KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:54 2014 Check: 00 .. Name: ENSTTRP00000004031/1-575 Len: 804 Check: 6770 Weight: 1.00 Name: bmy_02923T0/1-518 Len: 804 Check: 5882 Weight: 1.00 Name: ENSBTAP00000000301/1-699 Len: 804 Check: 3791 Weight: 1.00 Name: ENSP00000360922/1-577 Len: 804 Check: 410 Weight: 1.00 Name: BACU011344/1-667 Len: 804 Check: 7805 Weight: 1.00 // 1 50 ENSTTRP00000004031/1-575 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000301/1-699 LKVTMSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STASSLPSEN ENSP00000360922/1-577 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN BACU011344/1-667 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN 51 100 ENSTTRP00000004031/1-575 AGRPIQNSAL PSASITSTSA AA-------- ---------- ---------- bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000301/1-699 AGRPIQNSAL PSASLTSTSA AAVPSNMAHP KEKTLVCLVN ELARFNKIQP ENSP00000360922/1-577 AGRPIQNSAL PSASITSTSA AA-------- ---------- ---------- BACU011344/1-667 AGRPIQNSAL PSASITSTSA AAVPSNMAHP KEKTPVCLVT ELARFNKIQP 101 150 ENSTTRP00000004031/1-575 ---------- ---------- ---------- ---------- ---------- bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000301/1-699 EYKLLREQGP AHCKVFTVQL TLGDQHWEAE GTSIKKAQHT AAAKALEGAK ENSP00000360922/1-577 ---------- ---------- ---------- ---------- ---------- BACU011344/1-667 ECKLLREQGP AHCKVFTVQL TLGDQHWEAE GTSIKKAQHT AAAKALEGTK 151 200 ENSTTRP00000004031/1-575 ---------- ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02923T0/1-518 ---------- ---------- -----MSVCH ---------- ---------- ENSBTAP00000000301/1-699 FPKPIVRPFR SEGRNPESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST ENSP00000360922/1-577 ---------- ------ESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST BACU011344/1-667 FPKPIVRPFR SEGRNPESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST 201 250 ENSTTRP00000004031/1-575 XXXXXXXXXX XXXYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000301/1-699 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA ENSP00000360922/1-577 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA BACU011344/1-667 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA 251 300 ENSTTRP00000004031/1-575 AAKALRTLQN EPPPERLEXN GRGSEEENVY ECEVSQVFE- ALKRNLPVN- bmy_02923T0/1-518 ---------- ---------- ---------- ---------- AFTQSFPLK- ENSBTAP00000000301/1-699 AAKALRILQS EPPSERLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF ENSP00000360922/1-577 AAKALRILQN EPLPERLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF BACU011344/1-667 AAKALRTLQN EPPPDRLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF 301 350 ENSTTRP00000004031/1-575 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL bmy_02923T0/1-518 QVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL ENSBTAP00000000301/1-699 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL ENSP00000360922/1-577 EVARESGPPH MKNFVTKVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL BACU011344/1-667 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL 351 400 ENSTTRP00000004031/1-575 PPLPTVERVK PRIKKKTKCI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE bmy_02923T0/1-518 PPLPTVERVK PRIKKKTKSI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE ENSBTAP00000000301/1-699 PPLPTVERVK PRIKKKTKSI VRLQGGPECG QGMNPISRLA QIQQAKKEKE ENSP00000360922/1-577 PPLPAVERVK PRIKKKTKPI VKPQTSPEYG QGINPISRLA QIQQAKKEKE BACU011344/1-667 PPLPTVERVK PRIKKKTKSI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE 401 450 ENSTTRP00000004031/1-575 PEYLLLTERG LPRRREFVMQ XXXXXHTAEG SGTNKKVAKR NAAENMLEIL bmy_02923T0/1-518 PEYLLLTERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL ENSBTAP00000000301/1-699 PEYLLLAERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL ENSP00000360922/1-577 PEYTLLTERG LPRRREFVMQ VKVGNHTAEG TGTNKKVAKR NAAENMLEIL BACU011344/1-667 PEYLLLTERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL 451 500 ENSTTRP00000004031/1-575 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSHKEDE bmy_02923T0/1-518 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE ENSBTAP00000000301/1-699 GFKVPQAQPS KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE ENSP00000360922/1-577 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE BACU011344/1-667 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE 501 550 ENSTTRP00000004031/1-575 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFSRV APNPAKATVT bmy_02923T0/1-518 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFTRV APNPAKATVT ENSBTAP00000000301/1-699 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTKDFARV APNPAKATVT ENSP00000360922/1-577 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTKDFTRA APNPAKATVT BACU011344/1-667 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFTRV APNPAKATVT 551 600 ENSTTRP00000004031/1-575 AMIARELLYG GTSPTAETVL KNNISSGHAP HGPLTRPSEQ LDYLSRVQGF bmy_02923T0/1-518 AMIARELLYG GTSPTAETVL KNNISSGHAP HGPLTRPSEQ LDYLSRVQGL ENSBTAP00000000301/1-699 AMIARELLYG GTSPTAETIL KSNISSGHAP HGPLTRPSEQ LDYLCTVQGF ENSP00000360922/1-577 AMIARELLYG GTSPTAETIL KNNISSGHVP HGPLTRPSEQ LDYLSRVQGF BACU011344/1-667 AVIARELLYG GTSPTAEAIL KNDISSGHVP HGPLTRPSEQ LDYLSRVQGF 601 650 ENSTTRP00000004031/1-575 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL bmy_02923T0/1-518 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL ENSBTAP00000000301/1-699 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL ENSP00000360922/1-577 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL BACU011344/1-667 QVEYKDFPRN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL 651 700 ENSTTRP00000004031/1-575 LSELDQQNTE MPRTGNGPMS V--------- ---------- ---------- bmy_02923T0/1-518 LSELDQQNTE MPRTGNGPMS VNVCSEVLHM VQMKSTVALR VKYCFDSLFT ENSBTAP00000000301/1-699 LSELDQQNTE MPRTGNGPMS L--------- ---------- ---------- ENSP00000360922/1-577 LSELDQQSTE MPRTGNGPMS V--------- ---------- ---------- BACU011344/1-667 LSELDQQNTE MPRTGNGPMS V--------- ---------- ---------- 701 750 ENSTTRP00000004031/1-575 ---------- ---------- ---------- ---------- ---------- bmy_02923T0/1-518 LEFFLPMELT EAVREDVRAW KHGVGGTAAS EGQVGARVKG GASHLNLTLS ENSBTAP00000000301/1-699 ---------- ---------- ---------- ---------- ---------- ENSP00000360922/1-577 ---------- ---------- ---------- ---------- ---------- BACU011344/1-667 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000004031/1-575 ---------- ---------- ------CGRC ---------- ---------- bmy_02923T0/1-518 PKEMTERRRE ASWSLPSGGL ALGGVKCTCS GATHCKAGQP GARWAQRGSA ENSBTAP00000000301/1-699 ---------- ---------- ------CERR NRKHRPFSDW LTRNTLGQTL ENSP00000360922/1-577 ---------- ---------- ------CGRC ---------- ---------- BACU011344/1-667 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000004031/1-575 ---- bmy_02923T0/1-518 YFPL ENSBTAP00000000301/1-699 DTRA ENSP00000360922/1-577 ---- BACU011344/1-667 ----