KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:10:52 2014 Check: 00 .. Name: BACU016980/1-268 Len: 1510 Check: 5580 Weight: 1.00 Name: ENSBTAP00000000263/1-1497 Len: 1510 Check: 8193 Weight: 1.00 Name: bmy_01971T0/1-831 Len: 1510 Check: 6841 Weight: 1.00 Name: ENSTTRP00000016230/1-1479 Len: 1510 Check: 3926 Weight: 1.00 // 1 50 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 MKPRAECCSP KFWLVLAVLA VSGSRARSQK SPPSIGIAVI LVGTSDEVAI bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 MKPRAECCSP RFWLVLAVLA VSGSRARSQK SPPSIGIAVI LVGTSDEVAI 51 100 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 KDAHEKDDFH HLSVVPRVEL VAMNETDPKS IITRICDLMS DRKIQGVVFA bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 KDAHEKDDFX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 101 150 BACU016980/1-268 ---------- ---------- ---------- -------DES SMFFQFGPSI ENSBTAP00000000263/1-1497 DDTDQEAIAQ ILDFISAQTL TPILGIHGGS SMIMADKDES SMFFQFGPSI bmy_01971T0/1-831 ---------- ---------- ---------- ------MAKS TMF------- ENSTTRP00000016230/1-1479 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXDES SMFFQFGPSI 151 200 BACU016980/1-268 EQQASVMLNI MEEYDWYIFS IVTTYFPGYQ DFVNKIRSTI ENSFVGWELE ENSBTAP00000000263/1-1497 EQQASVMLNI MEEYDWYIFS IVTTYFPGYQ DFVNKIRSTI ENSFVGWELE bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 EQQASVMLNI MEEYDWYIFS IVTTYFPGYQ DFVNKIRSTI ENSFVGWELE 201 250 BACU016980/1-268 EVLLLDMSLD DGDSKIQNQL KKLQSPIILL YCTKEEATYI FEVANSVGLT ENSBTAP00000000263/1-1497 EVLLLDMSLD DGDSKIQNQL KKLQSPIILL YCTKEEATYI FEVANSVGLT bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 EVLLLDMSLD DGDSKIQNQL KKLQSPIILL YCTKEEATYI FEVANSVGLT 251 300 BACU016980/1-268 GYGYTWIVPS LVAGDTDTVP SEFPTGLISV SYDEWDYGLP ARVRDGIAII ENSBTAP00000000263/1-1497 GYGYTWIVPS LVAGDTDTVP SEFPTGLVSV SYDEWDYGLP ARVRDGIAII bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 GYGYTWIVPS LVAGDTDTVP SEFPTGLISV SYDEWDYGLP ARVRDGIAII 301 350 BACU016980/1-268 TTAASDMLSE HSFIPEPKSS CYNTHEKRIY QSNMLN---- ---------- ENSBTAP00000000263/1-1497 TTAASDMLSE HSFIPEPKSS CYNTHEKRIY QSNMLNRYLI NVTFEGRNLS bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 TTAASDMLSE HSFIPEPKSS CYNTHEKRIY QSNMLNRYLI NVTFEGRNLS 351 400 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 FSEDGYQMHP KLVIILLNKE RKWERVGKWK DKSLQMKYYV WPRMCPETEE bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 FSEDGYQMHP KLVIILLNKE RKWERVGKWK DKSLQMKYYV WPRMCPETEE 401 450 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 QEDDHLSIVT LEEAPFVIVE SVDPLSGTCM RNTVPCQKRI ISENKTDEEP bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 QEDDHLSIVT LEEAPFVIVE SVDPLSGTCM RNTVPCQKRI ISENKTDEEP 451 500 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 GYIKKCCKGF CIDILKKISK SVKFTYDLYL VTNGKHGKKI NGTWNGMIGE bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 GYIKKCCKGF CIDILKKISK SVKFTYDLYL VTNGKHGKKI NGTWNGMIGE 501 550 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 VVMKRAYMAV GSLTINEERS EVVDFSVPFI ETGISVMVSR SNGTVSPSAF bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 VVMKRAYMAV GSLTINEERS EVVDFSVPFI ETGISVMVSR SNGTVSPSAF 551 600 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 LEPFSADVWV MMFVMLLIVS AVAVFVFEYF SPVGYNRCLA DGREPGGPSF bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 LEPFSADVWV MMFVMLLIVS AVAVFVFEYF SPVGYNRCLA DGREPGGPSF 601 650 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 TIGKAIWLLW GLVFNNSVPV QNPKGTTSKI MVSVWAFFAV IFLASYTANL bmy_01971T0/1-831 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016230/1-1479 TIGKAIWLLW GLVFNNSVPV QNPKGTTSKI MVSVWAFFAV IFLASYTANL 651 700 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 AAFMIQEEYV DQVSGLSDKK FQRPNDFSPP FRFGTVPNGS TERNIRNNYA bmy_01971T0/1-831 ---------- ---------- -QRPNDFSPP FRFGTVPNGS TERNIRNNYA ENSTTRP00000016230/1-1479 AAFMIQEEYV DQVSGLSDKK FQRPNDFSPP FRFGTVPNGS TERNIRNNYA 701 750 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 EMHAYMGKFN QRGVDDALLS LKTGKLDAFI YDAAVLNYMA GRDEGCKLVT bmy_01971T0/1-831 EMHAYMGKFN QRGVDDALLS LKTGKLDAFI YDAAVLNYMA GRDEGCKLVT ENSTTRP00000016230/1-1479 EMHAYMGKFN QRGVDDALLS LK-GKLDAFI YDAAVLNYMA GRDEGCKLVT 751 800 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 IGSGKVFAST GYGIAIQKDS GWKRQVDLAI LQLFGDGEME ELEALWLTGI bmy_01971T0/1-831 IGSGKVFAST GYGIAIQKDS GWKRQVDLAI LQLFGDGEME ELEALWLTGI ENSTTRP00000016230/1-1479 IGSGKVFAST GYGIAIQKDS GWKRQVDLAI LQLFGDGEME ELEALWLTGI 801 850 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 CHNEKNEVMS SQLDIDNMAG VFYMLGAAMA LSLITFICEH LFYWQFRHCF bmy_01971T0/1-831 CHNEKNEVMS SQLDIDNMAG VFYMLGAAMA LSLITFICEH LFYWQFRHCF ENSTTRP00000016230/1-1479 CHNEKNEVMS SQLDIDNMAG VFYMLGAAMA LSLITFICEH LFYWQFRHCF 851 900 BACU016980/1-268 ---------- ---------- ---------R RVALLSP--- -------LYR ENSBTAP00000000263/1-1497 MGVCSGKPGM VFSISRGIYS CIHGVAIEER QSVMNSPTAT MNNTHSNILR bmy_01971T0/1-831 MGVCSGKPGM VFSISRGIYS CIHGVAIEER QSVMNSPTAT MNNTHSNILR ENSTTRP00000016230/1-1479 MGVCSGKPGM VFSISRGIYS CIHGVAIEER QSVMNSPTAT MNNTHSNILR 901 950 BACU016980/1-268 LLRAH----- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 LLRTAKNMAN LSGVNGSPQS ALDFIRRESS VYDISEHRRS FTHSDCKSYN bmy_01971T0/1-831 LLRTAKNMAN LSGVNGSPQS ALDFIRRESS VYDISEHRRS FTHSDCKSYN ENSTTRP00000016230/1-1479 LLRTAKNMAN LSGVNGSPQS ALDFIRRESS VYDISEHRRS FTHSDCKSYN 951 1000 BACU016980/1-268 ---CQEN--- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 NPPCEENLFS DYISEVERTF GNLQLKDSNV YQDHYHHHHR PHSIGSASSI bmy_01971T0/1-831 NPPCEENLFS DYISEVERTF GNLQLKDSNA YQD---PHHR PHSIGSASSI ENSTTRP00000016230/1-1479 NPPCEENLFS DYISEVERTF GNLQLKDSNA YQD---PHHR PHSIGSTSSI 1001 1050 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 DGLYDCDNPP FTTQPRALGK KPLDIGLPSS KHSQLGDLYG KFSFKSDRYG bmy_01971T0/1-831 DGLYDCDNPP FTTQPRSLGK KPLDIGLPSA KHSQLSDLYG KFSFKSDRYG ENSTTRP00000016230/1-1479 DGLYDCDNPP FTTQPRSLGK KPLDIGLPSS KHSQLSDLYG KFSFKSDRYG 1051 1100 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 GHDDLIRSDV SDISTHTVTY GNIEGNAAKR RKQQYKDSLK KRPASAKSRR bmy_01971T0/1-831 GHDDLIRSDV SDISTHTVTY GNIEGNAAKR RKQQYKDSLK KRPASAKSRR ENSTTRP00000016230/1-1479 GHDDLIRSDV SDISTHTVTY GNIEGNAAKR RKQQYKDSLK KRPASAKSRR 1101 1150 BACU016980/1-268 ---------R KRPPL----- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 EFDEIELAYR RRPPRSPDHK RYFRDKDGLR DFYLDQFRAK ETSPHWEHVD bmy_01971T0/1-831 EFDEIELAYR RRPPRSPDHK RYFRDKEGLR DFYLDQFRAK ETSPHWEHVD ENSTTRP00000016230/1-1479 EFDEIELAYR RRPPRSPDHK RYFRDKEGLR DFYLDQFRTK ETSPHWEHVD 1151 1200 BACU016980/1-268 ---------- ---------- --------HL ---------- ---------- ENSBTAP00000000263/1-1497 LTDLYKERGE DFKRDSVGGG GPCTNRAHHL KHGTGDKHGG GVVGGVPAPW bmy_01971T0/1-831 LTDIYKERGE DFKRDSVGGG GPCTNRA-HL KHGPGDKHGG --VGGVPAPW ENSTTRP00000016230/1-1479 LTDIYKERGE DFKRDSVGGG GPCTNRS-HL THGPADKHGG --VGGVPAPW 1201 1250 BACU016980/1-268 ---------- ---------- ---------- ---------- --------LK ENSBTAP00000000263/1-1497 EKNLTNVDWE ERPGGNFCRS CPSKLHNYST TTAATAVVAG QNSGRPACIR bmy_01971T0/1-831 EKSLASVDWD ERSGGNFCRS CPSKLHNYST T------VAG QNSGRQACIR ENSTTRP00000016230/1-1479 EKNLTSVDWE ERSGGNFCRS CPSKLHNYSS A------VPG QNSGRLACIR 1251 1300 BACU016980/1-268 C--------- ---------- ---------- ---------- -SSPKRNK-- ENSBTAP00000000263/1-1497 CEACKKAGNL YDISEDNSLQ ELDQPAAPVA AVTSA-ASKY PQSPTNSKAQ bmy_01971T0/1-831 CEACKKAGNL YDISEDNSLQ ELDQPAAPVA VTSSASAAKY PQSPTNSKAQ ENSTTRP00000016230/1-1479 C-ACKKAGKL YDISEDSSLQ ELEQPAAPVA VPSSAPAAKY PQSPTNSKAQ 1301 1350 BACU016980/1-268 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 KKPRNKLRRQ HSYDTFVDLQ KEEAALAPRS VSLKDKGRFL DGSPYAHMFE bmy_01971T0/1-831 KKTRNKLRRQ HSYDTFVDLQ KEEAALAPRS VSLKDKGRFL DGSPYAHMFE ENSTTRP00000016230/1-1479 KKTRNKLRRQ HSYDTFVDLQ KEEAALAPRS VSLKDKGRFL DGSPYAHMFE 1351 1400 BACU016980/1-268 ---------- --DGAA---- ---------- ---------- ---------- ENSBTAP00000000263/1-1497 MPAGESAFSG SNDGKAAAPA AGHHHHGNP- ---------- -GGGGGYMLS bmy_01971T0/1-831 MPAGESAFG- --NGKVAAPA AGHHHHGNHG NHGNPGGGGS GGGGGSYMLS ENSTTRP00000016230/1-1479 MPAGESAFG- --NGKAAAPA AGHHHHGNH- ---------- ---GGSYMLS 1401 1450 BACU016980/1-268 ---------- -QIIRTF--- ---------- ---------- ----PQYR-- ENSBTAP00000000263/1-1497 KSLYPDRVTQ NPFIPTFGDD QCLLHGSKSY FFRQPTVAGA PKARPDFRAL bmy_01971T0/1-831 KSLYPDRVTQ NPFIPTFGDD QCLLHGSKSY FFRQPTVAGV PKARPDFRAL ENSTTRP00000016230/1-1479 KSLYPDRVTQ NPFIPTFGDD QCLLHGSKSY FFRQPTVAGV PKARPDFRAL 1451 1500 BACU016980/1-268 ---------- -----GRAER ECTF-----P QFP------- ---------- ENSBTAP00000000263/1-1497 VSNKPVVSAL HGAVPGRFQK DICIGNQSNP CVPNNKNPRA FNGSSNGHVY bmy_01971T0/1-831 VTNKPVVSAL HGAVPGRFQK DICIGNQSNP CVPNNKNPRA FNGSSNGHVY ENSTTRP00000016230/1-1479 VTNKPVVSAL HGAVPGRFQK DICIGNQSNP CVPNNKNPRA FNGSSNGHVY 1501 1550 BACU016980/1-268 ------KYTV ENSBTAP00000000263/1-1497 EKLSSIESDV bmy_01971T0/1-831 EKLSSIESDV ENSTTRP00000016230/1-1479 EKLSSIESDV