KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:10:40 2014 Check: 00 .. Name: ENSTTRP00000004411/1-471 Len: 471 Check: 7677 Weight: 1.00 Name: bmy_18318T0/1-381 Len: 471 Check: 7280 Weight: 1.00 Name: ENSP00000364145/1-471 Len: 471 Check: 665 Weight: 1.00 Name: ENSBTAP00000000198/1-471 Len: 471 Check: 9363 Weight: 1.00 // 1 50 ENSTTRP00000004411/1-471 MSREMGELTQ TRLQKIWIPH NGGNSRLQRR RGSSIPQFTN SPTMVIMVGL bmy_18318T0/1-381 ---------- ---------- ---------- ---------- ---MVIMVGL ENSP00000364145/1-471 MSPEMGELTQ TRLQKIWIPH SSGSSRLQRR RGSSIPQFTN SPTMVIMVGL ENSBTAP00000000198/1-471 MSQEMGELTQ TRLQKIWIPH NNGNSRLQRR RGSSIPQFTN SPTMVIMVGL 51 100 ENSTTRP00000004411/1-471 PARGKTYIST KLTRYLNWIG TPTKVFNLGQ YRREAVSYKN YEFFLPDNME bmy_18318T0/1-381 PARGKTYIST KLTRYLNWIG TPTK----GQ YRREAVSYKN YEFFLPDNME ENSP00000364145/1-471 PARGKTYIST KLTRYLNWIG TPTKVFNLGQ YRREAVSYKN YEFFLPDNME ENSBTAP00000000198/1-471 PARGKTYIST KLTRYLNWIG TPTKVFNLGQ YRREAVSYKN YEFFLPDNME 101 150 ENSTTRP00000004411/1-471 ALLIRKQCAI AALKDVHNYL SCEEGHVAVF DATNTTRERR SLILQFAKEH bmy_18318T0/1-381 ALLIRKQCAL AALKD----- --------VF DATNTTRERR SLILQFAKEH ENSP00000364145/1-471 ALQIRKQCAL AALKDVHNYL SHEEGHVAVF DATNTTRERR SLILQFAKEH ENSBTAP00000000198/1-471 ALLIRKQCAL AALKDVHSYL SHEEGRVAVF DATNTTRERR SLILQFAKEH 151 200 ENSTTRP00000004411/1-471 GYKVFFIESI CNDPDVIAEN IRQVKLGSPD YIDCDHEKVL EDFLKRIECY bmy_18318T0/1-381 GYKVFFIESI CNDPDVIAEN IRPLHHQPLS ---C------ -------PCS ENSP00000364145/1-471 GYKVFFIESI CNDPGIIAEN IRQVKLGSPD YIDCDREKVL EDFLKRIECY ENSBTAP00000000198/1-471 GYKVFFIESI CNDPDVIAEN IRQVKLGSPD YIDCDREKVL EDFLKRIECY 201 250 ENSTTRP00000004411/1-471 EVNYQPLDDE LDSHLSYIKI FDVGTRYMVN RLQDHIQSRT VYYLMNIHVT bmy_18318T0/1-381 CLGWPS---- ---HLSYIKI FDVGTRYMVN RVQDHIQSRT VYYLMNIHVT ENSP00000364145/1-471 EVNYQPLDEE LDSHLSYIKI FDVGTRYMVN RVQDHIQSRT VYYLMNIHVT ENSBTAP00000000198/1-471 EVNYQPLDDE LDSHLSYIKI FDVGTRYMVN RVQDHIQSRT VYYLMNIHVT 251 300 ENSTTRP00000004411/1-471 PRSIYLCRHG ESELNLRGRI GGDSGLSARG KQYAYALANF IQSQGISSLK bmy_18318T0/1-381 PRSIYLCRHG ESELNLRGRI GGDSGLSARG KQYAYALANF IQSQGISSLK ENSP00000364145/1-471 PRSIYLCRHG ESELNIRGRI GGDSGLSVRG KQYAYALANF IQSQGISSLK ENSBTAP00000000198/1-471 PRSIYLCRHG ESELNLRGRI GGDSGLSARG KQYAYALANF IQSQGISSLK 301 350 ENSTTRP00000004411/1-471 VWTSHMKRTI QTAEALGVPY EQWKALNEID AXXXXXXXXX XXXXXXXXXX bmy_18318T0/1-381 VWTSHMKRTI QTAEALGVPY EQWKALNEID AGVCEEMTYE EIQEHYPEEF ENSP00000364145/1-471 VWTSHMKRTI QTAEALGVPY EQWKALNEID AGVCEEMTYE EIQEHYPEEF ENSBTAP00000000198/1-471 VWTSHMKRTI QTAEALGIPY EQWKALNEID AGVCEEMTYE EIQEHYPEEF 351 400 ENSTTRP00000004411/1-471 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18318T0/1-381 ALRDQDKYRY RYPKGE---- ---RLEPVIM ELERQENVLV ICHQAVMRCL ENSP00000364145/1-471 ALRDQDKYRY RYPKGESYED LVQRLEPVIM ELERQENVLV ICHQAVMRCL ENSBTAP00000000198/1-471 ALRDQDKYRY RYPKGESYED LVQRLEPVIM ELERQENVLV ICHQAVMRCL 401 450 ENSTTRP00000004411/1-471 XXXXXXXXXX ELPYLRCPLH TVLKLTPVAY XXXXXXXXXX XXXXXXXXXX bmy_18318T0/1-381 LAYFLDKSSD ELPYLRCPLH TVLKLTPVAY GCKVESIYLN VEAVNTHREK ENSP00000364145/1-471 LAYFLDKSSD ELPYLKCPLH TVLKLTPVAY GCKVESIYLN VEAVNTHREK ENSBTAP00000000198/1-471 LAYFLDKSSD ELPYLKCPLH TVLKLTPVAY GCKVESIYLN VEAVNTHREK 451 500 ENSTTRP00000004411/1-471 XXNVDVSREP EEALDTVPAH Y bmy_18318T0/1-381 PENVDVSREP EEALDTVPAH Y ENSP00000364145/1-471 PENVDITREP EEALDTVPAH Y ENSBTAP00000000198/1-471 PENVDITREP EEALDTVPAH Y