KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:05 2014 Check: 00 .. Name: ENSBTAP00000000367/1-832 Len: 930 Check: 2560 Weight: 1.00 Name: ENSTTRP00000003606/1-826 Len: 930 Check: 5205 Weight: 1.00 Name: ENSP00000265686/1-830 Len: 930 Check: 5958 Weight: 1.00 Name: bmy_15191T0/1-894 Len: 930 Check: 8822 Weight: 1.00 Name: BACU003552/1-745 Len: 930 Check: 2022 Weight: 1.00 // 1 50 ENSBTAP00000000367/1-832 MGSMFRSEEV ALVQLFLPTA AAYTCVSQLG ELGLVEFRDL NASVSAFQRR ENSTTRP00000003606/1-826 MGSMFRSEEV ALVQLFLPTA AAYACVSQLG ELGLVEFRDL NASVSAFQRR ENSP00000265686/1-830 MGSMFRSEEV ALVQLFLPTA AAYTCVSRLG ELGLVEFRDL NASVSAFQRR bmy_15191T0/1-894 MGSMFRSEEV VLVQLFLPTA AAYACVSQLG ELGLVEFRD- ---------- BACU003552/1-745 MGSMFRSEEV VLVQLFLPTA AAYACVSQLG ELGLVEFRDL NASVSAFQRR 51 100 ENSBTAP00000000367/1-832 FVVDVRRCEE LEKTFTFLQE EVRRAGLMLP LPEAGLPAPP PRDLLRIQEE ENSTTRP00000003606/1-826 FVVDVRRCEE LEKTFAFLQE EVRQAGLTLP LPEGALPAPL PRDLLHIQEE ENSP00000265686/1-830 FVVDVRRCEE LEKTFTFLQE EVRRAGLVLP PPKGRLPAPP PRDLLRIQEE bmy_15191T0/1-894 ---------- ---------E EVQRAGLTLP LPEAGLPAPL PRDLLRIQEE BACU003552/1-745 FVVDVRRCEE LEKTFAFLQE EVRRAGLTLP LPEAGLPAPL PRDLLRIQEE 101 150 ENSBTAP00000000367/1-832 TDRLAQELRD VRGNQQALRA QWHQLQLHSA VLGQGHSPPS VATHTDGPSE ENSTTRP00000003606/1-826 TDRLEQELRD VRGNRQALRA QLHQLQLHSA VLGQGHGPSL AASHTDGPLE ENSP00000265686/1-830 TERLAQELRD VRGNQQALRA QLHQLQLHAA VLRQGHEPQL AAAHTDGASE bmy_15191T0/1-894 TDRLAQELRD VRGNQQALRA QLHQLQLHSA VLGQGHGPPL AASHTDGSLE BACU003552/1-745 TDRLAQELRD VRGNQQALRA QLHQLQLHSA VLGQGHGPPL AASHTDGPLE 151 200 ENSBTAP00000000367/1-832 RTPLLQAPGG PHQEIILLLL SGAIKNETAG HKRRALRRST ESPVEVLAGP ENSTTRP00000003606/1-826 RTPLLQSPGG PHQDLRVNFV AGAVEPHKAA ALERLLWRAC HG---FLIAS ENSP00000265686/1-830 RTPLLQAPGG PHQDLRVNFV AGAVEPHKAP ALERLLWRAC RG---FLIAS bmy_15191T0/1-894 RSPLLQSPGG PHQDLRVNFV AGAVEPHKAA ALERLLWRAC RG---FLIAS BACU003552/1-745 RSPLLQSPGG PHQDLRVNFV AGAVEPHKAA ALERLLWRAC RG---FLIAS 201 250 ENSBTAP00000000367/1-832 WQVPEGQLGH SVFGASASHV TNLGCYPGGP AGPRGHKIRA SVHDHMETPC ENSTTRP00000003606/1-826 FRDVEQQLEG PVTGEPATWV TFLISYWGEQ IGQKIRKITD XXXXXXXXXX ENSP00000265686/1-830 FRELEQPLEH PVTGEPATWM TFLISYWGEQ IGQKIRKITD CFHCHVFPFL bmy_15191T0/1-894 FREME-PLED PVTGEPATWM TFLISYWGEQ IGQKIHKITD CFHCHVFPFA BACU003552/1-745 FREVE-PLED PVTGEPATWM TFLISYWGEQ IGQKIRKITD CFHCHVFPFV 251 300 ENSBTAP00000000367/1-832 SPHPATPGPL GPWAHGSQPA SGGVLSGRRG TGQVTGQVPR GSGRWPGPGR ENSTTRP00000003606/1-826 XXXXXXXXXX XXXXXXXXXX XXVLGETEQF LSQVLGRVQR LLPPWQVQIR ENSP00000265686/1-830 QQEEARLGAL QQLQQQSQEL QEVLGETERF LSQVLGRVLQ LLPPGQVQVH bmy_15191T0/1-894 EQEEACRATL QQLQQQSQEL REVLGETERF LSQVLGRVQR LLPPWQVQIR BACU003552/1-745 EQEEARRAAL QQLQQQSQEL QEVLGETERF LSQVLGRVQR LLPPWQVQIR 301 350 ENSBTAP00000000367/1-832 EGASAPLRQT HSSVAGLHPG LVLETTC-TR D-PTSGSALQ DCS------- ENSTTRP00000003606/1-826 KMKPVYLALN QCSVSTTHKC VIAEA-CITL DLPTVQQALQ GRS------- ENSP00000265686/1-830 KMKAVYLALN QCSVSTTHKC LIAEAWCSVR DLPALQEALR DSS------- bmy_15191T0/1-894 KMKAVYLALN QCSVSTTHKC LIAEAWCATR DLPTLQQALQ GSSVSMAGGG BACU003552/1-745 KMKAVYLALN QCSVSTTHKC LIAEAWCATR DLPTLHQALQ GSS------- 351 400 ENSBTAP00000000367/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003606/1-826 ---------- ---------- ---------- ---------- ---------- ENSP00000265686/1-830 ---------- ---------- ---------- ---------- ---------- bmy_15191T0/1-894 GVSRPPLLPG RGWFPPHNTS PIPGAISAVP LPGLGEEGLP WVPWLPPSES BACU003552/1-745 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000000367/1-832 ---------- ---------- ---------- ---------E EAGAAPAWRC ENSTTRP00000003606/1-826 ---------- ---------- ---------- ---------S EAGVSAVVHR ENSP00000265686/1-830 ---------- ---------- ---------- ---------M EEGVSAVAHR bmy_15191T0/1-894 PQCSPSLAGR GWRVRGSLKA PAISLVCLSA CLPACRVPQS EAGVSAVVHR BACU003552/1-745 ---------- ---------- ---------- ---------S EAGVSAVVHR 451 500 ENSBTAP00000000367/1-832 SPASLPPRTL TGVDLLVAAH TIGVHDALEA GRDETRRPAP PAPCSGGFRD ENSTTRP00000003606/1-826 IPCRDMPPTL IRTNRFTASF Q-GIVDAYGV GRYQEVNPAP YTIITFPFLF ENSP00000265686/1-830 IPCRDMPPTL IRTNRFTASF Q-GIVDAYGV GRYQEVNPAP YTIITFPFLF bmy_15191T0/1-894 IPCRDMPPTL IRTNRFTASF Q-GIVDAYGV GRYQEVNPAP YTIITFPFLF BACU003552/1-745 IPCRDMPPTL IRTNRFTASF Q-GIVDAYGV GRYQEVNPAP YTIITFPFLF 501 550 ENSBTAP00000000367/1-832 SQRLGTTAHP GALGEVGVGR GLAEPEPSWR TPWRRIWRTF FGGRYLLLLM ENSTTRP00000003606/1-826 AVMFGDVGHG LLMFLFALAM VLAENRPAVK TAQNEIWRNF FEGR-LPLVM ENSP00000265686/1-830 AVMFGDVGHG LLMFLFALAM VLAENRPAVK AAQNEIWQTF FRGRYLLLLM bmy_15191T0/1-894 AVMFGDVGHG LLMFLFALAM VLAENRPAVK TAQNEIWRTF FRGRYLLLLM BACU003552/1-745 AVMFGDVGHG LLMFLFALAM VLAENRPAVK TAQNE----- ---------- 551 600 ENSBTAP00000000367/1-832 GLFSVYTGFI YNECFSRATA IFPSGWSVAA MANQSGWSDA FLAQHQLLAL ENSTTRP00000003606/1-826 GLFSVXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265686/1-830 GLFSIYTGFI YNECFSRATS IFPSGWSVAA MANQSGWSDA FLAQHTMLTL bmy_15191T0/1-894 GLFSVYTGFI YNECFSCATA VFPSGWSVAA MANQSGWSDA FLAQQPLLSL BACU003552/1-745 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000000367/1-832 DPNVTGVFLG PYPFGIDPVW SLAVNHLSFL NSFKMKMSII LGVTHMTFGV ENSTTRP00000003606/1-826 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265686/1-830 DPNVTGVFLG PYPFGIDPIW SLAANHLSFL NSFKMKMSVI LGVVHMAFGV bmy_15191T0/1-894 DPNVTGVFLG PYPFGIDPVW SLAVNHLSFL NSFKMKMSVI LGVTHMTFGV BACU003552/1-745 ---------- --------VW SLAVNHLSFL NSFKMKMSVI LGVTHMTFGV 651 700 ENSBTAP00000000367/1-832 VLGVFNHVHF GQWHRLLLET LPELVFLLGL FGYLVFLVVY KWLSFTAASA ENSTTRP00000003606/1-826 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265686/1-830 VLGVFNHVHF GQRHRLLLET LPELTFLLGL FGYLVFLVIY KWLCVWAARA bmy_15191T0/1-894 VLGVFNHMHF GQWYRLLLET LPELVFLLGL FGYLVFLVAY KWLRVTAASA BACU003552/1-745 VLGVFNHMHF GQWHRLLLET LPELVFLLGL FGYLVFLVAY KWLRVTAASA 701 750 ENSBTAP00000000367/1-832 ATAPSILIHF INMFLFSRSR TNKPLFQGQE VVQSTLVVLA LATVPVLLLG ENSTTRP00000003606/1-826 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE VVQPTLVVLA LAMVPVLLLG ENSP00000265686/1-830 ASAPSILIHF INMFLFSHSP SNRLLYPRQE VVQATLVVLA LAMVPILLLG bmy_15191T0/1-894 ASAPSILIHF INMFLFSSSP TNRPLFSGQE VVQPTLVVLA LVMVPVLLLG BACU003552/1-745 ASAPSILIHF INMFLFSSSP TNRPLFSGQE MVQPTLVVLA LAMVPVLLLG 751 800 ENSBTAP00000000367/1-832 TPLFLRRRHQ RRQSSRRRQP LDEDKAGLLG QPDVSVASQN CDEEKAGCLG ENSTTRP00000003606/1-826 TPL-FLHREH RRCHSRRRQQ PDKDTAGLLD LPDTSLASQG SDEEKAGCPG ENSP00000265686/1-830 TPLHLLHRHR RRLRRRPADR QEENKAGLLD LPDASVNGWS SDEEKAGGLD bmy_15191T0/1-894 TPL-FLCREH RRCHSRRRQQ PDKDTARLLD LPDTSLASQG SDEEKAGCPG BACU003552/1-745 TPL-FLHREH RRCHSRRRQQ PDEDTAGLLD LPDASLASQG SDEEKAGCPG 801 850 ENSBTAP00000000367/1-832 DQEEEEFVLS EVFMHQAIHT IEFCLGCISN TASYLRLWAL SLAHAQLSEV ENSTTRP00000003606/1-826 DQAEAEFVLS EVFMHQAIHT IEFCLGCISN TASYLRLWAL SLAHAQLSQV ENSP00000265686/1-830 DEEEAELVPS EVLMHQAIHT IEFCLGCVSN TASYLRLWAL SLAHAQLSEV bmy_15191T0/1-894 DQEEAEFVLS EVFMHQAIHT IEFCLGCISN TASYLRLWAL SLAHAQLSQV BACU003552/1-745 DREEAEFVLS EVFMHQAIHT IEFCLGCISN TASYLRLWAL SLAHAQLSQV 851 900 ENSBTAP00000000367/1-832 LWAMVMRVGL GLGGKMGVEA LVLVPVFAAF AVMTVAILLV MEGLSAFLHA ENSTTRP00000003606/1-826 LWAMVMRAGL SLGGEMGVAA VVLVPVFAAF AVMTVAILLV ME-LSAFLHA ENSP00000265686/1-830 LWAMVMRIGL GLGREVGVAA VVLVPIFAAF AVMTVAILLV MEGLSAFLHA bmy_15191T0/1-894 LWAMVMRAGL SLGGEMGVAA VVLVPVFAAF AVMTVAILLV MEGLSAFLHA BACU003552/1-745 LWAMVMRAGL SLGGEMGVAA VVLVPVFAAF AVMTVAILLV MEGLSAFLHA 901 950 ENSBTAP00000000367/1-832 LRLHWVEFQN KFYSGSGYKL SPFTFAVEDE ENSTTRP00000003606/1-826 LRLHWVEFQN KFYSGTGYKL SPFTFAVEGE ENSP00000265686/1-830 LRLHWVEFQN KFYSGTGYKL SPFTFAATDD bmy_15191T0/1-894 LRLHWVEFQN KFYSGTGYKL SPFTFAVEDE BACU003552/1-745 LRLHWVEFQN KFYSGTGYKL SPFTFAVEDE