KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:13 2014 Check: 00 .. Name: bmy_21424T0/1-960 Len: 1208 Check: 4459 Weight: 1.00 Name: ENSP00000274473/1-1140 Len: 1208 Check: 6676 Weight: 1.00 Name: ENSTTRP00000005082/1-1137 Len: 1208 Check: 671 Weight: 1.00 Name: ENSBTAP00000000434/1-1136 Len: 1208 Check: 8553 Weight: 1.00 Name: BACU013045/1-1145 Len: 1208 Check: 2069 Weight: 1.00 // 1 50 bmy_21424T0/1-960 ------MAVT QRCSCDSRRK GPIVRGLADA PFHCVEMLK- ---IGEQSVT ENSP00000274473/1-1140 -------MVI SLNSCLS--- ---------- -FICLLLCHW IGTASPLNLE ENSTTRP00000005082/1-1137 -------MVI SLNSCLG--- ---------- -FICILLCHW IRTASSLNLE ENSBTAP00000000434/1-1136 -------MVI SSNSCPG--- ---------- -FICLLLCHW IRTASSLNLE BACU013045/1-1145 MGCSSETMVI SLNSCLG--- ---------- -FICILLCPW IRTASSLNLE 51 100 bmy_21424T0/1-960 SEDHCPEDAS YSVTVQESYP HPFDQIYYTS CTDILNWFKC TRHRISYRTA ENSP00000274473/1-1140 DPNVCSHWES YSVTVQESYP HPFDQIYYTS CTDILNWFKC TRHRVSYRTA ENSTTRP00000005082/1-1137 DPNVCSHWES YSVTVQESYP HPFDQIYYTS CTDILNWFKC TRHRISYRTA ENSBTAP00000000434/1-1136 DPNVCSHWES YSVTVQESYP HPFDQIYYTS CTDILNWFKC TRHRISYRTA BACU013045/1-1145 DPNVCSHWES YSVTVQESYP HPFDQIYYTS CTDILNWFKC TRHRISYRTA 101 150 bmy_21424T0/1-960 YRHGEKTMYR RKSQCCPGFY ESREMCVPHC ADKCVHGRCI APNTCQCEPG ENSP00000274473/1-1140 YRHGEKTMYR RKSQCCPGFY ESGEMCVPHC ADKCVHGRCI APNTCQCEPG ENSTTRP00000005082/1-1137 YRHGEKTMYR RKSQCCPGFY ESREMCVPHC ADKCVHGRCI APNTCQCEPG ENSBTAP00000000434/1-1136 YRHGEKTMYR RKSQCCPGFY ESREMCVPHC ADKCVHGRCI APNTCQCEPG BACU013045/1-1145 YRHGEKTMYR RKSQCCPGFY ESREMCVPHC ADKCVHGRCI APNTCQCEPG 151 200 bmy_21424T0/1-960 WGGTNCSSAC DGDHWGPHCS SRCQCKNGAL CNPITGACHC AAGFRGWRCE ENSP00000274473/1-1140 WGGTNCSSAC DGDHWGPHCT SRCQCKNGAL CNPITGACHC AAGFRGWRCE ENSTTRP00000005082/1-1137 WGGTNCSSAC DGDHWGPHCS SRXXXXXXXX XXXXXXXXXX XXXXXXXXCE ENSBTAP00000000434/1-1136 WGGTNCSSAC DGDHWGPHCS SRCQCKNGAL CNPITGACHC AAGFRGWRCE BACU013045/1-1145 WGGTNCSSAC DGDHWGPHCS SRCQCKNGAL CNPITGACHC AAGFRGWRCE 201 250 bmy_21424T0/1-960 ERCEQGTYGN DCHQRCQCQN GATCDHVTGE CRCPPGYTGA L--------- ENSP00000274473/1-1140 DRCEQGTYGN DCHQRCQCQN GATCDHVTGE CRCPPGYTGA FCEDLCPPGK ENSTTRP00000005082/1-1137 ERCEQGTYGN DCHQRCQCQN GA-CDHVTGE CRCPPGYTGA FCEDLCPPGK ENSBTAP00000000434/1-1136 ERCEQGTYGN DCHQRCQCQN GATCDHVTGE CRCPPGYTGA FCEDLCPPGK BACU013045/1-1145 ERCEQGTYGN DCHQRCQCQN GATCDHVTGE CRCPPGYTGA FCEDLCPPGK 251 300 bmy_21424T0/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000274473/1-1140 HGPQCEQRCP CQNGGVCHHV TGECSCPSGW MGTVCGQPCP EGRFGKNCSQ ENSTTRP00000005082/1-1137 HGPQCEQRCP CQNGGVCHHV TGECSCPSGW LGTVCGQPCP EGRFGKNCSQ ENSBTAP00000000434/1-1136 HGPQCEQRCP CQNGGVCHHV TGECSCPPGW LGTVCGQPCP EGRFGKNCSQ BACU013045/1-1145 HGPQCEQRCP CQNGGVCHHV TGECSCPSGW LGTVCGQPCP EGRFGKNCSQ 301 350 bmy_21424T0/1-960 ---------- ---------- -------CQD ECPVGTYGVR CAETCQCVNG ENSP00000274473/1-1140 ECQCHNGGTC DAATGQCHCS PGYTGERCQD ECPVGTYGVL CAETCQCVNG ENSTTRP00000005082/1-1137 ECQCHNGGTC DATTGQCHCS PGYTGERCQD ECPVGTYGVR CAETCQCVNG ENSBTAP00000000434/1-1136 ECQCHNGGTC DAATGQCHCS PGYTGERCQD ECPVGTYGVH CAETCQCING BACU013045/1-1145 ECQCHNGGTC DATTGQCHCS PGYTGERCQD ECPVGTYGVR CAETCQCVNG 351 400 bmy_21424T0/1-960 GKCYHVSGSC LCEAGFAGDR CEARLCPEGL YGIKCDKWCP CHLDNTHSCH ENSP00000274473/1-1140 GKCYHVSGAC LCEAGFAGER CEARLCPEGL YGIKCDKRCP CHLENTHSCH ENSTTRP00000005082/1-1137 GKCYHVSGSC LCEAGFAGDR CEARLCPEGL YGIKCDKWCP CHLDNTHSCH ENSBTAP00000000434/1-1136 GKCYHVSGSC LCEAGFSGDR CEARLCPEGL YGIRCDKRCP CHVDNTLSCH BACU013045/1-1145 GKCYHVSGSC LCEAGFAGDR CEARLCPEGL YGIKCDKWCP CHLDNTHSCH 401 450 bmy_21424T0/1-960 PMSGECACKP GWSGLYCNET CSPGFYGEAC QQICSCQNGA DCDSVTGKCT ENSP00000274473/1-1140 PMSGECACKP GWSGLYCNET CSPGFYGEAC QQICSCQNGA DCDSVTGKCT ENSTTRP00000005082/1-1137 PMSGECACKP GWSGLYCNET CSPGFYGEAC QQICSCQNGA DCDSVTGKCT ENSBTAP00000000434/1-1136 PMSGECACKP GWSGLYCNET CSPGFYGEAC QQICSCQNGA DCDSVTGKCI BACU013045/1-1145 PMSGECACKP GWSGLYCNET CSPGFYGEAC QQICSCQNGA DCDSVTGKCT 451 500 bmy_21424T0/1-960 CAPGFK---- ---------- ---------- ---------- ---------- ENSP00000274473/1-1140 CAPGFKGIDC STPCPLGTYG INCSSRCGCK NDAVCSPVDG SCTCKAGWHG ENSTTRP00000005082/1-1137 CAPGFKGIDC STPCPLGTYG INCSSLCGCR NDAVCSPVDG SCTCKAGWHG ENSBTAP00000000434/1-1136 CAPGFKGIDC SIPCPLGTYG INCSSLCSCK NDAVCSPVDG SCTCNAGWHG BACU013045/1-1145 CAPGFKGIDC STPCPLGTYG INCSSLCGCK NDAVCSPVDG SCTCKAGWHG 501 550 bmy_21424T0/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000274473/1-1140 VDCSIRCPSG TWGFGCNLTC QCLNGGACNT LDGTCTCAPG WRGEKCELPC ENSTTRP00000005082/1-1137 VDCSISCPSG TWGFGCNLTC QCLNGGACNT LDGTCTCAPG WRGEKCEFPC ENSBTAP00000000434/1-1136 VDCSISCPSG TWGFGCNLTC QCLNGGACNT LDGTCTCAPG WRGEKCEFPC BACU013045/1-1145 VDCSISCPSG TWGFGCNLTC QCLNGGACNT LDGTCTCAPG WRGEKCEFPC 551 600 bmy_21424T0/1-960 -DGTYGLNCA ERCDCSHADG CHPTTGHCRC LPGWSASQAP APTASHSALP ENSP00000274473/1-1140 QDGTYGLNCA ERCDCSHADG CHPTTGHCRC LPGW------ ---------- ENSTTRP00000005082/1-1137 QDGTYGLNCA ERCDCSHADG CHPTTGHCRC LPGW------ ---------- ENSBTAP00000000434/1-1136 QDGTYGLNCA ERCDCSHADG CHSTTGHCRC LPGW------ ---------- BACU013045/1-1145 QDGTYGLNCA ERCDCSHADG CHPTTGHCRC LPGW------ ---------- 601 650 bmy_21424T0/1-960 VCLVSGVHCD SVCAEGRWGP NCSLPCYCKN GASCSPDDGI CECAPGFRGT ENSP00000274473/1-1140 ----SGVHCD SVCAEGRWGP NCSLPCYCKN GASCSPDDGI CECAPGFRGT ENSTTRP00000005082/1-1137 ----SGVHCD SVCTEGRWGP NCSLPCYCKN GASCSPDDGI CECAPGFRGT ENSBTAP00000000434/1-1136 ----SGVHCD SVCAEGRWGP NCSLPCYCKN GASCSPDDGI CECAPGFRGT BACU013045/1-1145 ----SGIHCD SVCAEGRWGP NCSLPCYCKN GASCSPDDGI CECAPGFRGT 651 700 bmy_21424T0/1-960 TCQRICSPGF YGHRCSQTCP QCVHSSGPCH HITGLCDCLP GFTGALCNE- ENSP00000274473/1-1140 TCQRICSPGF YGHRCSQTCP QCVHSSGPCH HITGLCDCLP GFTGALCNEV ENSTTRP00000005082/1-1137 TCQRICSPGF YGHRCSQTCP QCVHSSGPCH HITGLCDCLP GFTGALCNEV ENSBTAP00000000434/1-1136 TCQRICSPGF YGHRCSQTCP QCVHSSGPCH HITGLCDCLP GFTGALCNEV BACU013045/1-1145 TCQRICSPGF YGHRCSQTCP QCVHSSGPCH HITGLCDCLP GFTGALCNEV 701 750 bmy_21424T0/1-960 ---------- -GICTCTNNG TCNPIDRSCQ CYPGWIGSDC SQPCPPAHWG ENSP00000274473/1-1140 CPSGRFGKNC AGICTCTNNG TCNPIDRSCQ CYPGWIGSDC SQPCPPAHWG ENSTTRP00000005082/1-1137 CPSGRFGKNC AGICTCTNNG TCNPIDRSCQ CYPGWIGSDC SQPCPPVHWG ENSBTAP00000000434/1-1136 CPSGRFGKNC AGICTCTNNG TCNPIDRSCQ CYPGWIGSDC SQPCPPAHWG BACU013045/1-1145 CPSGRFGKNC AGICTCTNNG TCNPIDRSCQ CYPGWIGSDC SQPCPPAHWG 751 800 bmy_21424T0/1-960 PNCIHTCNCH NGAFCSAYDG ECKCTPGWTG LYCTQRCPLG FYGKDCALIC ENSP00000274473/1-1140 PNCIHTCNCH NGAFCSAYDG ECKCTPGWTG LYCTQRCPLG FYGKDCALIC ENSTTRP00000005082/1-1137 PNCIHTCNCH NGAFCSAYDG ECKCTPGWTG LYCTQRCPLG FYGKDCALIC ENSBTAP00000000434/1-1136 PNCIHTCNCH NGAFCSAYDG ECKCTPGWTG LYCTQRCPLG FYGKDCALVC BACU013045/1-1145 PNCIHTCNCH NGAFCSAYDG ECKCTPGWTG LYCTQRCPLG FYGKDCALIC 801 850 bmy_21424T0/1-960 RCQNGADCDH ISGQCTCRTG FMGK------ ---------- ---------- ENSP00000274473/1-1140 QCQNGADCDH ISGQCTCRTG FMGRHCEQKC PSGTYGYGCR QICDCLNNST ENSTTRP00000005082/1-1137 QCQNGADCDH ISGQCTCRTG FMGKHCEQKC PAGTYGYGCR QICDCLNNST ENSBTAP00000000434/1-1136 QCQNGADCDH ISGQCTCRTG FMGKHCEQKC PAGTYGYGCR QICDCLNNST BACU013045/1-1145 RCQNGADCDH ISGQCTCRTG FMGKQCEQKC PAGTYGYGCR QICDCLNNST 851 900 bmy_21424T0/1-960 ---------- -------RCE QTGVIIVGNL NSLSRTSTAL PTDSYQIGAI ENSP00000274473/1-1140 CDHITGTCYC SPGWKGARCD QAGVIIVGNL NSLSRTSTAL PADSYQIGAI ENSTTRP00000005082/1-1137 CDHITGTCYC SPGWKGARCD QAGVIIVGNL NSLSRTSTAL PTDSYQIGAI ENSBTAP00000000434/1-1136 CDHITGTCYC SPGWKGARCD QAGVIIVGNL NSLSRTSTAL PADSYQIGAI BACU013045/1-1145 CDHITGTCYC SPGWKGARCD QAGVIIVGNL NSLSRTSTAL PTDSYQIGAI 901 950 bmy_21424T0/1-960 AGIIILVLVV LFLLALFIIY RHKQKGKESS MPAVTYTPAM RVMNADYAIS ENSP00000274473/1-1140 AGIIILVLVV LFLLALFIIY RHKQKGKESS MPAVTYTPAM RVVNADYTIS ENSTTRP00000005082/1-1137 AGIIILVLVV LFLLALFIIY RHKQKGKESS MPAVTYTPAM RVMNADYAIS ENSBTAP00000000434/1-1136 AGIIILVLVV LFLLALFIIY RHKQKGKESS MPAVTYTPAM RVMNADYAIS BACU013045/1-1145 AGIIILVLVV LFLLALFIIY RHKQKGKESS MPAVTYTPAM RVMNADYAIS 951 1000 bmy_21424T0/1-960 ETLPHSNGGN ANSHYFTNPS YHTLTQCATS PHVNNRDRMT IAKSKNNQLF ENSP00000274473/1-1140 GTLPHSNGGN ANSHYFTNPS YHTLTQCATS PHVNNRDRMT VTKSKNNQLF ENSTTRP00000005082/1-1137 ETLPHSNGGN ANSHYFTNPS YHTLTQCATS PHVNNRDRMT IAKSKNNQLF ENSBTAP00000000434/1-1136 ETLPHGNGGN ANSHYFTNPS YHTLTQCATS PHVNNRDR-- IAKSKNNQLF BACU013045/1-1145 ETLPHSNGGN ANSHYFTNPS YHTLTQCATS PHVNNRDRMT IAKSKNNQLF 1001 1050 bmy_21424T0/1-960 VNLKNVNPGK RGPVVDYTGT LPADWKHGGY LNELGKSPAF PTFTSIFVFY ENSP00000274473/1-1140 VNLKNVNPGK RGPVGDCTGT LPADWKHGGY LNELGA---- ---------- ENSTTRP00000005082/1-1137 VNLKNVNPGK RGPVVDYTGT LPADWKHGGY LNELGA---- ---------- ENSBTAP00000000434/1-1136 VNLKNVNPGK RGPVVDYTGT LPADWKHGGY LNELGA---- ---------- BACU013045/1-1145 VNLKNVNPGK RGPVVDYTGT LPADWKHGGY LNELGA---- ---------- 1051 1100 bmy_21424T0/1-960 PHWIFFSSFV TGAFGLDRSY MGKSLKDLGK HSEYNSSNCS LSSSENPYAT ENSP00000274473/1-1140 ---------- ---FGLDRSY MGKSLKDLGK NSEYNSSNCS LSSSENPYAT ENSTTRP00000005082/1-1137 ---------- ---FGLDRSY MGKSLKDLGK HSEYNSSNCS LSSSENPYAT ENSBTAP00000000434/1-1136 ---------- ---FGLDRSY MGKSLKDLGK HSEYNSSNCS LSSSENPYAT BACU013045/1-1145 ---------- ---FGLDRSY MGKSLKDLGK HSEYNSSNCS LSSSENPYAT 1101 1150 bmy_21424T0/1-960 IKDPPILIPK HSECGYVEMK SPVRRDSPYA EINNSTSAHK NVYEVEPTVS ENSP00000274473/1-1140 IKDPPVLIPK SSECGYVEMK SPARRDSPYA EINNSTSANR NVYEVEPTVS ENSTTRP00000005082/1-1137 IKDPPVLIPK HSECGYVEMK SPARRDSPYA EINNSTSANK NVYEIEPTVS ENSBTAP00000000434/1-1136 IKDPPVLIPK HSECGYVEMK SPARRDSPYA EINNSASANK NVYEVEPTVS BACU013045/1-1145 IKDPPILIPK HSECGYVEMK SPARRDSPYA EINNSTSANK NVYEVEPTVS 1151 1200 bmy_21424T0/1-960 VVQGIFSNNG HLTQDPYDLP KNSHIPCHYD LLPVRDSSSS PKQEDGGGSS ENSP00000274473/1-1140 VVQGVFSNNG RLSQDPYDLP KNSHIPCHYD LLPVRDSSSS PKQEDSGGSS ENSTTRP00000005082/1-1137 VVQGIFSNNG HLTQDPYDLP KNSHIPCHYD LLPVRDSSSS PKQEDGGGSS ENSBTAP00000000434/1-1136 VVQGIFSNNG HRTQDPYDLP KNSHIPCHYD LLPVRDSSSS PKQEDGGSSS BACU013045/1-1145 VVQGIFSNNG HLTQDPYDLP KNSHIPCHYD LLPVRDSSSS PKQEDGGGSS 1201 1250 bmy_21424T0/1-960 SSSSSE-- ENSP00000274473/1-1140 SNSSSSSE ENSTTRP00000005082/1-1137 SNSNSE-- ENSBTAP00000000434/1-1136 SSSSSE-- BACU013045/1-1145 SSSSSE--