KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:57 2014 Check: 00 .. Name: ENSTTRP00000001092/1-356 Len: 419 Check: 2518 Weight: 1.00 Name: ENSP00000386284/1-330 Len: 419 Check: 5574 Weight: 1.00 Name: bmy_05205T0/1-389 Len: 419 Check: 3584 Weight: 1.00 Name: BACU007321/1-300 Len: 419 Check: 2571 Weight: 1.00 Name: ENSBTAP00000000315/1-329 Len: 419 Check: 3829 Weight: 1.00 // 1 50 ENSTTRP00000001092/1-356 VPPASSTPSL SRPGLGQAGE PDTGSHLPPT ISTSIFLPSF PTISPSHPLT ENSP00000386284/1-330 MQPQS----- ---------- ---------V LHSGYFHPLL RAWQ-----T bmy_05205T0/1-389 MQPQS----- ---------- ---------V LHSGYFHPLL RTWQ-----A BACU007321/1-300 MQPQS----- ---------- ---------V LHSGYFHPLL RTWQ-----A ENSBTAP00000000315/1-329 MHPQS----- ---------- ---------V LHSGYFHPLL RNWQ-----T 51 100 ENSTTRP00000001092/1-356 TGPSHSYQSI AHPRSCR--- ---------- ---------D VPDD------ ENSP00000386284/1-330 ATTTLNASNL IYPIFVT--- ---------- ---------D VPDD------ bmy_05205T0/1-389 TTASLSASSL IYPIFVTPWA WPGRGTRHWI PSSSHHLHLH IPSEFPNHPS BACU007321/1-300 TTASLSASSL IYPIFVT--- ---------- ---------D VPDD------ ENSBTAP00000000315/1-329 AATSLSASNL IYPIFVT--- ---------- ---------D VPDD------ 101 150 ENSTTRP00000001092/1-356 ---------- ----KQPIAS LPGV------ ---------- --ARYGVNRL ENSP00000386284/1-330 ---------- ----IQPITS LPGV------ ---------- --ARYGVKRL bmy_05205T0/1-389 QSPPHHWPFP QLPIHSPSPA LAGMFLMTNS LSPASQEWPA PPCRYGVNRL BACU007321/1-300 ---------- ----KQPIAS LPGV------ ---------- --ARYGVNRL ENSBTAP00000000315/1-329 ---------- ----KQPIAS LPGV------ ---------- --ARYGVNRL 151 200 ENSTTRP00000001092/1-356 EEMLKPLVEE GLRCVLVFGV PSRVPKDERG SAADSEDSPT IEAIRLLRKN ENSP00000386284/1-330 EEMLRPLVEE GLRCVLIFGV PSRVPKDERG SAADSEESPA IEAIHLLRKT bmy_05205T0/1-389 EEMLKPLVEE GLRCVLVFGV PSRVPKDERG SAADSEDSPA IEAIRLLRKN BACU007321/1-300 EEMLKPLVEE GLRCVLVFGV PSRVPKDERG SAADSEDSPA IEAIRLLRKN ENSBTAP00000000315/1-329 EEMLKPLVEE GLRCVLIFGV PSRVPKDERG SAADSEDSPA IEAIRLLRKN 201 250 ENSTTRP00000001092/1-356 FPSLLVACDV CLCPYTSHGH CGLLSENGSF QAEESRQRLA EVALAYAKAG ENSP00000386284/1-330 FPNLLVACDV CLCPYTSHGH CGLLSENGAF RAEESRQRLA EVALAYAKAG bmy_05205T0/1-389 FPGLLVACDV CLCPYTSHGH CGLLSENGSF QAEESRQRLA EVALAYAKAG BACU007321/1-300 FPGLLVACDV CLCPYTSHGH CGLLSENGSF QAEESRQRLA EVALAYAKAG ENSBTAP00000000315/1-329 FPSLLVACDV CLCPYTSHGH CGLLSENGSF QAEESRQRLA EVALAYAKAG 251 300 ENSTTRP00000001092/1-356 CQVVAPSDMM DGRVEAIKEA LMAHGFG--V SVMSYSAKFA SCFYGPFRDA ENSP00000386284/1-330 CQVVAPSDMM DGRVEAIKEA LMAHGLGNRV SVMSYSAKFA SCFYGPFRDA bmy_05205T0/1-389 CQVVAPSDMM DGRVEAIKEA LMAHGFGNRV SVMSYSAKFA SCFYGPFRDA BACU007321/1-300 CQVVAPSDMM DGRVEAIKEA LMAHGFGNRV SVMSYSAKFA SCFYGPFRDA ENSBTAP00000000315/1-329 CQVVAPSDMM DGRVEAIKEA LMAHGFGNRV SVMSYSAKFA SCFYGPFRDA 301 350 ENSTTRP00000001092/1-356 AQSSPAFGDR RCYQLPPGAR GLALRAVDRD VREGADMLMV KPGMPYLDIV ENSP00000386284/1-330 AKSSPAFGDR RCYQLPPGAR GLALRAVDRD VREGADMLMV KPGMPYLDIV bmy_05205T0/1-389 AQSSPAFGDR RCYQLPPGAR GLALRAVDRD VREGADVLMV KPGMPYLDIV BACU007321/1-300 AQSSPAFGDR RCYQLPPGAR GLALRAV--- ---------- ---------- ENSBTAP00000000315/1-329 AQSSPAFGDR RCYQLPPGAR GLALRAVDRD VREGADLLMV KPGTPYLDIV 351 400 ENSTTRP00000001092/1-356 REVKNKHPEL PLAVYHVSGE FAMLWHGAQA GAFDLKAAVL EVMTAFRRAG ENSP00000386284/1-330 REVKDKHPDL PLAVYHVSGE FAMLWHGAQA GAFDLKAAVL EAMTAFRRAG bmy_05205T0/1-389 REVKNKHPEL PLAVYHVSGE FAMLWHGAQA GAFDLKAAVL EVMTAFRRAG BACU007321/1-300 ------HPEL PLAVYHVSGE FAMLWHGAQA GAFDLKAAVL EVMTAFRRAG ENSBTAP00000000315/1-329 REVKNKHPEL PLAVYHVSGE FAMLWHGAQA GAFDLKAAVL EVMTAFRRAG 401 450 ENSTTRP00000001092/1-356 ADVIITYYTP QLLQWLKE- ENSP00000386284/1-330 ADIIITYYTP QLLQWLKEE bmy_05205T0/1-389 ADVIITYYTP QLLQWLKE- BACU007321/1-300 ADIIITYYTP QLLQWLKE- ENSBTAP00000000315/1-329 ADVIITYYTP QLLQWLKE-