KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:10:46 2014  Check: 00 ..

 Name: BACU006877/1-224          Len:    251  Check:  9033  Weight:  1.00
 Name: bmy_13527T0/1-184         Len:    251  Check:  488  Weight:  1.00
 Name: ENSP00000444350/1-236     Len:    251  Check:  8725  Weight:  1.00
 Name: ENSBTAP00000000214/1-222  Len:    251  Check:  4885  Weight:  1.00

//


                          1                                                   50
BACU006877/1-224          ---------- ----MLPAQE AAKLYHTNYV RNSRAIGVLW AIFTICFAIV 
bmy_13527T0/1-184         MPGAAAAAAA AAA-MLPAQE AAKLYHTNYV RNSRAIGVLW AIFTICFAIV 
ENSP00000444350/1-236     MPGAAAAAAA AAAAMLPAQE AAKLYHTNYV RNSRAIGVLW AIFTICFAIV 
ENSBTAP00000000214/1-222  ---------- ----MLPAQE AAKLYHTNYV RNSRAIGVLW AIFTICFAIV 


                          51                                                 100
BACU006877/1-224          NVVCFIQPYW IGDGVDTPQA GYFGLFHYCI GNGFSRELTC RGSFTDFSTL 
bmy_13527T0/1-184         NVVCFIQPYW IGDGVDTPQA GYFGLFHYCI GNGFSRELTC RGSFTDFSTL 
ENSP00000444350/1-236     NVVCFIQPYW IGDGVDTPQA GYFGLFHYCI GNGFSRELTC RGSFTDFSTL 
ENSBTAP00000000214/1-222  NVVCFIQPYW IGDGVDTPQA GYFGLFHYCI GNGFSRELTC RGSFTDFSTL 


                          101                                                150
BACU006877/1-224          PSGAFKAASF FIGLSMMLII ACIICFTLFF FCNTATVYKI CAWMQLTSGE 
bmy_13527T0/1-184         PSGAFKAASF FIGLSMMLII ACIICFTLFF FCNTATVYKI CAWMQLTSG- 
ENSP00000444350/1-236     PSGAFKAASF FIGLSMMLII ACIICFTLFF FCNTATVYKI CAWMQLTSGD 
ENSBTAP00000000214/1-222  PSGAFKAASF FIGLSMMLII ACIICFTLFF FCNTATVYKI CAWMQLTSAA 


                          151                                                200
BACU006877/1-224          CALTSAEAGG PGALEPGRDG RGGRARLWGP SNLNPLRREP LEAGIPGVPQ 
bmy_13527T0/1-184         --VTFKILMA RG-------- -------FCL SGSLTLCFHN DKDYE----- 
ENSP00000444350/1-236     CLVLFDLHFP DG-------- -------WDS DEVKRMCGEK TDKYTLGACS 
ENSBTAP00000000214/1-222  CLVLGCMIFP DG-------- -------WDS DEVKRMCGEK TDKYTLGACS 


                          201                                                250
BACU006877/1-224          PRHQ------ RLVPGLSRTS KVWGTPPRGT RWRQGGCWAE SATN------ 
bmy_13527T0/1-184         ---------- EMLENILM-- ---------- ---------- ---------- 
ENSP00000444350/1-236     VRWAYILAII GILDALILSF LAFVLGNRQD SLMAEELKAE NKVLLSQYSL 
ENSBTAP00000000214/1-222  VRWAYILAII GILDALILSF LAFVLGNRQD SLMAEELKAE NKDILFHYGL 


                          251                                                300
BACU006877/1-224          - 
bmy_13527T0/1-184         - 
ENSP00000444350/1-236     E 
ENSBTAP00000000214/1-222  S