KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:29 2014 Check: 00 .. Name: ENSP00000274008/1-893 Len: 1078 Check: 2184 Weight: 1.00 Name: ENSBTAP00000000136/1-771 Len: 1078 Check: 3810 Weight: 1.00 Name: ENSTTRP00000007746/1-884 Len: 1078 Check: 7736 Weight: 1.00 Name: bmy_02496T0/1-465 Len: 1078 Check: 4042 Weight: 1.00 Name: BACU004198/1-948 Len: 1078 Check: 5168 Weight: 1.00 // 1 50 ENSP00000274008/1-893 MSSKKNRKRL NQSAENGSSL PSAASSCAEA RAPSAGSDFA ATSGTLTVTN ENSBTAP00000000136/1-771 ---QKNRKRL NQSAENGSSS ASAASFSKGA TAS------A VAPGTLVVIN ENSTTRP00000007746/1-884 MSSKKNRKRL NQSAGNGSPS ASAASFSAGP QS-------A VAAGTLVVIN bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 MSSKKNRKRL NQSAGNGSPS ASAASFSAEA TAS------A VAAGTLVVIN 51 100 ENSP00000274008/1-893 LLEKVDDKIP KTFQNSLIHL GLNTMKSANI CIGRPVLLTS LNGKQEVYTA ENSBTAP00000000136/1-771 FLEKVDDKVP KAFQNSLVQL GLNTMKSANI CIGRPVLLTS LDGKQEVYTA ENSTTRP00000007746/1-884 FLEKVDDKVP KAFQNSLVQL GLNTMKSANI CIGRPVLLTS LDGKQEVYTA bmy_02496T0/1-465 ---------- ---------- ----MKSANI CIGRPVLLTS LDGKQEVYTA BACU004198/1-948 FLEK-DNKVP KAFQNSLVQL GLNTMKSANI CIGRPVLLTS LDGKQEVYTA 101 150 ENSP00000274008/1-893 WPMAGFPGGK VGLSEMAQKN VGVRPGDAIQ VQPLVGAVLQ AEEMDVALSD ENSBTAP00000000136/1-771 WPVAGFPGGK VGLSEVAQKN VGVRVGDAIH VQPVLGAVLQ AEELDVALSD ENSTTRP00000007746/1-884 WPVAGFPGGK VGLSEMAQKN VGVRVGDAIH VQPVLGAVLQ AEEMDVALSD bmy_02496T0/1-465 WPVAGFPGGK VGLSEMAQKN VGVRVGDAIH VQPV------ ---------- BACU004198/1-948 WPVAGFPGGK VGLSEMAQKN VGVRVGDAIH VQPVLGAVLQ AEEMDVALSD 151 200 ENSP00000274008/1-893 KDMEINEEEL TGCILRKLDG KIVLPGNFLY CTFYGRPYKL QVLRVKGADG ENSBTAP00000000136/1-771 KNADINEEQL AGCILRKLDG KVVLPGNFLY CTFYGRPCKL QVLRVKGADG ENSTTRP00000007746/1-884 KNADINEEQL TACLLRKLDG KIVLPGNFLY CTFYGRPCKL QVLRVNGADG bmy_02496T0/1-465 ---------- -------LDG KIVLPGNFLY CTFYGRPCKL QVLRVKGADG BACU004198/1-948 KNADINEEQL TNCLLRKLDG KIVLPGNFLY CTFYGRPCKL QVLRVKGADG 201 250 ENSP00000274008/1-893 MILGGPQSDS DTDAQRMAFE QSSMETSSLE LSLQLSQLDL EDTQIPTSRS ENSBTAP00000000136/1-771 TMLRRAQNDS DTAAQGMASE LSSRDPSTLD ISLQLSQLDL EVPRRPASSS ENSTTRP00000007746/1-884 AML-RTLNDS DTVAQGIDFK PSSVETSTLD I--QLSQLGL EVPQNPTSSS bmy_02496T0/1-465 AMLRRAQNDS DAVARGTASK PSSTEAGTLD ISLQLSQLSL EVPPNPASSS BACU004198/1-948 AMLRRAQNDS DAVAWGMASK PSSTEASTLD ISLQLSQLSL EVPPNPASSS 251 300 ENSP00000274008/1-893 TPYKPIDDRI TNKASDVLLD VTQSPGDGSG LMLEEVTGLK CNFESAREGN ENSBTAP00000000136/1-771 TPYKP-DDRM MNKAGGISSD GTQSPGTGSG RGLEEVTGLE CSFESAREGS ENSTTRP00000007746/1-884 TPYKAGDGRM INKAGGVLSG VTQSPGNGSG LGPEAVTGLK RCSQSAREGN bmy_02496T0/1-465 TPYKPGDGRM INKAGGVSSG VTQSPGNGSG LGLEAVTGLE CRSQSAREGN BACU004198/1-948 TPYKPGDGRM INKAGGVSSG VTQSPGNGSG LGLEAVTGLE HRSQSAREEN 301 350 ENSP00000274008/1-893 EQLTEEERLL KF-SIGAKCN TDTFYFISST TRVNFTEIDK NSKEQDNQFK ENSBTAP00000000136/1-771 EQPVNEERLL KSPSVGAQSN TDTFYFISSK TRVSFTKNRT NSKDQANQLK ENSTTRP00000007746/1-884 EQPVNEERLL KSPSVGAQCN TDTFYFISST TRVNFTKIRT NSKDQDNQLK bmy_02496T0/1-465 EQPVNEERLL KSPSVGAQCN TDTFYFISST TRVNFTKIRT NSKDQGNQLK BACU004198/1-948 EQPVNEERLL KSPGVGAQCN TDTFYFISST TRVNFTKIRT NSKDQGNQLK 351 400 ENSP00000274008/1-893 VTYDMIGGLS SQLKAIREII ELPLKQPELF KSYGIPAPRG VLLYGPPGTG ENSBTAP00000000136/1-771 VTYDMIGGLN SQLKEIREII ELPLKQPELF KSYGIPPPRG VLLYGPPGTG ENSTTRP00000007746/1-884 VTYDMIGGLN SQLKEIREII ELPLKQPELF KSYGIPPPRG VLLYGPPGTG bmy_02496T0/1-465 VTYDMIGGLN SQLKGIREII ELPLKQPELF KSYGIPPPRG VLLYGPPGTG BACU004198/1-948 VTYDMIGGLN SQLKGIREII ELPLKQPELF KSYGIPPPRG VLLYGPPGTG 401 450 ENSP00000274008/1-893 KTMIARAVAN EVGAYVSVIN GPEIISKFYG ETEAKLRQIF AEATLRHPSI ENSBTAP00000000136/1-771 KTMIARAVAN EVGAYVSVIN GPEIISKFYG ETEARLRQIF AEATLRHPSI ENSTTRP00000007746/1-884 KTMIARAVAN EVGAYVSVIN GPEIISKFYG ETEARLRQIF AEATLRHPSI bmy_02496T0/1-465 KTMIARAVAN EVGAYVSVIN GPEIISKFYG ETEARLRQIF AEATLRHPSI BACU004198/1-948 KTMIARAVAN EVGAYVSVIN GPEIISK--- ---------- ------HPSI 451 500 ENSP00000274008/1-893 IFIDELDALC PKREGAQNEV EKRVVASLLT LMDGIGSEVS EGQVLVLGAT ENSBTAP00000000136/1-771 IFIDELDALC PKREGAQNEV EKRVVASLLT LMDGIGSEGS EGQVLVLGAT ENSTTRP00000007746/1-884 IFIDELDALC PKREGAQNEV EKRVVASLLT LMDGIGSEGS EGQVLVLGAT bmy_02496T0/1-465 IFIDELDALC PKREGAQNEV EKRVVASLLT LMDGIGSEGS EGQVLVLGAT BACU004198/1-948 IFIDELDALC PKREGAQNEV EKRVVASLLT LMDGIGSEGS EGQVLVLGAT 501 550 ENSP00000274008/1-893 NRPHALDAAL RRPGRFDKEI EIGVPNAQDR LDILQKLLRR VPHLLTEAEL ENSBTAP00000000136/1-771 NRPHALDAAL RRPGRFDKEI EIGVPNAQDR LDILQKLLRR VPHLLTEAEL ENSTTRP00000007746/1-884 NRPHALDAAL RRPGRFDKEI EIGVPNAQDR LDILEKLLRR VPHLLTEAEL bmy_02496T0/1-465 NRPHALDAAL RRPGRFDKEI EIGVPNAQDR LDILQKLLRR VPHLLTEAEL BACU004198/1-948 NRPHALDAAL RRPGRFDKEI EIGVPNAQDR LDILQKLLLR VPHLLTEAEL 551 600 ENSP00000274008/1-893 LQLANSAHGY VGADLKVLCN EAGLCALRRI LKKQPNLPDV KVAGLVKITL ENSBTAP00000000136/1-771 LQLANSAHGY VGADLKALCN EAGLHALRRV LRRQPNLPDS KMAGLVKITL ENSTTRP00000007746/1-884 LQLANNAHGY VGADLKALCN EAGLHALRRV LRKHPNLPDS KMAGLVKITL bmy_02496T0/1-465 LQLANNAHGY VGADLKALCN EA-------- ---------- ---------- BACU004198/1-948 LQLANNAHGY VGADLKALCN EAGLRALRRV LRKHPNLPDS KMAGLVKITL 601 650 ENSP00000274008/1-893 KDFLQAMNDI RPSAMREIAI DVPN------ ---------- ---------- ENSBTAP00000000136/1-771 KDFLQGMNDI RPSAMREVAV DVPN------ ---------- ---------- ENSTTRP00000007746/1-884 KDFLQGMNDI RPSAMREVAI DVPN------ ---------- ---------- bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 QDFLQGMNDI RPSAMREVAI DVPNSRCLGK GDKNQLREQV DTVVAPGPRR 651 700 ENSP00000274008/1-893 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000136/1-771 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007746/1-884 ---------- ---------- ---------- ---------- ---------- bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 CPYLHRTTGD TERKYHLRYY KTGTCIHETD ARGHCVKNGL HCAFAHGPLD 701 750 ENSP00000274008/1-893 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000136/1-771 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007746/1-884 ---------- ---------- ---------- ---------- ---------- bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 LRPPVCDIRE LQAQEALQNG QLSAGDGVPD LQPGVLASQA LMEKILGEDP 751 800 ENSP00000274008/1-893 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000136/1-771 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007746/1-884 ---------- ---------- ---------- ---------- ---------- bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 RWQGNPAAAA GAGGSSLSVK CPHGGPRRPL YRCGFECKGY YGTTPYSTAD 801 850 ENSP00000274008/1-893 --------VS WSDIGGLESI KLKLEQAVEW PLKHPESFIR MGIQPPKGVL ENSBTAP00000000136/1-771 --------VS WSDIGGLENV KLKLKQAVEW PLKHPESFTQ MGIQPPKGVL ENSTTRP00000007746/1-884 --------VS WSDIGGLGNI KLKLKQAVEW PLKHPESFTQ MGIQPPKGVL bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 GKLRSYNAVS WSDIGGLGNI KLKLKQAVEW PLKHSESFTQ MGIQPPKGVL 851 900 ENSP00000274008/1-893 LYGPPGCSKT MIAKALANES GLNFLAIKGP ELMNKYVGES ERAVRETFRK ENSBTAP00000000136/1-771 LYGPPGCSKT MIAKALANES GLNFLAIKGP ELMNKYVGES ERAVREIFRK ENSTTRP00000007746/1-884 LYGPPGCSKT MIAKALANES GLNFLAVKGA ELMNKYVGES ERAVREIFRK bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 LYGPPGCSKT MIAKALANES GLNFLAVKGP ELMNKYVGES ERAVREIFRK 901 950 ENSP00000274008/1-893 ARAVAPSIIF FDELDALAVE RGSSLGAGNV ADRVLAQLLT EMDGIEQLKD ENSBTAP00000000136/1-771 ARAVAPSIIF FDELDALAVE RGSSSGAGNV ADRVLAQLLT EMDGIEQLKN ENSTTRP00000007746/1-884 ARAVAPSIIF FDELDALAVE RGSSSGAGNV ADRVLAQLLT EMDGIEQLKD bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 ARAVAPSIIF FDELDALAVE RGSSSGAGNV ADRVLAQLLT EMDGIEQLKD 951 1000 ENSP00000274008/1-893 VTILAATNRP DRIDKALMRP GRIDRIIYVP LPDAATRREI FKLQFHSMPV ENSBTAP00000000136/1-771 VTILAATNRP DRIDK----- ---------- ---------- ---------- ENSTTRP00000007746/1-884 VTILAATNRP DRIDKALMRP GRIDRIIYVP LPDAETRREI FNLQFHSMPI bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 VTILAATNRP DRIDKV---- ---------- ---------- ---------- 1001 1050 ENSP00000274008/1-893 SNEVDLDELI LQTDAYSGAE IVAVCREAAL LALEEDIQAN LIMKRHFTQA ENSBTAP00000000136/1-771 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007746/1-884 SNDVDLNELI LQTDTYSGAE IIAVCREAAL LALEEDIQAN CIMKKHFTQA bmy_02496T0/1-465 ---------- ---------- ---------- ---------- ---------- BACU004198/1-948 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000274008/1-893 LSTVTPRIPE SLRRFYEDYQ EKSGLHTL ENSBTAP00000000136/1-771 ---------- ---------- -------- ENSTTRP00000007746/1-884 LSTVTPRLPE SLRRFYEDYQ NKSGLHAL bmy_02496T0/1-465 ---------- ---------- -------- BACU004198/1-948 ---------- ---------- RKKAVWAF