KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:50 2014 Check: 00 .. Name: ENSTTRP00000013586/1-1410 Len: 1487 Check: 4268 Weight: 1.00 Name: ENSP00000264245/1-1444 Len: 1487 Check: 4360 Weight: 1.00 Name: ENSBTAP00000000253/1-1407 Len: 1487 Check: 3372 Weight: 1.00 Name: bmy_11738T0/1-1486 Len: 1487 Check: 5563 Weight: 1.00 Name: BACU009306/1-1074 Len: 1487 Check: 2656 Weight: 1.00 // 1 50 ENSTTRP00000013586/1-1410 ---------- ---------- ---------- ---------- -----PYVLK ENSP00000264245/1-1444 MKNKGAKQKL KRKGAAS--- --------AF GCDLTEYLES SGQDVPYVLK ENSBTAP00000000253/1-1407 ---------- ---------- ---------- ---------- ----VPYVLK bmy_11738T0/1-1486 MEAQETWRRR RHGGAGHMEA QETWSCRIEE GGDRNTEQEL AEGEVPYVLK BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013586/1-1410 SCAEFIETHG IVDGIYRLSG VTSNIQRLRQ EFGSDQCPDL TREVYLQDIH ENSP00000264245/1-1444 SCAEFIETHG IVDGIYRLSG VTSNIQRLRQ EFGSDQCPDL TREVYLQDIH ENSBTAP00000000253/1-1407 SCAEFIETHG IVDGIYRLSG VTSNIQRLRQ EFGSDQCPDL TREVYLQDIH bmy_11738T0/1-1486 SCAEFIETHG IVDGIYRLSG VTSNIQRLRQ EFGSDQCPDL TREVYLQDIH BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013586/1-1410 CVGSLCKLYF RELPNPLLTY ELYEKFT--- ---------- ---------E ENSP00000264245/1-1444 CVGSLCKLYF RELPNPLLTY ELYEKFT--- ---------- ---------E ENSBTAP00000000253/1-1407 CVGSLCKLYF RELPNPLLTY ELYEKFT--- ---------- ---------E bmy_11738T0/1-1486 CVGSLCKLYF RELPNPLLTY ELYEKFTNHT QVGVPLLEHS LDCFISSLQE BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013586/1-1410 AVSHCPEEGQ LARIQNVIQE LPPSHYRTLE YLIRHLAHIA SFSSKTNMHA ENSP00000264245/1-1444 AVSHCPEEGQ LARIQNVIQE LPPSHYRTLE YLIRHLAHIA SFSSKTNMHA ENSBTAP00000000253/1-1407 AVSHCPEEGQ LARIQNVIQE LPPSHYRTLE YLIRHLAHIA SFSSKTNMHA bmy_11738T0/1-1486 AVSHCPEEGQ LARIQNVIQE LPPSHYRTLE YLIRHLAHIA SFSSKTNMHA BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013586/1-1410 RNLALVWAPN LLRSKEIEAT GCNGDAAFLA VRVQQVVIEF ILNHVDQIFN ENSP00000264245/1-1444 RNLALVWAPN LLRSKEIEAT GCNGDAAFLA VRVQQVVIEF ILNHVDQIFN ENSBTAP00000000253/1-1407 RNLALVWAPN LLRSKEIEAT GCNGDAAFLA VRVQQVVIEF ILNHVDQIFN bmy_11738T0/1-1486 RNLALVWAPN LLRSKEIEAT GCNGDAAFLA VRVQQVVIEF ILNHVDQIFN BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000013586/1-1410 NGAPGSLEND ENRPIMKSLT LPALSLPMKL VSLEEAQARS LATNHPARKE ENSP00000264245/1-1444 NGAPGSLEND ENRPIMKSLT LPALSLPMKL VSLEEAQARS LATNHPARKE ENSBTAP00000000253/1-1407 NGTPGSLEND ENRPIMKSLT LPALSLPMKL VSLEEAQARS LATNHPARKE bmy_11738T0/1-1486 NGAPGSLEND ENRPIMKSLT LPALSLPMKL VSLEEAQARS LATNHPARKE BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000013586/1-1410 RRENSLPEIV PPMGTLFHTV LELPDNKRKL SSKSKKWKSI FNLGRSGSDS ENSP00000264245/1-1444 RRENSLPEIV PPMGTLFHTV LELPDNKRKL SSKSKKWKSI FNLGRSGSDS ENSBTAP00000000253/1-1407 RRENSLPEIV PPMGTLFHTV LELPDNKRKL SSKSKKWKSI FNLGRSGSDS bmy_11738T0/1-1486 RRENSLPEIV PPMGTLFHTV LELPDNKRKL SSKSKKWKSI FNLGRSGSDS BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000013586/1-1410 KSKLSRNGSV FVRGQRLSVE KATIRPAKSM DSLCSVPVEX XXXXXXXXXX ENSP00000264245/1-1444 KSKLSRNGSV FVRGQRLSVE KATIRPAKSM DSLCSVPVEG KETKGNFNRT ENSBTAP00000000253/1-1407 KSKLSRNGSV FVRGQRLSVE KATIRPAKSM DSLCSVPVEG KETKGNFNRT bmy_11738T0/1-1486 KSKLSRNGSV FVRGQRLSVE KATIRPAKSM DSLCSVPVEG KETKGNFNRT BACU009306/1-1074 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000013586/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264245/1-1444 VTTGGFFIPA TKMHSTGTGS SCDLTKQEGE WGQEGMPPGA EGGFDVSSDR ENSBTAP00000000253/1-1407 VTTGGFFIPA AKMHSTSTGS SCDLSKQEGE WGQEGMPAGA EGGFDVGGDR bmy_11738T0/1-1486 VTTGGFFIPA AKMHSTNTGS SCDLSKQEGE WGQEGMPAGA EGGFDVSSDR BACU009306/1-1074 ---------- --MHSTNTGS SCDLSKQEGE WGQEGMPAGA EGGFDVSSDR 451 500 ENSTTRP00000013586/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264245/1-1444 SHLQGAQARP PPEQLKVFRP VEDPESEQTA PKMLGMFYTS NDSPSKSVFT ENSBTAP00000000253/1-1407 SQPQGAQARG PPEQLKVFRP IEDPESEQTA PKMLGMFYTS NDSPSRSVFT bmy_11738T0/1-1486 SQLQGAQARA PPEQLKVFRP IEDPESEQTA PKMLGMFYTS NDGPSKSVFT BACU009306/1-1074 SQLQGAQARA PPEQLKVFRP VEDPESEQTA PKMLGMFYTS NDGPSKSVFA 501 550 ENSTTRP00000013586/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264245/1-1444 SSLFQMEPSP RNQRKALNIS EPFAVSVPLR VSAVISTNST PCRTPPKELQ ENSBTAP00000000253/1-1407 SSLFQMEPSP RHQRKALNIS KPFAVSVPLR VSAVISTNST PCRTPPKELQ bmy_11738T0/1-1486 GSLFQMEPSP RHQRKALNIS KPFAVSVPLR VSAVISTNST PCRTPPKELQ BACU009306/1-1074 SSLFQMEPSP RHQRKALNIS KPFAVSVPLR VSAVISTNST PCRTPPKELQ 551 600 ENSTTRP00000013586/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSVPKKAAL ENIKPGPDAV ENSP00000264245/1-1444 SLSSLEEFSF HGSESGGWPE EEKPLGAETS AASVPKKAGL EDAKAVPEAP ENSBTAP00000000253/1-1407 SLSSLEEFSF QGSDSGDWPE EEKPLSAETS TASVPKKAAL ENTKPGPDTV bmy_11738T0/1-1486 SLSSLEEFSF QGSESGDWPE EEKPLGVETS TASVPKKAAL ENVKPGPDAV BACU009306/1-1074 SLSSLEEFSF QGSESGDWPE EEKPLGVETS TASVPKKAAL ENIKPGPDAV 601 650 ENSTTRP00000013586/1-1410 RALECSKGLP QEPGGQP-EK KTSEHSLGSR HSSELEKKLE AEKAVEEGGE ENSP00000264245/1-1444 GTVECSKGLS QEPGAHLEEK KTPESSLSSQ HLNELEKRPN PEKVVEEGRE ENSBTAP00000000253/1-1407 RTLECSKGLP LEPGTQVEEK KTSESPLGSQ HSSELEKKLD EEKVVEESGE bmy_11738T0/1-1486 RALECSKGLP QEPGGQL-EK KTSEHSLGSR HSSELEKKLN AEKAVEEGGE BACU009306/1-1074 RALECSKGLP QEPGGQL-QK KTSEHSLGSR HSRELEKKLD AEKAVEEGGE 651 700 ENSTTRP00000013586/1-1410 TGQVESSALQ ESPGARGEAV FLHEMDEDDL ANALIWPEIQ QELKIIESEE ENSP00000264245/1-1444 AGEMESSTLQ ESPRARAEAV LLHEMDEDDL ANALIWPEIQ QELKIIESEE ENSBTAP00000000253/1-1407 TSQVAASALQ ENPGARAEAV FLHEMDEDDL VNALIWSEIQ QELKIIESEE bmy_11738T0/1-1486 TGQVESSALQ ESPGARAEAV FLHEMDEDDL ANALIWPEIQ QELKIIESEE BACU009306/1-1074 TGQVESSALQ ESPGARADAV FLHEMDEDDL ANALIWPEIQ QELKIIESEE 701 750 ENSTTRP00000013586/1-1410 ELSSLPPPAL KTGATQPILE SSPGPFASPE PPGSLPCGSA PAPVSAPLEE ENSP00000264245/1-1444 ELSSLPPPAL KTSPIQPILE SSLGPFIPSE PPGSLPCGSF PAPVSTPLEV ENSBTAP00000000253/1-1407 ELSSLAPPAL KISPTQPILE SSPGPFASPE PPGS----ST PAPVSAPLEE bmy_11738T0/1-1486 ELSSLPPPAL QIGATQPILE SSPGPFASPE PPGSLPCGSA PAPVSAPLED BACU009306/1-1074 ELSSLPPPAL QIGATPPILE SSPGPFASPE PPGSLPCGSA PAPVSAPLEE 751 800 ENSTTRP00000013586/1-1410 WTKDPTNQST QGTSAAASRE K--------- SEPEKGQRPD PASLTPLEMV ENSP00000264245/1-1444 WTRDPANQST QGASTAASRE K--------- PEPEQGLHPD LASLAPLEIV ENSBTAP00000000253/1-1407 WTKNPTNQST LGTSTAANRE K--------- PDPEKGQRPD PASLTPLEIV bmy_11738T0/1-1486 WTKDPTNQST QGTSAAANRE KSETTSILHR SEPEKGQRPD PASLTPLEMV BACU009306/1-1074 WTKDPTNQST QGTSAAANRE KSETTSILHR SEPEKGQRPD PASLTPLEMV 801 850 ENSTTRP00000013586/1-1410 PFEKSPPQAA AEVGGPGNLS PLLLPVSPPP PTPLEEAPPV QLLKGAPERE ENSP00000264245/1-1444 PFEKASPQAT VEVGGPGNLS P-PLPPAPPP PTPLEESTPV LLSKGGPERE ENSBTAP00000000253/1-1407 PLEKSSPQTR MEVGAPGNLS P-LLPPAAPP PTPLEEEPRV QLLKSGPERE bmy_11738T0/1-1486 PFEKSSPQAT VEVGGPGNLS PLLLPAPPPP PTPLEEAPPG QLLKGGPERE BACU009306/1-1074 PFEKSSPQAT VEVGGPGNLS PLLLPDPPPP PTPLEEAPLV QLLKGGPERE 851 900 ENSTTRP00000013586/1-1410 DSSGNLRTNP YIDQLKSKGS PGIPSLCQGE EASSEQSEKQ NSKNAASEGK ENSP00000264245/1-1444 DSSRKLRTDL YIDQLKSQDS PEISSLCQGE EATPRHSDKQ NSKNAASEGK ENSBTAP00000000253/1-1407 DSSGNLRTNP YADQMKSKGS PEIPSLCQGD KASSEESEKQ NSKNPAPESK bmy_11738T0/1-1486 DSSGNLRTNP YIDQLKSKGS PGIPSLHQGG EASSEQSEKQ NSKNAASEGK BACU009306/1-1074 DSSGNLRTNP YVDQLKSKGS PGIPSLHQGE EASSEQSEKQ NSKNAASEGK 901 950 ENSTTRP00000013586/1-1410 GSSFPSPTRE VEISPQGEED VAHLVQEPSD CDEDDTVTDI AQHGLEMVEP ENSP00000264245/1-1444 GCGFPSPTRE VEIVSQEEED VTHSVQEPSD CDEDDTVTDI AQHGLEMVEP ENSBTAP00000000253/1-1407 GSSFPSPTRE AEISPQGEED VAHSVQEPSD CDDDDTVTDI AQHGLEMVEP bmy_11738T0/1-1486 GSSFPSPTRE VEISPQGEED VAHLVQEPSD CDEDDTVTDI AQHGLEMVEP BACU009306/1-1074 GSSFPSPTRE VEIPPQGEED VAHLVQEPSD CDEDDTVTDI AQHGLEMVEP 951 1000 ENSTTRP00000013586/1-1410 WEEPQWVTSP LHSPTLKDVQ EAQMQGPQGH RLEKRLSHRP SLRQSHSLDG ENSP00000264245/1-1444 WEEPQWVTSP LHSPTLKDAH KAQVQGLQGH QLEKRLSHRP SLRQSHSLDS ENSBTAP00000000253/1-1407 WEEPQWVTSP LHSPTLKDVQ ETQMQGPQGH RLEKRLSHRP SLRQSHSLDG bmy_11738T0/1-1486 WEEPQWVTSP LHSPTLKDVQ EAQMQGPQGH RLEKRLSHRP SLRQSHSLDG BACU009306/1-1074 WEEPQWVTSP LHSPTLKDVQ EAQMQGPQGH RLEKRLSHRP SLRQSHSLDG 1001 1050 ENSTTRP00000013586/1-1410 KTTVKSQWTL EGSSSSSCAN LEAERNSNPL QPLAPRSEIT GWDEKAMRSF ENSP00000264245/1-1444 KPTVKSQWTL EVPSSSSCAN LETERNSDPL QPQAPRREIT GWDEKALRSF ENSBTAP00000000253/1-1407 KTMVKSQWTL KGSSSSSCAD LEAERNSNPL QPLAPRSEIT GWDEKAKRSF bmy_11738T0/1-1486 KTMVKSQWTL EGSSSSSCAN LEAERNSNPL QPLAPRSEIT GWDEKAMRSF BACU009306/1-1074 KTMVKSQWTL EGSSFSSCAN LEAERNSNPL QPLAPRSETT GWDEKAMRSF 1051 1100 ENSTTRP00000013586/1-1410 QEFSGLKRTE VPHNQKGPGG LQPKSAESSP VSLAEGKELG THLGPHNPQI ENSP00000264245/1-1444 REFSGLKGAE APPNQKGPSG VQPNPAETSP ISLAEGKELG THLGHSSPQI ENSBTAP00000000253/1-1407 QELSGLKRTE VPPKQKAPGG SQPASAESSP VGLAEGKELG PHVGPHNPRV bmy_11738T0/1-1486 QEFSGLKRTE VPHNQKGPGG LQPKSAESSP VSLAEGKELG THLGPHNPQI BACU009306/1-1074 QEFSGLKRTE VPHNQKGPGG LQPTSAESSP VSLAEGKELG THLGPHNPQI 1101 1150 ENSTTRP00000013586/1-1410 EQGSDPGPEN SKENSPGVQD STSPGEHPPK LQLKSTECGP LKGKNRPSSL ENSP00000264245/1-1444 RQGGVPGPES SKESSPSVQD STSPGEHPAK LQLKSTECGP PKGKNRPSSL ENSBTAP00000000253/1-1407 EPGGDPEPDS SKENSPGVQD HTSPGEHPPK FQRKSSEGGA PKGKNRPSSL bmy_11738T0/1-1486 EQGSDPGPEN SNQNSPGVQD STSPGEHPPK LQLKSTECGP PKGKNRPSSL BACU009306/1-1074 EQGSDPGPEN SKEDSPGVQH STSPGEHPPK LQLKSTECGP PKGKNRPSSL 1151 1200 ENSTTRP00000013586/1-1410 NLDSAIPITD VFRFENVASF GSPGMQLSEP GDPKITWMTS SHCKVDPWRV ENSP00000264245/1-1444 NLDPAIPIAD LFWFENVASF SSPGMQVSEP GDPKVTWMTS SYCKADPWRV ENSBTAP00000000253/1-1407 NLDSTIPIID LFRFENAASF GSPEVHLSEP GDPKVTWLTS SHGKVDPWRV bmy_11738T0/1-1486 NLDSAIPITD LFRFENAASF GSPGMQLSEP GDPKITWMTS SHCKVDPWRV BACU009306/1-1074 NLDSAIPITD LFRFENVASF GSPGMQLSEP GDPKITWMTS SHCKVDPWRV 1201 1250 ENSTTRP00000013586/1-1410 YSQDSQDLDI VAHALTGRRN SAPVSVSAVR TSFMVKMCQA RAVPVIPPKI ENSP00000264245/1-1444 YSQDPQDLDI VAHALTGRRN SAPVSVSAVR TSFMVKMCQA RAVPVIPPKI ENSBTAP00000000253/1-1407 YSQDSQDLDM VAHALTGRRN SAPVSVSAVR TSFMVKMCQA RAVPVIPPKI bmy_11738T0/1-1486 YSQDSQDLDI VAHALTGRRN SAPVSVSAVR TSFMVKMCQA RAVPVIPPKI BACU009306/1-1074 YSQDSQDLDI VAHALTGRRN SAPVSVSAVR TSFMVKMCQA RAVPVIPPKI 1251 1300 ENSTTRP00000013586/1-1410 QYTQIPQPLP SQSSEESGAQ PLERNQEEPG STGGTSQKLA QDASLSSLES ENSP00000264245/1-1444 QYTQIPQPLP SQSSGENGVQ PLERSQEGPS STSGTTQKPA KDDSPSSLES ENSBTAP00000000253/1-1407 QYTQIPQPLP SQSSEESGAQ PLERNQEEAG STGGTSQKLT KDDSLSSLES bmy_11738T0/1-1486 QYTQIPQPLP SQSSEESGAQ PLERSQEEPG STGGTSQKLA KDDSLSSLES BACU009306/1-1074 QYTQIPQPLP SQSSEESGAQ PLERSQEEPG STGGTSQKLA KDDSLSSLES 1301 1350 ENSTTRP00000013586/1-1410 PKEEKPKQDT GAIESLPVDA TASRMCEGST LSPEPGLVNL LSTQDAVVQC ENSP00000264245/1-1444 SKEEKPKQDP GAIKSSPVDA TAPCMCEGPT LSPEPGSSNL LSTQDAVVQC ENSBTAP00000000253/1-1407 PREEKPKQDT GAIESLPVDT TASHVCEGPT LPPEPGLANL LTTQDAVVQC bmy_11738T0/1-1486 PKEEKPKQDT GAIESLPMDA TASRMCEGST LSPEPGLVNL LSTQDAVVQC BACU009306/1-1074 PKEEKPKQDT GATESLPVDA TASRMCEGST LSPEPGLVNL LSTQDAVVQC 1351 1400 ENSTTRP00000013586/1-1410 RKRTSETEPS GDNLLSSKIE RPSGGSKPFH RSRPGRPQSL ILFSPPFPIM ENSP00000264245/1-1444 RKRMSETEPS GDNLLSSKLE RPSGGSKPFH RSRPGRPQSL ILFSPPFPIM ENSBTAP00000000253/1-1407 RKRTSETEPS GDNLLSSKIE RSSGGSKPFH RSRPGRPQSL ILFSPPFPIM bmy_11738T0/1-1486 RKRTSETEPS GDNLLSSKIE RPSGGSKPFH RSRPGRPQSL ILFSPPFPIM BACU009306/1-1074 RKRTSETEPS GDNLLSSKIE RPSGGSKPFH RSRPGRPQSL ILFSPPFPIM 1401 1450 ENSTTRP00000013586/1-1410 DHPPPSSTVT DSKVLLSPIR SPTQTISPGL LCGELAENTW VTPEGVTLRN ENSP00000264245/1-1444 DHLPPSSTVT DSKVLLSPIR SPTQTVSPGL LCGELAENTW VTPEGVTLRN ENSBTAP00000000253/1-1407 DHPPPSSTGT DSKVLLSPIR SPTQTISPGL LCGELAENTW VTPEGVTLRN bmy_11738T0/1-1486 DHPPPSSTVT DSKVLLSPIR SPTQTISPGL LCGELAENTW VTPEGVTLRN BACU009306/1-1074 DHPPPSSTVT DSKVLLSPIR SPTQTISPGL LCGELAENTW VTPEGVTLRN 1451 1500 ENSTTRP00000013586/1-1410 KMTIPKNGQR LETSTSCFYQ PQRRSVILDG RSGRQIE ENSP00000264245/1-1444 KMTIPKNGQR LETSTSCFYQ PQRRSVILDG RSGRQIE ENSBTAP00000000253/1-1407 KMTIPKNGQR LETSTSCFYQ PQRRSVILDG RSGRQIE bmy_11738T0/1-1486 KMTIPKNGQR LETSTSCFYQ PQRRSVILDG RSGRQIE BACU009306/1-1074 KMTIPKNGQR LETSTSCFYQ PQRRSVILDG RSGRQIE