KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:48 2014 Check: 00 .. Name: ENSP00000376213/1-1367 Len: 1602 Check: 6461 Weight: 1.00 Name: ENSBTAP00000000218/1-1331 Len: 1602 Check: 8191 Weight: 1.00 Name: ENSTTRP00000011741/1-1337 Len: 1602 Check: 387 Weight: 1.00 Name: bmy_02625T0/1-1256 Len: 1602 Check: 9490 Weight: 1.00 Name: BACU016664/1-1502 Len: 1602 Check: 8415 Weight: 1.00 // 1 50 ENSP00000376213/1-1367 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000218/1-1331 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011741/1-1337 ---------- ---------- ---------- ---------- ---------- bmy_02625T0/1-1256 ---------- ---------- ---------- ---------- ---------- BACU016664/1-1502 MAAQGLKPKP FTCLKGALGL GGGPVFSLAC DLKGFLETID LAPTCRFSGK 51 100 ENSP00000376213/1-1367 ---------- ---------- --------MT LQGRA--DLS GNQGNAAGRL ENSBTAP00000000218/1-1331 ---------- ---------- --------LP PTGRA--DPP RNQDNAASNT ENSTTRP00000011741/1-1337 ---------- ---------- --------LP PTGRA--EPP RNQSKAASNT bmy_02625T0/1-1256 ---------- ---------- MQQATQLQVS PSGQSSYQPV RNLQGKAGTL BACU016664/1-1502 KALTAPGPGQ AELSHLGAKT MQQATQLQVS PSGQSPYQPV RNLQGKAGTL 101 150 ENSP00000376213/1-1367 ---------- ATVHEPVVTQ W----AVHPP ---------- APAHPSLLDK ENSBTAP00000000218/1-1331 ---------- ATG----VTQ WAELLSVHRQ ---------- FPPDPSLQDK ENSTTRP00000011741/1-1337 ---------- ATGHEPGVTQ WEELLSARP- ---------- -----NLQGK bmy_02625T0/1-1256 RPQLQVSPSG KSSYQPVPNL QDKVGTPRPQ LQVSLSGQSS YQPVRNLQGK BACU016664/1-1502 RPQLQVSLSG QSSYRPVPNL QDKVGTPHPQ LQVSLSGQSS YRPVRNLQGK 151 200 ENSP00000376213/1-1367 MEKAPPQPQH EGLKSKEHLP QQPAEGKTAS RRVPRLRAVV ESQAFKNILV ENSBTAP00000000218/1-1331 PGTLHPQPQS EPPASKETLL EQPDKDKTVA RRVPRLRAVV ESQAFRNVLV ENSTTRP00000011741/1-1337 AGTLHPRPRH EPPASEETLV QQPDKDETVA HHVPCLRAAV ESQTFKNVLV bmy_02625T0/1-1256 AGTLRPQPQH EPPASKETLL QQPDKDKMVT HRTPRLRAVV ESQAFKNVLV BACU016664/1-1502 AGTLRPQPQH EPPASKETLL QQPGKDKMVT HRIPRLRAVV ESQAFKNVLV 201 250 ENSP00000376213/1-1367 DEMDMMHARA ATLIQANWRG YWLRQKLISQ MMAAKAIQEA WRRFNKRHIL ENSBTAP00000000218/1-1331 DEMDIMVSRA ATLIQACWRG YRLRQKLISQ MMAAKAIQAS WRRFNTRRLL ENSTTRP00000011741/1-1337 DEMDMMLSHA ATLIQANWRG YRLRQKVISQ VMVTKAIQEA WRRFSTRCLL bmy_02625T0/1-1256 DEMDMMLSHA ATLIQAKWRG YRLRQKLISQ MLAAKAIQEA WRRFNTRCLL BACU016664/1-1502 DEMDMMLSHA ATLIQAKWRG YQLRQKLISQ MMAAKAIQEA WRRFNTRCLL 251 300 ENSP00000376213/1-1367 HSSKSLVKKT RAEEGDIPYH APQQVRFQHP EENR-LLSPP IMVNKETQFP ENSBTAP00000000218/1-1331 RAGKAMEKKA KVEERDIPYH PPQQVRFQHP EEGKSLLAQP TMVSKETQFP ENSTTRP00000011741/1-1337 QSGKTVEKKA KVEERDIPYH SPRQVRFQHL EEGKSLLAQP TMVSKETQFP bmy_02625T0/1-1256 QSGKTVEKKA KVEEGDIPYH PPQQVRFQHP EERKSLLAQP TMVSKETQFP BACU016664/1-1502 QSGKTVEKKA KVEEGDIPYH PPQQVRFQHP EEGKSLLAQP TMVSKETQFP 301 350 ENSP00000376213/1-1367 SCDNLVLCRP QSSPLLQPPA AQGTPEPC-V QGPHAARVRG LAFLPHQTVT ENSBTAP00000000218/1-1331 SSDSLAAYTH Q--PALLQSQ GMSPPGTCSA GGPSVT---- --FLPHQTVA ENSTTRP00000011741/1-1337 SSNGLAACTH Q--LALLQSQ GMSQPGTCSV GGPSVA---- --FLPHQTAA bmy_02625T0/1-1256 SSNSLAAYTH Q--LALLQSQ GMSQPGTCSV GGPSVA---- --FLPHQTVA BACU016664/1-1502 SSNSLAAYTH Q--LDLLQSQ GMSQPGTCSV GGPGVA---- --FLPHQTVA 351 400 ENSP00000376213/1-1367 IRFPCPVSLD AKCQPCLLTR TIRSTCLVHI EGDSVKTKRV SARTNKARAP ENSBTAP00000000218/1-1331 IKLPCPMSLD AKCRPCLMTR TVRSTCLVQV EGDPMKTKQI TSRANKAGAM ENSTTRP00000011741/1-1337 IRLPCPVSPE AKCLPCLLTR TIRNACLVHG EGDMMKTKQV TARANKAGGP bmy_02625T0/1-1256 IRLPCPVSLE AKCRPCLLTR TVRNACLVHV EGDTMKTKQV TARANKAGAP BACU016664/1-1502 IRLPCPVSLE VKCRPCLLTR TVRNACLVHV EGDTMKTKQV TARANKAGAP 401 450 ENSP00000376213/1-1367 ETPLSRRYDQ AVTRPSRAQT QGPVKAETPK APFQICPGPM ITKTLLQTYP ENSBTAP00000000218/1-1331 GPPPSARCAQ AVQGQFKTQT QVHTEAEVLK MPPQTGPAPV ITKTLAQPGP ENSTTRP00000011741/1-1337 GPPPSGRCAQ AVQGQLKSQT QAHMEAEVLE GPPQTGPAPV ITKTPAQT-- bmy_02625T0/1-1256 GPPPPGRCAQ AVQVQLKIQT QAHMEAEVLE GPPQTGPAPV ITKTPPQPVP BACU016664/1-1502 GPPPPGRCAQ AVQGQLKIQT QAHMEAAVLE GPPQTGPAPV ITKTPPQPVP 451 500 ENSP00000376213/1-1367 VVSVTLP--Q TYPASTMTTT PPKTSPVPKV T--------- ----IIKTPA ENSBTAP00000000218/1-1331 TMTTSKTPFQ MYPAATITKT SPQPCPVPMV TIAKTPPQMY LAAAMAKIPP ENSTTRP00000011741/1-1337 ---------- ---------- ---------- ---------- ---------- bmy_02625T0/1-1256 TMTTTKTALQ MYSAAPMTKS PAQTCPAATM TKTPLQPCPA TTVTIAKTPP BACU016664/1-1502 TMTTTKTALQ MYPAAPMTKS PAQTCPAATM TKTPLQPCPA TTVTITKTPR 501 550 ENSP00000376213/1-1367 QMYPGPTVTK TAPHTCPMPT MTKIQVH--- ---------- ----PTASRT ENSBTAP00000000218/1-1331 ETDPAAPMTK TAAQTCPAAT MIKVPLQSCL AAMMNKTLPQ PCPMSTVTIT ENSTTRP00000011741/1-1337 ---------- -----CPQAT VTKTLLQSCL AATMNKIQSQ PCPVPVITIT bmy_02625T0/1-1256 QVHPASPVTK TPPQTCPQAT VTKTPLQSCL AAMKSKIQSQ PCPVPVITIT BACU016664/1-1502 QVHPASPVTK TPPQTCPQAT GTKTPLQSCL AAMMSRIQSQ PCPVPVVTIT 551 600 ENSP00000376213/1-1367 GTPRQTCPAT ITAKNRPQVS LLASIMKSLP QVCPGPAMAK TPPQMH---- ENSBTAP00000000218/1-1331 KAPPQVYPQG PV-------- ---------- --------GK IPPQMC---- ENSTTRP00000011741/1-1337 KTPPQPCPAT PVTKTSVQMR PSASMTNTSP RTRPAAMMAK TPPQLCLLPS bmy_02625T0/1-1256 KTPPQPCPAT PVTKTSAQMR PSASMTNTSP QTRPAAMMAK IPPQLCLLPS BACU016664/1-1502 KTPPQPCPAT PVTKTSAQMR PSASMTNTSP QTRPAATMAK IPPQLCLLPS 601 650 ENSP00000376213/1-1367 ---------P VTTPAKNPLQ TC-------- -----LSATM S--------- ENSBTAP00000000218/1-1331 ---------P PATATKTPLQ SC-------- -----LAAMM S--------- ENSTTRP00000011741/1-1337 TFKSPTQTRP AATMTKAPPQ TCAALVTAKT PPQVRLAATM T--------- bmy_02625T0/1-1256 MIKSPTQTRP AATMTKAPPQ TCAVPVTAKT PPQVRPAATM TKTPLQTCQV BACU016664/1-1502 MSKSPTQTRP AATMTKAPPQ TCAVPVTAKT PPQVRLAATM A--------- 651 700 ENSP00000376213/1-1367 ----KTSSQR S--PVGVTK- PSPQTRLPAM ITKTPAQLRS VATILKTLCL ENSBTAP00000000218/1-1331 ----KIMLQ- ---GATVAKT APPQTRLAAM ITKTPAQLRS VATILKTLCL ENSTTRP00000011741/1-1337 ----KTPSHQ T--PVSVTKG PPAQTRLAAM VTKTPAQLRS VAAILRTLCL bmy_02625T0/1-1256 STMAKTPSHQ TLQGVSVTKA PPTQTRLAAM VTKTPAQLRS VATILRTLCL BACU016664/1-1502 ----KTPSHQ TLRGISVTKA PPAQTRLAAM VTKTPAQLRS VASILRTLCL 701 750 ENSP00000376213/1-1367 ASPTVANVKA PPQVAVAAGT PNTSGSIHEN PPKAKATVNV KQAAKVVKAS ENSBTAP00000000218/1-1331 PPSAAGNLKP PFSAAATAGI SDTSSHTCLS GPKARATVNA RQATREVKVL ENSTTRP00000011741/1-1337 PPPAAENLKP PPSALAAAGI PDTSSHTCLS GLKAKAVVNA RQAAGVTKVS bmy_02625T0/1-1256 PPPAAGNLKP SSSAAAAAGI PDTSSHTCLS GPKAKAVVNA RQAAGVTKVS BACU016664/1-1502 PPPAAGNLKP SSSAAAAAGI PDTSSHTCLS GPKAKAVVNA RQAAGVTKVS 751 800 ENSP00000376213/1-1367 SPSYLAEGKI RCLAQPHPGT GVPRAAAELP LEAEKIKTGT QKQAKTDMAF ENSBTAP00000000218/1-1331 SRSYLTEGKV KCFPPSHPGA GAPKPPARPP LEGEKIKAFS QKQGKTETTS ENSTTRP00000011741/1-1337 PHPYLTKGKM KCFPPSHLGA GDPKPTARPP SEGEKIKDFS QKRVKTETAS bmy_02625T0/1-1256 SHSYLTEGKV KCFPPSHLGA GDPKAPARPP SEGEKIKAFS QKRVKTETAS BACU016664/1-1502 SHSYLTEGKV KCFPPSHLGA GDPKAPARPP SEGEKIKAFS QKRVKTETAS 801 850 ENSP00000376213/1-1367 KTSVAVEMAG APSWTKVAEE GDK------- -------PPH VYVPVDMAVT ENSBTAP00000000218/1-1331 DTSMAMEMPG DLTWAKVASD RNKGLAQAHL LAELTKALPQ EHVAAKSTMA ENSTTRP00000011741/1-1337 NISEAMEVPV VSSWSKVAED GSK------- -------LSQ VCEPIETAVA bmy_02625T0/1-1256 SISVAMEVPV VSSWAKVAED GNK---QAHL RTDVVKALPQ VCEPIETAVA BACU016664/1-1502 SISVAMEVPV VSSWAKVAED GNK---QAHL RTDVVKALPQ VCEPVETAVA 851 900 ENSP00000376213/1-1367 -----LPRGQ LAAPLTNASS QRHPPCLSQR PLAAPLTKAS SQGHLPTELT ENSBTAP00000000218/1-1331 Q-GQGYPQAQ P--------- ----P----- ---AAVAQP- ---HLSVCLS ENSTTRP00000011741/1-1337 HLGTCLPQAQ PAPCSTTGSP QARLP----- ---AELTKPP SQAHVSTKLT bmy_02625T0/1-1256 HLGTCLPRAQ PAPCSTTGSP QAHLL----- ---AELTKPL SQAHVSTKVT BACU016664/1-1502 HLGTCLPRAQ PAPCSTTGSP QARLL----- ---AELTKPL SQARVSTKLT 901 950 ENSP00000376213/1-1367 KTPSLAHLDT CLSKMHSQTH LATGAVKVQS QAPLATCLTK TQSRGQPITD ENSBTAP00000000218/1-1331 KTPSQAHLPA KLMKAQSQAQ LTTAVIKVQS QGHLPTGLTK AQSQAQLVTD ENSTTRP00000011741/1-1337 KGPSQGHPPP ELTTALAQSH LS----KVQS QAHLPTTLTQ APSQAHLATE bmy_02625T0/1-1256 KGPSQGHPPP ELATALAQSH LGMCLSKVRS QAHLPTKLTQ AQSQAHLATE BACU016664/1-1502 KGPSQGHPPP ELTTALAQSH LGTCL----- ---------- ---------- 951 1000 ENSP00000376213/1-1367 ITTCLIPAHQ AADLSSNTHS QVLLTGSKVS NHACQRLGGL SAPPWAKPED ENSBTAP00000000218/1-1331 TAKSLYAAHQ AAELSSKTQS QPLLVGFKAS TQPCQHIGAL ---PRAKPED ENSTTRP00000011741/1-1337 TAKSFHAARQ AAELSSKTQS QPLLVEFKAS TQPCQHVGAL ---PRAKPED bmy_02625T0/1-1256 TAKSLHAARQ AAELSSKTQS QPLLVEFKAS TQPCQHIGAL ---PRAKPED BACU016664/1-1502 TAKSLHAARQ AAELSSKTQS QPLLVEFKAS TQPCQHIGAL ---PRAKPED 1001 1050 ENSP00000376213/1-1367 RQTQPQPHGH VPGKTTQGGP CPAACEVQGM LVPPMAPTGH STCNVESWGD ENSBTAP00000000218/1-1331 RLTQLPSHSY VQGRATL-GL HQGASETQNM LVPLLASAGH TTCNAESWGD ENSTTRP00000011741/1-1337 RLTQLLSHIY VQGKATQ-GP RQGASESQNT LVPLLASAGH TTCNVESWGD bmy_02625T0/1-1256 RLTQLLSHSY VQGQATQ-GP RQGASETQNV LVPLLASAGH TTCH------ BACU016664/1-1502 RLTQLLSHSY VQGQATQ-GP RQGASETQNV LVPLLASAGH TTCHVESWGD 1051 1100 ENSP00000376213/1-1367 NGATRAQPSM PGQAVPCQED TVGSLLASLC AEVAGVLASQ EDLRTLLAKA ENSBTAP00000000218/1-1331 GRAARAQPST TSAPPPSQEE LAASQLASLC AELAAVLGSQ EDLRALLAKA ENSTTRP00000011741/1-1337 ----RAQLST SSPAPPCQEE LAASQLASLC AELAALLGSQ ENLRALLAKA bmy_02625T0/1-1256 ---------- ---------- ---------- ---------- ---------- BACU016664/1-1502 RGAAWAQPST TSPAPPCQEE LAASQLASLC AELAGLLGSQ ENLRALLAKA 1101 1150 ENSP00000376213/1-1367 LSQGEVWAAL NQALSKEVLG ATVTKALPQS MLSMALVKAL SWSELRLTLS ENSBTAP00000000218/1-1331 LSQGEVRAAL NQALSKEVLG ATMAKALPQG ILGTVLVKAL SWGELGTSLS ENSTTRP00000011741/1-1337 LSQGKVRAAL DQALSKEVSG ATMAKALPQG ILGTALVKAL SWGKLATSLS bmy_02625T0/1-1256 ---------- ---------- ---------- ---------- ---------- BACU016664/1-1502 LSRGEVRAAL NQALSKEVSG ATMAKALPQG ILGTALVKAL SWGKLATSLS 1151 1200 ENSP00000376213/1-1367 RALSRGELRA ELTKVMQGKL AEVLSKALTE EEWVALSQAL CQGELGALLS ENSBTAP00000000218/1-1331 RALSRG---- ELTKAIQSRL ADVLSKALTE EERATLSQAL CQGELGAVLS ENSTTRP00000011741/1-1337 CTLARGELRA ELPKAIQGRL ADVLSKALME GERATLNQAL CQSELGAVLS bmy_02625T0/1-1256 ---------- ---------- ---------- ---------- ---------- BACU016664/1-1502 CALSRGELRA ELTKAIQGRL ADVLSKALTE EERTTLNQAL CQGELGAVLS 1201 1250 ENSP00000376213/1-1367 QSWCRVALRT GTILPKAASK STGSGVTKTP ALVKVACRRS PSAAWGPSLG ENSBTAP00000000218/1-1331 QSLSQAALRS GVGLPKAASK TMGSGMTVMP APVEVDCRGS LSAAWGPSLG ENSTTRP00000011741/1-1337 QSFSQVALRS GVVLPKAAAK TAGSRVTVMP TLVEVDCKRS PSAAWGPTLG bmy_02625T0/1-1256 ---------- ---------- ---------- ---------- ---------- BACU016664/1-1502 QSFSQAALRS GVVLPKAAAK TAGSRVTAMP TPVEVDCRGS PSAAWGPTLG 1251 1300 ENSP00000376213/1-1367 PVRPQTSKGP ADAGVVGGQS WNRA------ ---------- --WEPARGAA ENSBTAP00000000218/1-1331 PMRLQPSKGP EDTAMSGGQA ---------- --------PG GAWEPAGGTV ENSTTRP00000011741/1-1337 PMRLQPSKGP EDNGVSGSQA WNPARSA--- --RDGTAAPG GAWY------ bmy_02625T0/1-1256 --------GP EDAGVSGGQA WNSAVPSVAV GPRNSTAVPG GAWEPARSTV BACU016664/1-1502 PMRLQPSKGP EDAGVSGGQA WNSAVPSVAV GPRNSTAVPG GAWEPARGTV 1301 1350 ENSP00000376213/1-1367 SWDTWRNKAV VPPRRSGEPM -VSMQAAEEI RILAVITIQA GVRGYLARRR ENSBTAP00000000218/1-1331 PWDVVGSKAA VDPRQPRELV -ASVQAVEKI IIHAAVIIQA CARGFLVRRT ENSTTRP00000011741/1-1337 ---VM---AA VDPRQPGELV TSSAQAVEEI IVHAVVILQA CTRGFLVRRT bmy_02625T0/1-1256 PWDVM---AA VDPRQPGELV -ASVQAVEKI IIHAVGIIQA CTRGFLVRRT BACU016664/1-1502 PWDVM---AA VDPRQPGELV -ASVQAAEKI IIHAVGIIQA CTRGFLVRRT 1351 1400 ENSP00000376213/1-1367 IRLWHRGAMV IQATWRGYRV RRNLAHLCRA TTTIQSAWRG YSTRRDQARH ENSBTAP00000000218/1-1331 IKVWHQWAII IQAAWRGYCV RRDLARLCRA ATIIQAAWRG FVIRQ--SRT ENSTTRP00000011741/1-1337 IKVWHQWAIP IQAAWRGYRL RWDLARLCRA ATVIQAAWRG XXXXX--XXX bmy_02625T0/1-1256 IKVWHQWAIT IQAAWRGYCV RRNLAQLCRA ATIIQAAWRG FCIRR--SCT BACU016664/1-1502 IKVWHQWAIT IQAAWRGYCV RRDLARLCRA ATIIQAAWRG FCTRR--SCT 1401 1450 ENSP00000376213/1-1367 WQMLHPVTWV ELGSRAGVMS DRSWFQDGRA RTVSDHRCFQ SCQAHACSVC ENSBTAP00000000218/1-1331 QQMLLQNVWA KTGS------ --------GA RTTSDHRCFQ SCQPHVCALC ENSTTRP00000011741/1-1337 XXXXXXXXXX XXXX------ --------XX XXXXXXXXXX XXXXXXXXXX bmy_02625T0/1-1256 QQTLLPGMWA EMGS------ --------GA RTTSDHRCFQ SCRPHVCSLC BACU016664/1-1502 QEMLLPGMWA EMGS------ --------GA RTTSDHRCFQ SCRPHVCSLC 1451 1500 ENSP00000376213/1-1367 HSLSSRIGSP PSVVMLVGSS PRTCHTCGRT QPTRVVQGMG QGTEGPGAVS ENSBTAP00000000218/1-1331 QSLTSGLGSP PSVVMLVGSS PRTCHTCGHT LPTRVVHGTG RGAASQAGVP ENSTTRP00000011741/1-1337 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02625T0/1-1256 QSLSSGLGSP PSVVMLVGSS SRTCHTCGHT LPTRVVHGTG QGAAGQAGMP BACU016664/1-1502 QSLSSGLGSP PSAVMLVGSS SRTCHMCGHT QPTRVVHGTG QGAAGQAGMP 1501 1550 ENSP00000376213/1-1367 WASAYQLAAL SPRQPHRQDK AATAIQSAWR ---------- -------GFK ENSBTAP00000000218/1-1331 RGCLTRSTAR A-RPPHHQTK AATAIQSAWR ---------- -------GFV ENSTTRP00000011741/1-1337 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXSGFA bmy_02625T0/1-1256 RGCITRSNPQ SPRQPHHQNK AATAIQSAWR ---------- -------GFT BACU016664/1-1502 RGCTTRSNPR SPRQPHHQNK AATAIQSAWR ---------- -------GFT 1551 1600 ENSP00000376213/1-1367 IRQQMRQQQM AAKIVQATWR GHHTRSCLKN TEALLGPADP SASSRHMHWP ENSBTAP00000000218/1-1331 VR-WLKQQQD AAKKLQATWR GHSTRASL-T TDALLGPA-V WDNSRHTQCP ENSTTRP00000011741/1-1337 VRCQLKQRRL AAKMLQATWR GHCTRASL-T TDALLGPA-A WDNSQHMPWL bmy_02625T0/1-1256 VRCRLKQQQL AAKMLQATWR GHCTRASL-T TDALLGPA-A WDNSQHTQWP BACU016664/1-1502 VRCRLKQQQL AAKMLQATWR GHCTRASL-T TDALLGTA-A WDNSQHTQWP 1601 1650 ENSP00000376213/1-1367 GI ENSBTAP00000000218/1-1331 GV ENSTTRP00000011741/1-1337 GV bmy_02625T0/1-1256 GV BACU016664/1-1502 GV