KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:10 2014 Check: 00 .. Name: ENSP00000401566/1-677 Len: 677 Check: 71 Weight: 1.00 Name: ENSBTAP00000000413/1-642 Len: 677 Check: 3244 Weight: 1.00 Name: BACU001908/1-575 Len: 677 Check: 3238 Weight: 1.00 Name: bmy_08665T0/1-584 Len: 677 Check: 9587 Weight: 1.00 Name: ENSTTRP00000000770/1-643 Len: 677 Check: 3998 Weight: 1.00 // 1 50 ENSP00000401566/1-677 MEETMKLATM EDTVEYCLFL IPDESRDSDK HKEILQKYIE RIITRFAPML ENSBTAP00000000413/1-642 MEENMKFATV EDTVEYRLFL IPDKPGDPEE HREILQKCIE RIMTQFAPML BACU001908/1-575 MEENMKFATV EDTVEYCLFL IPDEPRDPEE HREILQKYIE NIMTQFAPML bmy_08665T0/1-584 MEENMKFATV EDTVEYXLFL IPEEPRDPEE HREILQKYIE KIMTQFAPML ENSTTRP00000000770/1-643 MEENMKFATV EDTVEYHLFL IPDEPRDPEE HREILQKYIE KIMTQFAPML 51 100 ENSP00000401566/1-677 VPYIWQNQPF NLKYKPGKGG VPAHMFGVTK FGDNIEDEWF IVYVIKQITK ENSBTAP00000000413/1-642 VPYIWQNQPF NLKYKPGKGD VPAHIFGMTK FGDNIEDEWF IVYIVKQITK BACU001908/1-575 VPYIWQNQPF NLKYKPGKGG VPAHIFGMTK FGDNIEDEWF IVYIVKQITK bmy_08665T0/1-584 VPYIWQNQPF NLKYKPGKGG VPAHIFGMTK FGDNIEDEWF IVYVVKQITK ENSTTRP00000000770/1-643 VPYIWQNQPF NLKYKPGKGG VPAHIFGMTK FGDNIEDEWF IVYIVKQITK 101 150 ENSP00000401566/1-677 EFPELVARIE DNDGEFLLIE AADFLPKWLD PENSTNRVFF CHGELCIIPA ENSBTAP00000000413/1-642 EFPELVARIE DNDGEFLLIE AADFLPKWLD PDNSANRVFF HQGELCIIPA BACU001908/1-575 EFPELVARIE DNDGEFLLIE AADFLPKWLD PDNSANRVFF HHGELCIIPA bmy_08665T0/1-584 EFPELVARIE DNDGEFLLIE AADFLPKWLD PDNSANRVFF HHGELCIIPA ENSTTRP00000000770/1-643 EFPELVARIE DNDGEFLLIE AADFLPKWLD PDNSANRVFF HHGELCIIPA 151 200 ENSP00000401566/1-677 PRKSGAESWL PTTPPTIPQA LNIITAHSEK ILASESIRAA VNRRIRGYPE ENSBTAP00000000413/1-642 PKKSGTVSWL PTTPPTISQA LSIISTHPEK ILASESVRAA VNRRIRGYPE BACU001908/1-575 PKKPEAVSWL PTTVQTISQA LNIISTHPEK ILASESIRAA VNRRIRGYPE bmy_08665T0/1-584 PKKPEAVSWL PTTVQTISQA LNIISAHPEK ILASESIRAA VNRRIRGYPE ENSTTRP00000000770/1-643 PKKPGAVSWL PTTLQTISQA LNIISTHPEK ILASESIRAA VNRRIRGYPE 201 250 ENSP00000401566/1-677 KIQASLHRAH CFLPAGIVAV LKQRPRLVAA AVQAFYLRDP IDLRACRVFK ENSBTAP00000000413/1-642 KIKASLHQAH CFLPAGIAAV LKQCPRLVAA GVQAFYLRDP IDLRACRIFK BACU001908/1-575 KIKASLHQAH CFLPAGIVAV LKQRPRLVAA GVQAFYLRDP IDLRACRIFK bmy_08665T0/1-584 KIKASLHQAH CFLPAGIVAV LKQHPRLVAA GVQAFYLRDP IDLRACRIFK ENSTTRP00000000770/1-643 KIKASLHQAH CFLPAGIVAV LKQRPRLVAA GVQAFYLRDP IDLRACRIFK 251 300 ENSP00000401566/1-677 TFLPETRIMT SVTFTKCLYA QLVQQRFVPD RRSGYRLPPP SDPQYRAHEL ENSBTAP00000000413/1-642 TFLPETRIMT SVTFTKCLYA QLVQQRFVPD RRSGYKLPPP CHPQYRAHEL BACU001908/1-575 TFLPETRIMT SVTFTKCLYA QLVQQRFMPD LRSGYKLPPP SHPQYRAHEL bmy_08665T0/1-584 TFLPETRIMT SVTFTKCLYA QLVQQRFVPD LRSGYKLPPP SHPQYRAHEL ENSTTRP00000000770/1-643 TFLPETRIMT SVTFTKCLYA QLVQQRFVPD LRSGYRLPPP SHPQYRAHEL 301 350 ENSP00000401566/1-677 GMKLAHGFEI LCSKCSPHFS DCKKSLVTAS PLWASFLESL KKNDYFKGLI ENSBTAP00000000413/1-642 GMKLAHGFEI LCSKCSPHFS DS-KSLVTTS PLWAGFLESL KKNDYFKGLM BACU001908/1-575 GMKLAHGFEI LCSKCSPQFS DAKKSLVTTS PLWAGFLESL KKNDYFKGLI bmy_08665T0/1-584 GMKLAHGFEI LCSKCSPHFS DAKKSLVTTS PLWAGFLESL KKNDYFKGLI ENSTTRP00000000770/1-643 GMKLAHGFEI LCSKCSPHFS DAKKSLVTTS PLWAGFLESL KKNDYFKGLM 351 400 ENSP00000401566/1-677 EGSAQYRERL EMAENYFQLS VDWPERLEVQ WRDPGLLQAP PPGFTPFICL ENSBTAP00000000413/1-642 EGSVQYQERL EMAKNYFQLS VNRPE----- ---------- ---------- BACU001908/1-575 EGSAQYQERL EMAKNYFQLS INRPE----- ---------- ---------- bmy_08665T0/1-584 EGSAQYQERL EMAKNYFQLS INRPE----- ---------- ---------- ENSTTRP00000000770/1-643 KGSAQYQERL EMAKNYFQLS INRPE----- ---------- ---------- 401 450 ENSP00000401566/1-677 SLLSTWDNSS LAMSPGEEIL TLLQTIPFDI EDLKKEAANL PPEDDDQWLD ENSBTAP00000000413/1-642 --------SS HAMSPGEEIL TLLQTIPFDI EELKKEEAYL PPEDDERWLD BACU001908/1-575 --------SS HAMSPGEEIL TLLQTIPFDI EELKKEEANL PPEDDDQWLD bmy_08665T0/1-584 --------SS HAMSPGEEIL TLLQTIPFDI EELKKEEANL PPENDDQWLD ENSTTRP00000000770/1-643 --------SS HAMSPGEEIL TLLQTIPFDI EELKKEEANL PPEDDDQWLD 451 500 ENSP00000401566/1-677 LSPDQLDQLL QEAVGKKESE SVSKEEKEQN YDLTEVSESM KAFISKVSTH ENSBTAP00000000413/1-642 LSPDQLDQLL QEAAGKKEPE PISKGQ-EEN YDLTQVSESM KAFISKVSTH BACU001908/1-575 LSPDQLDQLL QEAAGKKEPE PVSKGQ-EEN YDLTQVSESM KAFISKVSTH bmy_08665T0/1-584 LSPDQLDQLL QEAAGKKEPE PVSKGQ-EEN YDLTQVSESM KAFISKVSTH ENSTTRP00000000770/1-643 LSPDQLDQLL QEAAGKKEPE PVSKGQ-EEN YDLTQVSESM KAFISKVSTH 501 550 ENSP00000401566/1-677 KGAELPREPS EAPITFDADS FLNYFDKILG PRPNESDSDD LDDEDFECLD ENSBTAP00000000413/1-642 KGAEVPREPS EAPITFDADS FLNYFDKILG SKSHESDSDD LDEEDSECLD BACU001908/1-575 KGAELPREHS ETPVTFDADS FLNYLDKILG SRPHDSDSDD LDEEDSECLD bmy_08665T0/1-584 KGAELPREHS ETPVTFDADS FLNYFDKILG ---------- ----ELQC-- ENSTTRP00000000770/1-643 KGAELPREHS EAPVTFDADS FLNYFDKILG SRPHDSDSDE LDEEDSECLD 551 600 ENSP00000401566/1-677 SDDDLDFETH EPGEEASLKG TLDNLKSYMA QMDQELAHTC ISKSFTTRNQ ENSBTAP00000000413/1-642 SDDDVDLETQ EAGEEASVKG TLDDLKSYMA QMDRELAHTS IAKSFTTQKQ BACU001908/1-575 SDDDLDLETQ EPGEETSVKG TLDDLKSYMA QMDQELAHTS IGKSFTXXXX bmy_08665T0/1-584 ---------- ---------- ---DVYFHFA S--------- ---------- ENSTTRP00000000770/1-643 SDDDLDLKTQ EPGEEASVKG TLADLKSYMA QMDQELAHTS IGKSFTTQKQ 601 650 ENSP00000401566/1-677 VEPVSQTTDN NSDEEDSGTG ESVMAPVDVD LNLVSNILES YSSQAGLAGP ENSBTAP00000000413/1-642 MEPLSQTTND NPEEEDSGTG GSVMTPVDVD LNLVSNILES YSSQAGLAGP BACU001908/1-575 XXXXXXX--- ---------- ---------- ---------- ---------- bmy_08665T0/1-584 -EPLSQTASN NSEEEDSGAG GSVMTPVDVD LNLVSNVLES YSSQAGLAGP ENSTTRP00000000770/1-643 MEPLSQTASN NSEEEDSGAG GSVMTPVDID LNLVSNILES YSSQAGLAGP 651 700 ENSP00000401566/1-677 ASNLLQSMGV QLPDNTDHRP TSKPTKN ENSBTAP00000000413/1-642 ASNLLQSMGV QLPDNADHRP TSKPTKD BACU001908/1-575 ---------- ---------P F------ bmy_08665T0/1-584 ASNLLQSMGV QLPDSADHRP VSKPTKD ENSTTRP00000000770/1-643 ASNLLQSMGV QLPDSADHGP ISKPTKD