KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:01 2014 Check: 00 .. Name: BACU019107/1-198 Len: 270 Check: 9166 Weight: 1.00 Name: bmy_16666T0/1-270 Len: 270 Check: 1342 Weight: 1.00 Name: ENSP00000223369/1-198 Len: 270 Check: 9037 Weight: 1.00 Name: ENSTTRP00000005723/1-198 Len: 270 Check: 8689 Weight: 1.00 Name: ENSBTAP00000000341/1-198 Len: 270 Check: 8569 Weight: 1.00 // 1 50 BACU019107/1-198 MKLYSLSVLY KGYAKAVLLK AAYDVSSFSF FQRPSVQEFM ASTSQLIVEC bmy_16666T0/1-270 MRLYSLSVLY KGDAKAVLLK AAYDVSSFSF FQRSSVQEFM TFTSQLIVER ENSP00000223369/1-198 MKLYSLSVLY KGEAKVVLLK AAYDVSSFSF FQRSSVQEFM TFTSQLIVER ENSTTRP00000005723/1-198 MRLYSLSVLY KGDAKAVLLK AAYDVSSFSF FQRSSVQEFM TFTSQLIVER ENSBTAP00000000341/1-198 MKLYSLSVLY KGESKTVLLK AAYDVSSFSF FQRSSVQEFM TFTSQLIVER 51 100 BACU019107/1-198 SLKGSKASTK EQEYLCHVYM TNDSLVGVVI ADSEYSSRVV FTLLEKVLDE bmy_16666T0/1-270 SSKGSRASVK EQEYLCHVYV RNDSLAGVVI ADNEYPSRVA FTLLEKVLDE ENSP00000223369/1-198 SSKGTRASVK EQDYLCHVYV RNDSLAGVVI ADNEYPSRVA FTLLEKVLDE ENSTTRP00000005723/1-198 SSKGSRASVK EQEYLCHVYV RNDSLAGVVI ADSEYPSRVA FTLLEKVLDE ENSBTAP00000000341/1-198 SAKGSRASVK EQEYLCHVYV RNDSLAGVVI ADSEYPSRVA FTLLEKVLDE 101 150 BACU019107/1-198 FSKQVDRIDW PVGSPGTSQY AGLDGHLSRY QNPREGHPTT KVQAELDETK bmy_16666T0/1-270 FSRQVDRIDW PVGSPDTIQY AGLDGHLSRY QNPREADPMT KVQAELDETK ENSP00000223369/1-198 FSKQVDRIDW PVGSPATIHY PALDGHLSRY QNPREADPMT KVQAELDETK ENSTTRP00000005723/1-198 FSKQVDRIDW PVGSPDTIQY AGLDGHLSRY QNPREADPMT KVQAELDETK ENSBTAP00000000341/1-198 FSKQVDRIDW PTGSPDTIRY SGLDSQLSRY QNPREADPMT KVQAELDETK 151 200 BACU019107/1-198 IILQNTTESL LERGGKLDDL VSKSEALGIQ FKAFYKTARK QNSC------ bmy_16666T0/1-270 IILHNTMESL LERGEKLDDL VSKSEVLGTQ PGSKTRAVRS CDSSQQRPLR ENSP00000223369/1-198 IILHNTMESL LERGEKLDDL VSKSEVLGTQ SKAFYKTARK QNSC------ ENSTTRP00000005723/1-198 IILHNTMESL LERGEKLDDL VSKSEVLGIQ SKAFYKTARK QNSC------ ENSBTAP00000000341/1-198 IILHNTMESL LERGEKLDDL VSKSEVLGIQ SKAFYKTARK QNSC------ 201 250 BACU019107/1-198 --CAIM---- ---------- ---------- ---------- ---------- bmy_16666T0/1-270 WNATVTHIGT AAPREQTRRG TTRVGQTQLW LWSSWEEPKG GRDLGVGNVQ ENSP00000223369/1-198 --CAIM---- ---------- ---------- ---------- ---------- ENSTTRP00000005723/1-198 --CAIM---- ---------- ---------- ---------- ---------- ENSBTAP00000000341/1-198 --CAIM---- ---------- ---------- ---------- ---------- 251 300 BACU019107/1-198 ---------- ---------- bmy_16666T0/1-270 IHMSSNLRPP KRVFWGRMKP ENSP00000223369/1-198 ---------- ---------- ENSTTRP00000005723/1-198 ---------- ---------- ENSBTAP00000000341/1-198 ---------- ----------