KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:07 2014 Check: 00 .. Name: ENSP00000055682/1-1516 Len: 1532 Check: 2475 Weight: 1.00 Name: ENSBTAP00000000375/1-1514 Len: 1532 Check: 9877 Weight: 1.00 Name: ENSTTRP00000006575/1-1514 Len: 1532 Check: 3557 Weight: 1.00 Name: bmy_14082T0/1-1515 Len: 1532 Check: 3820 Weight: 1.00 Name: BACU014167/1-1523 Len: 1532 Check: 6570 Weight: 1.00 // 1 50 ENSP00000055682/1-1516 MDNQQDKAIV ASANGENTLI NGVKENDSED QDVAMKSFAA LEAAAPIQPT ENSBTAP00000000375/1-1514 MDNQQDKAIV ASTNGENTMI NGVKENDSED QDVAMKSFAA LEAAAPIQSI ENSTTRP00000006575/1-1514 MDNQQDKAVV ASANGENTMI NGVKENDSED QDVAMKSFAA LDAATTIQPI bmy_14082T0/1-1515 MDNQQDKAVV ASANGENTMI NGVKENDSED QDVAMKSFAA LEAATPIQPI BACU014167/1-1523 MDNQQDKAVV ASANGENTMI NGVKENDSED QDVAMKSFAA LEAATPIQPI 51 100 ENSP00000055682/1-1516 PVAQKETLMY PRGLLPLPSK KPCMQSPPSP LGLIEAPEHA ANSASVNAIS ENSBTAP00000000375/1-1514 PVAQKENLMY PRGLLPLPSK KPCMQSPPSP LGLIEAPEHA ANSASVNAIS ENSTTRP00000006575/1-1514 LVAQKEN-MY PRGLLPLPSK KPCMQSPPSP LGLIEAPEHA ANSASVNAIS bmy_14082T0/1-1515 LVAQKENLMY PRGLLPLPSK KPCMQSPPSP LGLIEAPEHA ANSASVNAIS BACU014167/1-1523 LVAQKENLMY PRGLLPLPSK KPCMQSPPSP LGLIEAPEHA ANSASVNAIS 101 150 ENSP00000055682/1-1516 LTSGIAKGLN TWSLPNECEK APFAIMEPAG MSALNGDCLM QPSRTCLGCF ENSBTAP00000000375/1-1514 LTSGVAKGLN TWSLPNECEK APFAIMEPAG MSALNGDCLM QPSRTCLGCF ENSTTRP00000006575/1-1514 LTSGVSKGLN TWSLPNECEK APFAIMEPAG MSALNGECLM QPSRTCLGCF bmy_14082T0/1-1515 LTSGVAKGLN TWSLPNECEK APFAIMEPAG MSALNGECLM QPSRTCLGCF BACU014167/1-1523 LTSGVAKGLN TWSLPNECEK APFAIMEPAG MSALNGECLM QPSRTCLGCF 151 200 ENSP00000055682/1-1516 MESKDAVDPE PGISLKVGDL NRDYETCAVS DIGIQCINAG ENMKYGEQLL ENSBTAP00000000375/1-1514 MESKDSVDPE PGISLKVSDL NRDYETCAVS DIGIQCINAG ENMKYGEQLL ENSTTRP00000006575/1-1514 MESKDAVDPE PGISLKVSDL NRDYETCAVS DIGIQCINAG ENMKYGEQLL bmy_14082T0/1-1515 MESKDAVDPE PGISLKVSDL NRDYETCAVS DIGIQCINAG ENMKYGEQLL BACU014167/1-1523 MESKDAVDPE PGISLKVSDL NRDYETCAVS DIGIQCINAG ENMKYGEQLL 201 250 ENSP00000055682/1-1516 SDQLLGFPLH KSRAGDRRET EKPDIDLEDP AQKSYYEALL LDKCNTEEAL ENSBTAP00000000375/1-1514 SDQLLGFPLH KSRAGDRREA EKPDIDLEDP GQKSYYEALL LDKCNTEEAL ENSTTRP00000006575/1-1514 SDQLLGFPLH KSRAGDRREA EKPDIDLEDP AQKSYYEALL LDKCNTEEAL bmy_14082T0/1-1515 SDQLLGFPLH KSRAGDRREA EKPDIDLEDP AQKSYYEALL LDKCNTEEAL BACU014167/1-1523 SDQLLGFPLH KSRAGDRREA EKPDIDLEDP AQKSYYEALL LDKCNTEEAL 251 300 ENSP00000055682/1-1516 LANSNQDWGY FETFISESKI ELLDLCSKNE LSVNLFSEED VDNYMFDDDE ENSBTAP00000000375/1-1514 LANSNQDWGY FETFISESKI ELLDLCSKNE LSVNLFSEED VDNYMFDDDE ENSTTRP00000006575/1-1514 LANSNQDWGY FETFISESKI ELLDLCSKNE LSVNLFSEED VDNYMFDDDE bmy_14082T0/1-1515 LANSNQDWGY FETFISESKI ELLDLCSKNE LSVNLFSEED VDNYMFDDDE BACU014167/1-1523 LANSNQDWGY FETFISESKI ELLDLCSKNE LSVNLFSEED VDNYMFDDDE 301 350 ENSP00000055682/1-1516 STLGSDVCSL KIRYESFQDN VRDKTTLLMQ EDAQFNFFPS VFTTCPKRES ENSBTAP00000000375/1-1514 STLGSDVCSL KIRYESFQDN VRDKTTLLMQ EDAQFNFFPS VFTTCPKRES ENSTTRP00000006575/1-1514 STLGSDVCSL KIRYESFQDN VRDKTTLLMQ EDAQFNFFPS VFTTCPKRES bmy_14082T0/1-1515 STLGSDVCSL KIRYESFQDN VRDKTTLLMQ EDAQFNFFPS VFTACPKRES BACU014167/1-1523 STLGSDVCSL KIRYESFQDN VRDKTTLLMQ EDAQFNFFPS VFTTCPKRES 351 400 ENSP00000055682/1-1516 KSGALKQSSD FSQFKVPDVS IIWGEEDKNL DKKKGKEEGQ EDKGVEKKDG ENSBTAP00000000375/1-1514 KTGALKQSSD FSQFKVPDVS IIWGEEDKNL DKKKGKEEGQ EEKGAEKKDG ENSTTRP00000006575/1-1514 KSGALKQSSD LSQFKVPDVS IIWGEEDKIL DKKKGKEEGQ EDKGVGKKEA bmy_14082T0/1-1515 KSGALKQSSD LSQFKVPDVS IIWGEEDKNL DKKKGKEEGQ EDKGVEKKDA BACU014167/1-1523 KSGALKQSSD LSQFKVPDVS IIWGEEDKNL DKKKGKEEGQ EDKGVEKKDA 401 450 ENSP00000055682/1-1516 KDNGEKPALN KPCSGTEVEQ LKNPKQGHLA NSLETSGSFS DDSSFIEISY ENSBTAP00000000375/1-1514 KDNDEKSALN KPCSGTEVGQ FKNLKQGHLA NSLEASGNFS DGSSFIEVSF ENSTTRP00000006575/1-1514 KDNGEKSALN KPCSGPEVGQ FKNPKQGHLA NSLEASGNFS DDSSFIEVSY bmy_14082T0/1-1515 KDNGEKSALN KPCSGPEVGQ FKNPKQGHLA NSLEASGNFS DDSSFIEVSY BACU014167/1-1523 KDNGEKSALN KPCSGPEVGQ FKNPKQGHLA NSLEASGNFS DDSSFIEVSY 451 500 ENSP00000055682/1-1516 DAMGEIKDCS RYMARDTNSG SSSSQQNYGL RAKRKVRYSE DYLYDVDSLE ENSBTAP00000000375/1-1514 DTMGEIKDCS RYMARDTNSG SSSSQQNYGL RAKRKVRYSE DYLYDVDSLE ENSTTRP00000006575/1-1514 DAMGEIKDCS RYMARDTNSG SCSSQQNYGL RAKRKVRYSE DYLYDVDSLE bmy_14082T0/1-1515 DAMGEIKDCS RYMARDTNSG SSSSQQNYGL RAKRKVRYSE DYLYDVDSLE BACU014167/1-1523 DAMGEIKDCS RYMARDTNSG SSSSQQNYGL RAKRKVRYSE DYLYDVDSLE 501 550 ENSP00000055682/1-1516 GEKVNERKEW LPVGSKEEDD DEWCPKKRRK VTRKEPPVII KYIIINRFKG ENSBTAP00000000375/1-1514 GEKVNERKEW LPGGSIEEDD DEWCPKKRRK VTRKEPPVII KYIIINRFKG ENSTTRP00000006575/1-1514 GEKVNERREW LPGGCKEEDD DEWCPKKRRK VTRKEPPVII KYIIINRFKG bmy_14082T0/1-1515 GEKVNERKEW LPGGCKEEDD DEWCPKKRRK VTRKEPPVII KYIIINRFKG BACU014167/1-1523 GEKVNERKEW LPGGCKEEDD DEWCPKKRRK VTRKEPPVII KYIIINRFKG 551 600 ENSP00000055682/1-1516 EKNMLVKLGK VDASETTVNL SENQLNKYAK LAPLKGFWQK KKKQRNTNTD ENSBTAP00000000375/1-1514 EKNMLVKLGR VDASETTVNL SENQLNKYAK LAPLKGFWQK KKKQRNSNAD ENSTTRP00000006575/1-1514 EKNMLVKLGR VDASETTVNL SETQLNKYSK LAPLKGFWQK KKKQRNSNAD bmy_14082T0/1-1515 EKNMLVKLGR VDASETTVNL SESQLNKYAK LAPLKGFWQK KKKQRNSNSD BACU014167/1-1523 EKNMLVKLGR VDASETTVNL SESQLNKYAK LAPLKGFWQK KKKQRNSNSD 601 650 ENSP00000055682/1-1516 SIKTPFSQKQ SFEPGSFEVS FLPPARKRKS KLGNRHRIQR IPSIEISASS ENSBTAP00000000375/1-1514 SSKTSLCQKQ SFEPGSFEMS FLPPARKRKS KLGNRHRIQR IPSIETSASG ENSTTRP00000006575/1-1514 SSKTPLCQKQ SFEPGSFEVS FLPPARKRKS KLGNRHRIQR IPSMETSASG bmy_14082T0/1-1515 SNKTPLCQKQ SFEPGSFEVS FLPPARKRKS KLGNRHRIQR IPSMETSASG BACU014167/1-1523 SNKTPLCQKQ SFEPGSFEVS FLPPARKRKS KLGNRHRIQR IPSMETSASG 651 700 ENSP00000055682/1-1516 KQISLCNDQR HASNHKEDGG LKGTLKSAPL GAPSCANGSH LNDITGPDSV ENSBTAP00000000375/1-1514 KQVSFCNDER QANNRKEDGG LKGTLKSAPL AASSCANGSH LNDITGPDSE ENSTTRP00000006575/1-1514 KQVSFCNDER QASSRKEDGG LKGTLKSAPL AAPSCANGSH LNDITGPDSV bmy_14082T0/1-1515 KQVSFCNDER QASSRKEDGG LKGTLKSAPL AAPGCANGSH LNDITGPDSV BACU014167/1-1523 KQVSFCNDER QASSRKEDGG LKGTLKSAPL AAPGCANGSH LNDITGPDSV 701 750 ENSP00000055682/1-1516 KVKAQDTEFK GPERKVLNKI KFKSEARLKS KKVKAAGQES KPIVQMSPLL ENSBTAP00000000375/1-1514 KVKAQDGQFK APERKVLNKI KFKSEARLKS KKIKA-GQES KPVVQMSPLL ENSTTRP00000006575/1-1514 KVKAQDAQFK GPERKVLNKI KFKSEARLKS KKIKA-GQES KPVVQMTPLL bmy_14082T0/1-1515 KVKAQDAQFK GPERKVLNKI KFKSEARLKS KKIKA-GQES KPVVQMTPLL BACU014167/1-1523 KVKAQDAQFK GPERKVLNKI KFKSEARLKS KKIKA-GQES KPVVQMTPLL 751 800 ENSP00000055682/1-1516 ENQSSKANLK NEVIPGTSNS SRLSEFHEAK AAKSSTFLPT TCSSEMPLSS ENSBTAP00000000375/1-1514 ENQSSKANSK NEPIAGTSNS SHLSEFHETK VAKNSTFLPT SCSSEMPLSS ENSTTRP00000006575/1-1514 GDQSSKANSK NEAIPGTSNG SHLSEFHETK VAKNSTFLPT TCSSEMPLSS bmy_14082T0/1-1515 GDQSSKANSK NEAIPGTSNG SHLSEFHETK VAKNSTFLPT TCSSEMPLSS BACU014167/1-1523 GDQSSKANSK NEAIPGTSNG SHLSEFHETK VAKNSTFLPT TCSSEMPLSS 801 850 ENSP00000055682/1-1516 ANVTTNIPVI PGGYLQTLLD ASDLSNNTSI SYFSHHSPEQ NEGSLTQTEK ENSBTAP00000000375/1-1514 AHVANNIPVI PGGYLQTLLD ASDLSNNTGI SYFNHHSPEQ NEDRLTQTEK ENSTTRP00000006575/1-1514 AHVANNIPVI PGGYLQTLLD ASDLSNNTGI SYFTQHSPEQ NEVSLTQTEK bmy_14082T0/1-1515 DHVANNIPVI PGGYLQTLLD ASDLSNNTGI SYFTQHSPEQ NEVSLTQTEK BACU014167/1-1523 DPVANNIPVI PGGYLQTLLD ASDLSNNTGI SYFTQHSPEQ NEVSLTQTEK 851 900 ENSP00000055682/1-1516 SFVPLQPTQD CVLTSSSDSE LQQSSHNFKM ESSNYRNVWP NKATSGTQEF ENSBTAP00000000375/1-1514 SFVPLQPSQD CVLSSPSESE LLQSSQNFKM ESSSYGDVWH NKPTSGSQEF ENSTTRP00000006575/1-1514 SFVPLQPAQD CVLSSPSESE LLQSSQNFKM ESSNYGNVWP NKPTSGSQEF bmy_14082T0/1-1515 SFVPLQPAQD CVLSSPSESE LLQSSQNFKM ESSNYGNVWP NKPTSGSQEF BACU014167/1-1523 SFVPLQPAQD CVLSSPSESE LLQSTQNFKM ESSNYGNVWP NKPTSGSQEF 901 950 ENSP00000055682/1-1516 MAEVSREIAP TQSSEFGASQ VVSMENNLTP TTYNPICLNS GGSNCNKVLY ENSBTAP00000000375/1-1514 MAEVSREIAP TQSSEFGVSQ VVSMENSLTA TTYSPICLNS GGSSCNKVIY ENSTTRP00000006575/1-1514 MAAVSREIAP NQSCEFGVSQ VVSMENNLTA TTYNPICLSS SGSSCNKVLY bmy_14082T0/1-1515 MAAVSREIAP NQSCEFGVSQ VVSMENNLTA TTYNPICLNS GGSSCNKVLY BACU014167/1-1523 MAAVSREIAP NQSCEFGVSQ VVSMENNLTA TTYNPICLNS GGSSCNKVLY 951 1000 ENSP00000055682/1-1516 DSMQDTQLPS DDSYQLCHFN NGEICFPFQQ GPVNMDDGRL FSFDSMAPLS ENSBTAP00000000375/1-1514 TSVQDTQLSS DDSYQLCHFN NGEVCFPFQQ GPVNMDNVRL FSFDSIAPLS ENSTTRP00000006575/1-1514 ASVQDTQLSS DDSYQLCHFN NGETCFPFQQ GPVNMDDGRL FSFDSMAPLS bmy_14082T0/1-1515 ASVQDTQLSS DDSYQLCHFN NGEICFPFQQ GPVNMDDGRL FSFDSMAPLS BACU014167/1-1523 ASVQDTQLSS DDSYQLCHFN NGEICFPFQQ GPVNMDDGRL FSFDSMAPLS 1001 1050 ENSP00000055682/1-1516 VSSSNYCSLS LKSCEKDGDD DITDDFLAHC SPKLVIQQSI DEIAPLKEST ENSBTAP00000000375/1-1514 VNSSNYCSLS LKSCEKDGDD DIADDFLAHC SPKLVIQQSI DEIAPLKEST ENSTTRP00000006575/1-1514 VNSSNYCSLS LKSCEKDGDD DITDDFLAHC SPKLVIQQSI DEIAPLKEST bmy_14082T0/1-1515 VNSSNYCSLS LKSCEKDGDD DITDDFLAHC SPKLVIQQSI DEIAPLKEST BACU014167/1-1523 VNSSNYCSLS LKSCEKDGDD DITDDFLAHC SPKLVIQQSI DEIAPLKEST 1051 1100 ENSP00000055682/1-1516 DLLDISNFTP DKFRHSSLSE MSPPDTPSLS PQITRCESMK TLGTLKGFQE ENSBTAP00000000375/1-1514 DLLDISNFTP DKFRHSSLSE ISPPDTPSLS PQITRCENIK TLGTLKGFQE ENSTTRP00000006575/1-1514 DLLDISNFTP DKFRHSSLSE MSPPDTPSLS PQITRCESIK TLGTLKVFQE bmy_14082T0/1-1515 DLLDISNFTP DKFRHSSLSE MSPPDTPSLS PQITRCENIK TLGTLKGFQE BACU014167/1-1523 DLLDISNFTP DKFRHSSLSE MSPPDTPSLS PQITRCENIK TLGTLKGFQE 1101 1150 ENSP00000055682/1-1516 GVPGPLDSVE KIKWDCSTLS RQVQMEDGFT LNNHQFQFHM FNDEDSVSLL ENSBTAP00000000375/1-1514 GVPGTLGNME KIKWDCSTLS QQVQVDDGFT LHNHQFQFHM FNDEDSVSLL ENSTTRP00000006575/1-1514 GVPGILGNME KIKWDCSTLS RQVQVDDGFT LNNHQFQFHM FNDEDSVSLL bmy_14082T0/1-1515 GAPGILGNME KIKWDCSTLS RQVQVDGGFT LNNHQFQFHM FNDEDSVSLL BACU014167/1-1523 GAPGILGNME KIKWDCSTLS RQVQVDDGFT LNNHQFQFHM FNDEDSVSLL 1151 1200 ENSP00000055682/1-1516 QKNPCLSTFN DPSGQISTNN KVSKSRKKSS PSKSGAMNQS SSQKNTRKKS ENSBTAP00000000375/1-1514 QKAPCLSTFN DPSSQISTSN KVSKSRKKSS PSKSGAMNQS SSQKNNRKKS ENSTTRP00000006575/1-1514 QKAPCLSAFN DPSGQMSTNN KVSKSRKKSS PNKSGATNQS SSQKNNRKKN bmy_14082T0/1-1515 QKAPCLSAFN DPSGQMSTNN KVSKSRKKSS PNKSGATNQS SSQKNNRKKT BACU014167/1-1523 QKAPCLSAFN DPSGQMSTNN KVSKSRKKSS PNKSGAMNQS SSQKNNRKKT 1201 1250 ENSP00000055682/1-1516 LKGNNKGIEK PPGKNSRQVP KSTKKGKYMA AINGEKMQIG IGRGGSQTNT ENSBTAP00000000375/1-1514 PKSNNKGMEK PPGKTSRQVP KSAKKGKFMA AINGEKMQIG ISRGGGQINS ENSTTRP00000006575/1-1514 PKANNKGIEK PPGKTSRQVP KSTKKGKFMA AVNGEKMQIG IGRGGGQVNS bmy_14082T0/1-1515 PKANNKGIEK PPGKTSRQVP KSTKKGKFMA AVNGEKMQIG IGRGGGQINS BACU014167/1-1523 PKANNKGNEK PPGKTSRQVP KSTKKGKFMA AVNGEKMQIG IGRGGGQINS 1251 1300 ENSP00000055682/1-1516 ISSTGKTLAE CIQHGGPMAS MKMPSQKGLS GDWALGKESS PGWSDMSMGT ENSBTAP00000000375/1-1514 ISSTGKTLAE CIQH-GPVAS MKMPSQKGLS GDWSLGKESS PGWNDMNMGT ENSTTRP00000006575/1-1514 ISSTGKTLAE CIQHSGPVAS MKMPSQKGLS GDWSLGKESS PGWSDMSMGT bmy_14082T0/1-1515 ISSTGKTLAE CIQHSGPVAS MKMPSQKGLS GDWSLGKESS PGWSDMSMGT BACU014167/1-1523 ISSTGKTLAE CIQHSGPVAS MKMPSQKGLS GDWSLGKESS PGWSDMSMGT 1301 1350 ENSP00000055682/1-1516 NTNSLLDDDQ REFQEPSYIL SNIASGMADV QRFMMASIEP LWEPMEHHGD ENSBTAP00000000375/1-1514 STNNLLDDDQ REFQEPSYIL SNIASGMADV QRFMMASIEP LWEPMEHHGD ENSTTRP00000006575/1-1514 NTNNLLDDDQ REFQEPSYIL SNIASGMADV QRFMMASIEP LCEPMEHHGD bmy_14082T0/1-1515 NTNNLLDDDQ REFQEPSYIL SNIASGMADV QRFMMASMEP LCEPMEHHGD BACU014167/1-1523 NTNNLLDDDQ REFQEPSYIL SNIASGMADV QRFMMASMEP LCEPMEHHGD 1351 1400 ENSP00000055682/1-1516 PNIFYSPESN SLKLKTLKIL AGTPQESKKK INSGSQGATK NHRSIKGVSK ENSBTAP00000000375/1-1514 PNIFYSPESN SLKLKTLKIL AGTPQESKKK VNSGSPGATK NHRSIKGVSK ENSTTRP00000006575/1-1514 PNIFYSPESN SLKLKTLKIL AGTPQESKKK ANSGSPGATK NHRSIKGVSK bmy_14082T0/1-1515 PNIFYSPESN SLKLKTLKIL AGTPQESKKK ANSGSPGATK NHRSIKGVSK BACU014167/1-1523 PNIFYSPESN SLKLKTLKIL AGTPQESKKK ANSGSPGATK NHRSIKGVSK 1401 1450 ENSP00000055682/1-1516 SNGKTAIGDP GRANMPGYNE DSRSTFFDKK YSNMSTLGNN GPTHKKLYRH ENSBTAP00000000375/1-1514 SNGKAAIGDP GRASMSGYNE DSRSAFFDKK LNNLSTLGNN VPTHKKLYRH ENSTTRP00000006575/1-1514 SNGKAAIGDP GRASMSGYNE DSRSAFFDKK YNNLSTLGNN GPTHKKLYRH bmy_14082T0/1-1515 SNGKAAIGDP GRASMPGYNE DSRSAFFDKK YNNLSTLGNN GPTHKKLYRH BACU014167/1-1523 SNGKAAIGDP GRASMPGYNE DSRSAFFDKK YNNLSTLGNN GPTHKKLYRH 1451 1500 ENSP00000055682/1-1516 KSSSKALRDE KCKGKHMERE QVHKDESGTA SFEKLRDSDY NLLKAET--- ENSBTAP00000000375/1-1514 KTSSKALREE KCKGKRMERE QVHKDEAGTA SFEKLRDSDY NLLNAET--- ENSTTRP00000006575/1-1514 KTSSKALRDE KCKGKRMERE QVHKDEAGTA SFEKLRDSDY NLLKAET--- bmy_14082T0/1-1515 KTSSKALRDE KCKGKRMERE QVHKDEAGTA SFEKLRDSDY NLLKAET--- BACU014167/1-1523 KTSSKALRDE KCKGKRMERE QVHKDEAGTA SFEKLR--DY ERLKATSEAI 1501 1550 ENSP00000055682/1-1516 TF-------- -----WVLPV FEEETRIFQK DI ENSBTAP00000000375/1-1514 TF-------- -----WVLPV FEEETLIFQK DI ENSTTRP00000006575/1-1514 AF-------- -----WVLPV FEEETPIFQK DI bmy_14082T0/1-1515 AF-------- -----WVLPV FEEETPIFQK DI BACU014167/1-1523 TFKSKKRFGV AGLKKWGMIE NEGQSS---- --