KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:10:54 2014 Check: 00 ..
Name: ENSTTRP00000004031/1-575 Len: 804 Check: 6770 Weight: 1.00
Name: bmy_02923T0/1-518 Len: 804 Check: 5882 Weight: 1.00
Name: ENSBTAP00000000301/1-699 Len: 804 Check: 3791 Weight: 1.00
Name: ENSP00000360922/1-577 Len: 804 Check: 410 Weight: 1.00
Name: BACU011344/1-667 Len: 804 Check: 7805 Weight: 1.00
//
1 50
ENSTTRP00000004031/1-575 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN
bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000000301/1-699 LKVTMSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STASSLPSEN
ENSP00000360922/1-577 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN
BACU011344/1-667 ----MSQVQV QVQNPSAALS GSQILNKNQS LLSQPLMSIP STTSSLPSEN
51 100
ENSTTRP00000004031/1-575 AGRPIQNSAL PSASITSTSA AA-------- ---------- ----------
bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000000301/1-699 AGRPIQNSAL PSASLTSTSA AAVPSNMAHP KEKTLVCLVN ELARFNKIQP
ENSP00000360922/1-577 AGRPIQNSAL PSASITSTSA AA-------- ---------- ----------
BACU011344/1-667 AGRPIQNSAL PSASITSTSA AAVPSNMAHP KEKTPVCLVT ELARFNKIQP
101 150
ENSTTRP00000004031/1-575 ---------- ---------- ---------- ---------- ----------
bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000000301/1-699 EYKLLREQGP AHCKVFTVQL TLGDQHWEAE GTSIKKAQHT AAAKALEGAK
ENSP00000360922/1-577 ---------- ---------- ---------- ---------- ----------
BACU011344/1-667 ECKLLREQGP AHCKVFTVQL TLGDQHWEAE GTSIKKAQHT AAAKALEGTK
151 200
ENSTTRP00000004031/1-575 ---------- ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_02923T0/1-518 ---------- ---------- -----MSVCH ---------- ----------
ENSBTAP00000000301/1-699 FPKPIVRPFR SEGRNPESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST
ENSP00000360922/1-577 ---------- ------ESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST
BACU011344/1-667 FPKPIVRPFR SEGRNPESIT PTVELNALCM KLGKKPMYKP VDPYSRMQST
201 250
ENSTTRP00000004031/1-575 XXXXXXXXXX XXXYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA
bmy_02923T0/1-518 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000000301/1-699 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA
ENSP00000360922/1-577 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA
BACU011344/1-667 YNYNMRGGAY PPRYFYPFPV PPLLYQVELS VGGQQFNGKG KTRQAAKHDA
251 300
ENSTTRP00000004031/1-575 AAKALRTLQN EPPPERLEXN GRGSEEENVY ECEVSQVFE- ALKRNLPVN-
bmy_02923T0/1-518 ---------- ---------- ---------- ---------- AFTQSFPLK-
ENSBTAP00000000301/1-699 AAKALRILQS EPPSERLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF
ENSP00000360922/1-577 AAKALRILQN EPLPERLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF
BACU011344/1-667 AAKALRTLQN EPPPDRLEVN GRESEEENLN KSEISQVFEI ALKRNLPVNF
301 350
ENSTTRP00000004031/1-575 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL
bmy_02923T0/1-518 QVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL
ENSBTAP00000000301/1-699 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL
ENSP00000360922/1-577 EVARESGPPH MKNFVTKVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL
BACU011344/1-667 EVARESGPPH MKSFVTRVSV GEFVGEGEGK SKKISKKNAA IAVLEELKKL
351 400
ENSTTRP00000004031/1-575 PPLPTVERVK PRIKKKTKCI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE
bmy_02923T0/1-518 PPLPTVERVK PRIKKKTKSI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE
ENSBTAP00000000301/1-699 PPLPTVERVK PRIKKKTKSI VRLQGGPECG QGMNPISRLA QIQQAKKEKE
ENSP00000360922/1-577 PPLPAVERVK PRIKKKTKPI VKPQTSPEYG QGINPISRLA QIQQAKKEKE
BACU011344/1-667 PPLPTVERVK PRIKKKTKSI VRLQSSPEYG QGMNPISRLA QIQQAKKEKE
401 450
ENSTTRP00000004031/1-575 PEYLLLTERG LPRRREFVMQ XXXXXHTAEG SGTNKKVAKR NAAENMLEIL
bmy_02923T0/1-518 PEYLLLTERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL
ENSBTAP00000000301/1-699 PEYLLLAERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL
ENSP00000360922/1-577 PEYTLLTERG LPRRREFVMQ VKVGNHTAEG TGTNKKVAKR NAAENMLEIL
BACU011344/1-667 PEYLLLTERG LPRRREFVMQ VKVGNHTAEG SGTNKKVAKR NAAENMLEIL
451 500
ENSTTRP00000004031/1-575 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSHKEDE
bmy_02923T0/1-518 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE
ENSBTAP00000000301/1-699 GFKVPQAQPS KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE
ENSP00000360922/1-577 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE
BACU011344/1-667 GFKVPQAQPT KPALKSEEKT PIKKPGDGRK VTFFEPGSGD ENGTSNKEDE
501 550
ENSTTRP00000004031/1-575 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFSRV APNPAKATVT
bmy_02923T0/1-518 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFTRV APNPAKATVT
ENSBTAP00000000301/1-699 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTKDFARV APNPAKATVT
ENSP00000360922/1-577 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTKDFTRA APNPAKATVT
BACU011344/1-667 FRMPYLSHQQ LPAGILPMVP EVAQAVGVSQ GHHTREFTRV APNPAKATVT
551 600
ENSTTRP00000004031/1-575 AMIARELLYG GTSPTAETVL KNNISSGHAP HGPLTRPSEQ LDYLSRVQGF
bmy_02923T0/1-518 AMIARELLYG GTSPTAETVL KNNISSGHAP HGPLTRPSEQ LDYLSRVQGL
ENSBTAP00000000301/1-699 AMIARELLYG GTSPTAETIL KSNISSGHAP HGPLTRPSEQ LDYLCTVQGF
ENSP00000360922/1-577 AMIARELLYG GTSPTAETIL KNNISSGHVP HGPLTRPSEQ LDYLSRVQGF
BACU011344/1-667 AVIARELLYG GTSPTAEAIL KNDISSGHVP HGPLTRPSEQ LDYLSRVQGF
601 650
ENSTTRP00000004031/1-575 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL
bmy_02923T0/1-518 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL
ENSBTAP00000000301/1-699 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL
ENSP00000360922/1-577 QVEYKDFPKN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL
BACU011344/1-667 QVEYKDFPRN NKNEFVSLIN CSSQPPLISH GIGKDVESCH DMAALNILKL
651 700
ENSTTRP00000004031/1-575 LSELDQQNTE MPRTGNGPMS V--------- ---------- ----------
bmy_02923T0/1-518 LSELDQQNTE MPRTGNGPMS VNVCSEVLHM VQMKSTVALR VKYCFDSLFT
ENSBTAP00000000301/1-699 LSELDQQNTE MPRTGNGPMS L--------- ---------- ----------
ENSP00000360922/1-577 LSELDQQSTE MPRTGNGPMS V--------- ---------- ----------
BACU011344/1-667 LSELDQQNTE MPRTGNGPMS V--------- ---------- ----------
701 750
ENSTTRP00000004031/1-575 ---------- ---------- ---------- ---------- ----------
bmy_02923T0/1-518 LEFFLPMELT EAVREDVRAW KHGVGGTAAS EGQVGARVKG GASHLNLTLS
ENSBTAP00000000301/1-699 ---------- ---------- ---------- ---------- ----------
ENSP00000360922/1-577 ---------- ---------- ---------- ---------- ----------
BACU011344/1-667 ---------- ---------- ---------- ---------- ----------
751 800
ENSTTRP00000004031/1-575 ---------- ---------- ------CGRC ---------- ----------
bmy_02923T0/1-518 PKEMTERRRE ASWSLPSGGL ALGGVKCTCS GATHCKAGQP GARWAQRGSA
ENSBTAP00000000301/1-699 ---------- ---------- ------CERR NRKHRPFSDW LTRNTLGQTL
ENSP00000360922/1-577 ---------- ---------- ------CGRC ---------- ----------
BACU011344/1-667 ---------- ---------- ---------- ---------- ----------
801 850
ENSTTRP00000004031/1-575 ----
bmy_02923T0/1-518 YFPL
ENSBTAP00000000301/1-699 DTRA
ENSP00000360922/1-577 ----
BACU011344/1-667 ----