KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:05 2014 Check: 00 .. Name: ENSP00000263035/1-919 Len: 921 Check: 4350 Weight: 1.00 Name: ENSBTAP00000000364/1-921 Len: 921 Check: 5369 Weight: 1.00 Name: ENSTTRP00000007000/1-919 Len: 921 Check: 4362 Weight: 1.00 Name: bmy_22009T0/1-560 Len: 921 Check: 3054 Weight: 1.00 Name: BACU001752/1-374 Len: 921 Check: 6205 Weight: 1.00 // 1 50 ENSP00000263035/1-919 MASATAAAAR RGLGRALPLF W-RGYQTERG VYGYRPRKPE SREPQGALER ENSBTAP00000000364/1-921 MAWVAVAAAR LGLGRASPLF LRRGYQTERG VYGYRPRKPE SREPEGGLAR ENSTTRP00000007000/1-919 MALATVAATR LGLGRAPPLL LRRGYQTERG VYGYPPRKPE SREPQGGLAR bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000263035/1-919 PPVDHGLARL VTVYCEHGHK AAKINPLFTG QALLENVPEI QALVQTLQGP ENSBTAP00000000364/1-921 PPVDHGLARL VTVYCEHGHK AAKINPLFTG QALQENVPEI QALVQTLQGP ENSTTRP00000007000/1-919 PPVDHGLARL VTVYCEHGHK AAKINPLFTG QALQENVPEI QALVQTLQGP bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000263035/1-919 FHTAGLLNMG KEEASLEEVL VYLNQIYCGQ ISIETSQLQS QDEKDWFAKR ENSBTAP00000000364/1-921 FNTTGLLNMG KEEASLEEVV AYLNQIYCGQ ISIETSQLQS QEEKDWFAKR ENSTTRP00000007000/1-919 FNTAGLLNMG KEEASLEEVV AYLSQIYCGQ ISIETSQLQS QEEKEWFAKR bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000263035/1-919 FEELQKETFT TEERKHLSKL MLESQEFDHF LATKFSTVKR YGGEGAESMM ENSBTAP00000000364/1-921 FEELKKEAFT TEERKHLSKL MLESQEFDHF LATKFATVKR YGGEGAESMM ENSTTRP00000007000/1-919 FEELKKETFT TEERKHLSKL MLESQELDHF LATKFATVKR YGGEGAESMM bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000263035/1-919 GFFHELLKMS AYSGITDVII GMPHRGRLNL LTGLLQFPPE LMFRKMRGLS ENSBTAP00000000364/1-921 GFFYELLKMA AYSGVTDVII GMPHRGRLNL LTGLLQFPPE LMFRKMRGLS ENSTTRP00000007000/1-919 GFFYELLKRA AYSGVTDVII GMPHRGRLNL LTGLLQFPPE LMFRKMRGLS bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000263035/1-919 EFPENFSATG DVLSHLTSSV DLYFGAHHPL HVTMLPNPSH LEAVNPVAVG ENSBTAP00000000364/1-921 EFPENISAVG DVLSHLTSSV DLDFGAHHPL HVTMLPNPSH LEAVNPVAVG ENSTTRP00000007000/1-919 EFPENVSAAG DVLSHLTSSV DLDFGAHHPL HVTMLPNPSH LEAVNPVAVG bmy_22009T0/1-560 ---------- ---------- ---------- ---------- ---------- BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000263035/1-919 KTRGRQQSRQ DGDYSPDNSA QPGDRVICLQ VHGDASFCGQ GIVPETFTLS ENSBTAP00000000364/1-921 KTRGRQQSRQ DGDYSLDSSA QPGDKVICLQ VHGDASFCGQ GIVPETFTLS ENSTTRP00000007000/1-919 KTRGRQQSRR DGDYSPDGSA QPGDKVICLQ XXXXXXXXXX XXXXXXXXXX bmy_22009T0/1-560 ---------- ---------- ---------- VHGDASFCGQ GIVPETFTLS BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000263035/1-919 NLPHFRIGGS VHLIVNNQLG YTTPAERGRS SLYCSDIGKL VGCAIIHVNG ENSBTAP00000000364/1-921 NLPHFRIGGS VHLIVNNQLG YTTPAERGRS SLYCSDIGKL VGCAIIHVNG ENSTTRP00000007000/1-919 XXXXXRIGGR VHLNVNNQLG -TTPAERGRS S-YCSDIGKL VGCAIIHVNG bmy_22009T0/1-560 NIPHFRIGGS VHLIVNNQLG YTTPAERGRS SLYCSDIGKL VGCAIIHVNG BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000263035/1-919 DSPEEVVRAT RLAFEYQRQF RKDVIIDLLC YRQWGHNELD EPFYTNPIMY ENSBTAP00000000364/1-921 DSPEEVVRAA QLAFEYQRQF RKDVIVDLLC YRQWGHNELD EPFFTNPGMY ENSTTRP00000007000/1-919 DSPEEVVRAT RLAFEYQRQF RKDVIVDLLC YRQWGHNELD EPFFTNPVMY bmy_22009T0/1-560 DSPEEVVRAT RLAFEYQRQF RKDVIVDLLC YRQWGHNELD EPFFTNPVMY BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000263035/1-919 KIIRARKSIP DTYAEHLIAG GLMTQEEVSE IKSSYYAKLN DHLNNMAHYR ENSBTAP00000000364/1-921 QIIRARKSIP DMYAEYLMAN GLTTQEEVSE IKASYYVKLN GHLTHAAHYR ENSTTRP00000007000/1-919 QIIRARKSIP DTYAEYLVAN GLMTQEEVSE IKTSYYAKLN GHLTNMAHYS bmy_22009T0/1-560 QIIRARKSIP DTYAEYLMAN GLMTQEEVSE IKASYYAKLN GHLTNMAHYS BACU001752/1-374 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000263035/1-919 PPALNLQAHW QGLAQPEAQI TTWSTGVPLD LLRFVGMKSV EVPRELQMHS ENSBTAP00000000364/1-921 PPATSLQAHW QGLVQPEACI TSWNTGVPLD LLQFIGKKSV EVPEEFQIHS ENSTTRP00000007000/1-919 PPATNLQAHW QGLVQPEACI TTWNTGVPLD LLRFIGRKSV EVPEELQMHS bmy_22009T0/1-560 PPATNLQAHW QGLVQPEACI TTWNTGVPLD LLRFIGRKSV EVPEELQMHS BACU001752/1-374 ---------- ---------- ---------- ---------- -------MHS 551 600 ENSP00000263035/1-919 HLLKTHVQSR MEKMMDGIKL DWATAEALAL GSLLAQGFNV RLSGQDVGRG ENSBTAP00000000364/1-921 HLLKMHVQSR VEKVMDGTKL DWATAEALAL GSLLAEGFNV RLSGQDVGRG ENSTTRP00000007000/1-919 HLLKMHVQSR VEKVMDGTKL DWATAEALAL GSLLAEGFNV RLSGQDVGRG bmy_22009T0/1-560 HLLKMHVQSR VEKVMDGTKL DWATAEALAL GSLLAEGFNV RLSGQDVGRG BACU001752/1-374 HLLKMHVQSR VEKVMDGTKL DWATAEALAL GSLLAEGFNV RLSGQDVGRG 601 650 ENSP00000263035/1-919 TFSQRHAIVV CQETDDTYIP LNHMDPNQKG FLEVSNSPLS EEAVLGFEYG ENSBTAP00000000364/1-921 TFSQRHAMVV CQKTDDTYIP LNHMDPNQKG FLEVSNSPLS EEAVLGFEYG ENSTTRP00000007000/1-919 TFSQRHAMVV CQKTDDTYIP LNHMDPNQKG FLEVSNSPLS EEAVLGFEYG bmy_22009T0/1-560 TFSQRHAMVV CQKTDDTYIP LNHMDPNQKG FLEVSNSPLS EEAVLGFEYG BACU001752/1-374 TFSQRHAMVV CQKTDDTYIP LNHMDPNQKG FLEVSNSPLS EEAVLGFEYG 651 700 ENSP00000263035/1-919 MSIESPKLLP LWEAQFGDFF NGAQIIFDTF ISGGEAKWLL QSGIVILLPH ENSBTAP00000000364/1-921 MSIESPNLLP LWEAQFGDFF NGAQIIFDTF ISGGEAKWLL QSGIVVLLPH ENSTTRP00000007000/1-919 MSIESPNLLP IWEAQFGDFF NGAQIIFDTF ISGGEAKWLL QSGIVVLLPH bmy_22009T0/1-560 MSIESPNLLP LWEAQFGDFF NGAQIIFDTF ISGGEAKWLL QSGIVVLLPH BACU001752/1-374 MSIESPNLLP LWEAQFGDFF NGAQIIFDTF ISGGEAKWLL QSGIVVLLPH 701 750 ENSP00000263035/1-919 GYDGAGPDHS SCRIERFLQM CDSAEEGVDG DTVNMFVVHP TTPAQYFHLL ENSBTAP00000000364/1-921 GYDGAGPEHS SCRIERFLQM CDSTEEGVDG DTVNMCVAHP TTPAQYFHLL ENSTTRP00000007000/1-919 GYDGAGPEHS SCRIERFLQM CDSVEEGVDG DTVNMCMAHP STPAQYFHLL bmy_22009T0/1-560 GYDGAGPEHS SCRIERFLQM CDSVEEGVDG DTVNMCMAHP STPAQYFHLL BACU001752/1-374 GYDGAGPEHS SCRIERFLQM CDSVEEGVDG DTVNMCMAHP STPAQYFHLL 751 800 ENSP00000263035/1-919 RRQMVRNFRK PLIVASPKML LRLPAAVSTL QEMAPGTTFN PVIGDSSVDP ENSBTAP00000000364/1-921 RRQMIRNFRK PLILVSPKTL LRLPAAVSTL QEMAPGTTFK PVIGDSSVDP ENSTTRP00000007000/1-919 RRQMVRNFRK PLILASPKML LRLPAAVSTL QEMAPGTAFK PVIGDSSVDP bmy_22009T0/1-560 RRQMVRNFRK PLILASPKML LRLPAAVSTL QEMAPGTAFK PVIGDSSVDP BACU001752/1-374 RRQMVRNFRK PLILASPKML LRLPAAVSTL QEMAPGTAFK PVIGDSSVDP 801 850 ENSP00000263035/1-919 KKVKTLVFCS GKHFYSLVKQ RESLGAKKHD FAIIRVEELC PFPLDSLQQE ENSBTAP00000000364/1-921 KKVKSLVFCC GKHFYALMKQ RESLEARKHD FAIIRIEELC PFPLDSLQQE ENSTTRP00000007000/1-919 KKVKSLVFCC GKHFYALLKQ RESLEARKHD FAIIRMEELC PFPLDSLQEE bmy_22009T0/1-560 KKVKSLVFCC GKHFYALLKQ RESLEARKHD FAIIRMEELC PFPLDSLQEE BACU001752/1-374 KKVKSLVFCC GKHFYALLKQ RESLEARKHD FAIIRMEELC PFPLDSLQEE 851 900 ENSP00000263035/1-919 MSKYKHVKDH IWSQEEPQNM GPWSFVSPRF EKQLACKLRL VGRPPLPVPA ENSBTAP00000000364/1-921 MSKYKHVRDV IWSQEEPQNM GPWFFVSPRF EKQLACKLRL VSRPALPVPA ENSTTRP00000007000/1-919 MSKYKHVRDF IWSQEEPQNM GPWFFVSPRF EKQLACKLRL VSRPALPVPA bmy_22009T0/1-560 MSKYKH---- ---------- ---------- -------LRL VSRPALPVPA BACU001752/1-374 MSKYKHVRDF IWSQEEPQNM GPWFFVSPRF EKQLACKLRL VSRPALPVPA 901 950 ENSP00000263035/1-919 VGIGTVHLHQ HEDILAKTFA - ENSBTAP00000000364/1-921 VGIGTIHLQQ HEEILTKTFN P ENSTTRP00000007000/1-919 VGIGSVHLEQ HEEVLAKTFT Q bmy_22009T0/1-560 VGIGSVHLQQ HEEVLAKTFT Q BACU001752/1-374 VGIGSVHLQQ HEEVLAKTFT Q