KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:57 2014 Check: 00 .. Name: ENSP00000358755/1-476 Len: 506 Check: 8765 Weight: 1.00 Name: ENSBTAP00000000324/1-472 Len: 506 Check: 7161 Weight: 1.00 Name: bmy_20996T0/1-443 Len: 506 Check: 9956 Weight: 1.00 Name: BACU002713/1-474 Len: 506 Check: 8894 Weight: 1.00 Name: ENSTTRP00000007407/1-471 Len: 506 Check: 3476 Weight: 1.00 // 1 50 ENSP00000358755/1-476 ----MTKLIL LTGLVLILNL QLGSAYQLTC YFTNWAQYRP GLGRFMPDNI ENSBTAP00000000324/1-472 ----MAKLIF LTGLAFLLNA QLGSAYQLVC YFSNWAQYRP GLGSFKPDNI bmy_20996T0/1-443 MKSSNYCMTH GNGKVLMQDS HLGDG----- ---------- ---------- BACU002713/1-474 ----MAKLIL LTGLALLLNA QLGSAYQLIC YFTNWSQYRP GLGRFKPDDI ENSTTRP00000007407/1-471 ----MAKLI- LTGLALLLNA QLGSAYQLMC YFTNWSQYRP GLGSFKPDDI 51 100 ENSP00000358755/1-476 DPCLCTHLIY AFAGRQNNEI TTIEWNDVTL YQAFNGLKNK NSQLKTLLAI ENSBTAP00000000324/1-472 DPCLCTHLIY AFAGMSNSEI TTIEWNDVAL YSSFNDLKKK NSQLKILLAI bmy_20996T0/1-443 ---------- ---------- ---------- --------PR NSQLKTLLAI BACU002713/1-474 DPCLCTHLIY AFAGMRNNEI TTIEWNDVTL YQSFNSLKNK NSQLKTLLAI ENSTTRP00000007407/1-471 DPCLCTHLIY AFAGMRNNEI TTIEWNDVTL YQSFNSLKNK NSQLKTLLAI 101 150 ENSP00000358755/1-476 GGWNFGTAPF TAMVSTPENR QTFITSVIKF LRQYEFDGLD FDWEYPGSRG ENSBTAP00000000324/1-472 GGWNFGTAPF TAMVATPENR KTFISSVIKF LHQYGFDGLD FDWEYPGSRG bmy_20996T0/1-443 GGWNFGTAPF TAMVSTPENR KTFISSVIRF LRQYGFDGLD LDWEYPGSRG BACU002713/1-474 GGWNFGTAPF TTMVSTPVNR KTFISSVIRF LRQYGFDGLD FDWEYPGSRG ENSTTRP00000007407/1-471 GGWNFGTAPF TAMVSTPENR KTFISSVIKF LRQYGFDGLD FDWEYPGSRG 151 200 ENSP00000358755/1-476 SPPQDKHLFT VLVQ------ ---------- ---------- EMREAFEQEA ENSBTAP00000000324/1-472 SPSQDKHLFT VLVQ------ ---------- ---------- ETREAFEQEA bmy_20996T0/1-443 SPSQDKHLFT VLVQVRREVA VFSPRKFKAC SFQGEPGGSR EMREAFEQEA BACU002713/1-474 SPPQDKHLFT VLVQ------ ---------- ---------- EMREAFEQEA ENSTTRP00000007407/1-471 SPSQDKHLFT VLVQ------ ---------- ---------- EMREAFEQEA 201 250 ENSP00000358755/1-476 KQINKPRLMV TAAVAAGISN IQSGYEIPQL SQYLDYIHVM TYDLHGSWEG ENSBTAP00000000324/1-472 KQTNKPRLLV TAAVAAGISN IQAGYEIPQL SQYLDFIHVM TYDFHGSWEG bmy_20996T0/1-443 IQTNKPRLLV TAAVAAGIFN IQSGYEIPQL SQYLDYIHVM TYDLHGSWDG BACU002713/1-474 IQTNKPRLLV TAAVAAGIFN IQSGYEIPQL SQYLDYIHVM TYDLHGSWDG ENSTTRP00000007407/1-471 IQTNKPRLLV TAAVAAGISN IQSGYEIPQL SQYLDYIHVM TYDFYGPWEG 251 300 ENSP00000358755/1-476 YTGENSPLYK YPTDTGSNAY LNVDYVMNYW KDNGAPAEKL IVGFPTYGHN ENSBTAP00000000324/1-472 YTGENSPLYK YPTDTGSNTY LNVEYAMNYW KKNGAPAEKL IIGFPAYGHN bmy_20996T0/1-443 YTGENSPLYK YPTDTGNNAY LNVDYAMNYW KKNGAPAEKL IVGFPTYGHN BACU002713/1-474 YTGENSPLYK YPTETGNNAY LNVDYAMNYW KNNGAPAEKL IVGFPTYGHN ENSTTRP00000007407/1-471 YTGENSPLYK YPTDTGNNAY LNVDYAMNYW KNNGAPAEKL IVGFPAYGHD 301 350 ENSP00000358755/1-476 FILSNPSNTG IGAPTSGAGP AGPYAKESGI WAYYEICTFL KNGATQGWDA ENSBTAP00000000324/1-472 FVLRDASNNG IGAPTSGAGP AGPYTREAGF WAYYEICAFL KDGATEAWDD bmy_20996T0/1-443 YILSNPSNNG IGAPTSGPGP AGPYTRQAGF LAYYEICTFL KDGATQAWDA BACU002713/1-474 YILSNPSNNG IGAPTSGPGP AGPYTRQAGF LAYYEICTFL KNGATQAWDA ENSTTRP00000007407/1-471 YILSNPSNNG IGAPTSGAGP AGPYTRQAGF LAYYEICTFL KDGATQAWDA 351 400 ENSP00000358755/1-476 PQEVPYAYQG NVWVGYDNIK SFDIKAQWLK HNKFGGAMVW AIDLDDFTGT ENSBTAP00000000324/1-472 SQNVPYAYKG TEWVGYDNVN SFRIKAQWLK ENNFGGAMVW AIDLDDFTGT bmy_20996T0/1-443 PQYVPYAYKG NEWVGYDNVK SFNIKAEWLK QNNFGGAMIW AIDMDDFTGT BACU002713/1-474 PQYVPYAYKG NEWVGYDNVK SFNIKAEWLK QNNFGGAMIW AIDMDDFTGT ENSTTRP00000007407/1-471 SQYVPYTYEG NKWVGYDNVK SFNIKAEWLK QNNFGGAMVW AIDMDDFTGT 401 450 ENSP00000358755/1-476 FCNQGKFPLI STLKKALGLQ SASCTAPAQP IEPITAAPSG SGNGSGSSSS ENSBTAP00000000324/1-472 FCNQGKFPLI NTLKDALGLK SATCNASTQS SEPNSSPGNE SGSGNK--SS bmy_20996T0/1-443 FCNQGKFPLT NTLKDVLGLK SASCIASTQP SEPNSSTGSG SGSGSGSSSS BACU002713/1-474 FCNQGKFPLT NTLKDVLGLK SASCTASTQP SEPNSSTESA SGSGSS--TS ENSTTRP00000007407/1-471 FCNQGKFPLI NTLKDVLGLK SASCTTSTQS SEPNSRTGSG SGSGSG--SS 451 500 ENSP00000358755/1-476 GGSSGGSGFC AVRANGLYPV ANNRNAFWHC VNGVTYQQNC QAGLVFDTSC ENSBTAP00000000324/1-472 --SSEGRGYC AGKADGLYPV ADNRNAFWNC VNGITYKQNC LTGLVFDTSC bmy_20996T0/1-443 GGSSVGSGYC ADKANGLYPV PNNRNAFVNC ANGITYEQYC LAGLVFDTSC BACU002713/1-474 GGSSVGSGYC AGKADGLYPV PNNRNAYINC ANGITYEQYC LAGLVFDTSC ENSTTRP00000007407/1-471 --SSVGSGYC AGKANGLYPV ANNRNAFVNC ANGITYEQYC PAGLVFDTSC 501 550 ENSP00000358755/1-476 DCCNWA ENSBTAP00000000324/1-472 HCCNWA bmy_20996T0/1-443 QCCNLP BACU002713/1-474 QCCNRP ENSTTRP00000007407/1-471 QCCKLA