KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:00 2014 Check: 00 .. Name: ENSP00000412209/1-420 Len: 551 Check: 9012 Weight: 1.00 Name: BACU015134/1-354 Len: 551 Check: 231 Weight: 1.00 Name: ENSBTAP00000000339/1-423 Len: 551 Check: 4833 Weight: 1.00 Name: bmy_16203T0/1-403 Len: 551 Check: 619 Weight: 1.00 Name: ENSTTRP00000007357/1-420 Len: 551 Check: 5535 Weight: 1.00 // 1 50 ENSP00000412209/1-420 ---------- ---------- ---------- ---------- ---------- BACU015134/1-354 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000339/1-423 ---------- ---------- ---------- ---------- ---------- bmy_16203T0/1-403 MGSRSRAWAG PGQALPGPPT SRREAASWSA VPQLLPGLRS QSLLPGGPEG ENSTTRP00000007357/1-420 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000412209/1-420 ----MIIVAH VLLILLGATE ILQADLLPDE KISLLPPVNF TIKVTGLAQV BACU015134/1-354 -------MAP ASLILLAATV ILQVDLLPDK K--------- ---------- ENSBTAP00000000339/1-423 ----VIIMAP ELLILLGAAV ILQADLLPDK KFLLLPPVNF TIKAVNLAQV bmy_16203T0/1-403 PGADVIIMAP ASLILLGATV ILQVDLLPDK KFLLLPPVNF TIKAINLAQV ENSTTRP00000007357/1-420 ----VIIMAP ASLILLGATV ILQVDLLPDK KFLLLPPVNF TIKAINLAQV 101 150 ENSP00000412209/1-420 LLQWKPNPDQ EQRNVNLEYQ VKINAPKEDD YETRITESKC VTILHKGFSA BACU015134/1-354 ---WSP---- ---------- ---------- ---------- ---------- ENSBTAP00000000339/1-423 LLRWEPNPDQ EQSNIQLGYH VKINAPQEED YETRNTERNL ITILHKGFSA bmy_16203T0/1-403 LLRWEPNTDQ EQRNVQLGYH VKINAPQEED YETRNTESRR ITILHKGFSA ENSTTRP00000007357/1-420 LLRWEPNTDQ EQRNVQLGYH VKINAPQEED YETRNTESRR ITILHKGFSA 151 200 ENSP00000412209/1-420 SVRTILQNDH SLLASSWASA ELHAP----- PGSPGTSIVN LTCTTNTTED BACU015134/1-354 ---------- ---------- ---------- ----GTSIVN LTCTTNTKAN ENSBTAP00000000339/1-423 SVRTVPWNDH SLQASSWVSA ELKAPIVFDH LGSPGTEIVN LTCTTNTKAD bmy_16203T0/1-403 SVQTVPWNDR SLQPSSWVSA ELKAP----- P--------- ---------- ENSTTRP00000007357/1-420 SVQTVPWNDR SLQPSSWVSA ELRAP----- PGSPGTSIVN LTCTTNTKAN 201 250 ENSP00000412209/1-420 NYSRLRSYQV SLHCTWLVGT DAPEDTQYFL YYRYGSWTEE CQEYSKDTLG BACU015134/1-354 NYTHLRPYQV SLHCTWLVGK GAPEDTQYFL YYRYGSWTEE CQEYSKDTLQ ENSBTAP00000000339/1-423 NYTHLRPYQV SLHCTWLVGK DAPDDTQYFL YYRYRSWIEE CQEYSKDVLQ bmy_16203T0/1-403 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007357/1-420 NYTHLRPYQV SLHCTWLVGK DAPEDTQYFL YYRYGSWTEE CQEYSKDTLQ 251 300 ENSP00000412209/1-420 RNIACWFPRT FILSKGRDWL AVLVNGSSKH SAIRPFDQLF ALHAIDQINP BACU015134/1-354 RNIACWFPRT FINSKGRDSL AVYVNGSSEE AAIKPFDELF ALHAIDRVNP ENSBTAP00000000339/1-423 RNVACWFPRT FINSKGRDYL AVYVNGSSKG AAIKPFDQLF ALHAIDRVNS bmy_16203T0/1-403 ---------- ---------- ---------- ---------- -----DRVNP ENSTTRP00000007357/1-420 RNIACWFPRT FINSKGRDSL AVYVNGSSEE AVIKPFDELF ALHAIDRVNP 301 350 ENSP00000412209/1-420 PLNVTAEIEG TRLSIQWEKP VSAFPIHCFD YEVKIHNTRN GYLQIEKLMT BACU015134/1-354 PAKVTAEIEG TCLSIQWEKP VSAFPVHCFD YEVKIYNTRK GYFQTEKMTT ENSBTAP00000000339/1-423 PANVTAEIKG TCLSIHWEKP VSAFPSHCFD YEVKIYNAKK GYFQTEKMTT bmy_16203T0/1-403 PAKVTAEIEG TCLSIQWEKP VSAFPVHCFD YEVKIYNTRK GYFQTEKMTT ENSTTRP00000007357/1-420 PAKVTAEIEG TCLSIQWEKP VSAFPVHCFD YEVKIYNTRK GYFQTEKMTT 351 400 ENSP00000412209/1-420 NAFISIIDDL SKYDVQVRAA VSSMCREAGL WSEWSQPIYV GNDEHKPLRE BACU015134/1-354 NTFISIIDGI SEYSIQVRAA VSSACRAGGP SSEWSQPIYV ATSRGPQLTP ENSBTAP00000000339/1-423 NTLITIIDDV SKYYIQVRAA VSPVCRATGL WSEWSRPIYV GKDDQKPWTE bmy_16203T0/1-403 NTFISIIDGI SEYSIQVRAA VSSACRAGGP SSEWSQPIYV GEYLVFILKQ ENSTTRP00000007357/1-420 NTFISVIDGI SEYSIQVRAA VSSVCRAVGP SSEWSQPIYV GNNEQKPWTK 401 450 ENSP00000412209/1-420 WFVIVIMATI ---------- ---------- ------CFIL LI---LSLIC BACU015134/1-354 SALLCDSSPI ---------- ---------- ------HQTR TAAPTLKHCC ENSBTAP00000000339/1-423 WFLIAVMMTI ---------- ---------- ------CFIL LI---FSLIC bmy_16203T0/1-403 VILLVVITDP PGKCTPSLAV SEPDRELGRD KDSGEDAMEL KDEAVLNKLC ENSTTRP00000007357/1-420 WFLIAVMATV ---------- ---------- ------CFIL LI---FSLIC 451 500 ENSP00000412209/1-420 KI-------- --------CH LWIKLFPPIP APKSNIKDLF VTTNYEKAGS BACU015134/1-354 ENSS------ ----EIERCH LWTKLFPPVP APKSNIKEFF VTINYEVIDM ENSBTAP00000000339/1-423 RI-------- --------CH VWTKLFPPVP GPKSNINDFF VIINNEKTGS bmy_16203T0/1-403 KVQRIDHSGK YHRVKAERCH LWTKLFPPVP APKSNIKEFF VTINYEVIDM ENSTTRP00000007357/1-420 RI-------- --------CH LWTKVFPPVP APKSNIKEFF VTINYEKTGS 501 550 ENSP00000412209/1-420 SETEIEVICY IEKPGVETLE DSVF------ ---------- ---------- BACU015134/1-354 NVNAVQ---- NEKRRTELTV NCLHVEQEHI SHFPPKYSHS LSTLLSALSL ENSBTAP00000000339/1-423 SETEV--ISY AEEAGFETLE DSVF------ ---------- ---------- bmy_16203T0/1-403 NVNALQ---- NEKRRTELTV NCLHVE---- ---------- ---------- ENSTTRP00000007357/1-420 SETQIEVISY AEEAGSETLE DSVF------ ---------- ---------- 551 600 ENSP00000412209/1-420 - BACU015134/1-354 S ENSBTAP00000000339/1-423 - bmy_16203T0/1-403 - ENSTTRP00000007357/1-420 -