHHETNSA YVLSPKPQKK FVDQACGPSH
ENSTTRP00000006914/1-540 CKQKTRLRAM GKGNLEVNRN KSSHHETNSA YMLSPKPQKK FVDQACGPSH
451 500
ENSP00000378195/1-540 SKESMVSPKI SAGHQHCGQS SSTPINTRIE PYYSIYNSSP SQEESSPCNL
bmy_12135T0/1-467 SKESVVSPKM SAGHQHYGQS SSTPINTRIE PYYSIYNSSP SQEESIPHNL
ENSBTAP00000000111/1-540 SKESVVSPKM SAGHQHYGQS SSTPINTRIE PYYSIYNSSP SQEESIPHNL
BACU013870/1-540 SKESVVSPKM SAGHQHYGQS SSTPINTRIE PYYSIYNSSP SQEESIPHNL
ENSTTRP00000006914/1-540 SKESVVSPKM SAGHQHYGQS SSTPINTRIE PYYSIYNSSP SQEESIPHNL
501 550
ENSP00000378195/1-540 QPVNSFGFAN SYIAMHYHTT NDLVQEYDST SAKQIPVPSV
bmy_12135T0/1-467 QPVNSFGFAN SYIAMHYHTT NDLMQEYDST SAKQIPVPSV
ENSBTAP00000000111/1-540 QPVNSFGFAN SYIAMHYHTT NDLMQEYDST SAKQIPVPSV
BACU013870/1-540 QPVNSFGFAN SYIAMHYHTT NDLMQEYDST SAKQIPVPSV
ENSTTRP00000006914/1-540 QPVNSFGFAS SYIAMHYHTT NDLMQEYDST SARQIPVPSV