KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:14 2014 Check: 00 .. Name: ENSP00000223127/1-738 Len: 751 Check: 4345 Weight: 1.00 Name: ENSBTAP00000000447/1-751 Len: 751 Check: 3225 Weight: 1.00 Name: ENSTTRP00000004507/1-739 Len: 751 Check: 2971 Weight: 1.00 Name: bmy_12078T0/1-642 Len: 751 Check: 8032 Weight: 1.00 Name: BACU012055/1-739 Len: 751 Check: 2912 Weight: 1.00 // 1 50 ENSP00000223127/1-738 ---------- -MTSSGPGPR FLLLLPLLL- -PPAASASDR PRGRDPVNPE ENSBTAP00000000447/1-751 MRACVQLGPL SAMASGPELR PLLLLLLLLS PSPAASASDR PRGSDPVNPE ENSTTRP00000004507/1-739 ---------- --MASGPGLR LLLLLLLLLS PPPEASASNR PRGSDPVNPE bmy_12078T0/1-642 ---------- --MASGPGLR LLLLLLLLLS PPPEASASNR PRGSDPVNPE BACU012055/1-739 ---------- --MASGPGLR LLLLLLLLLS PPPEASASNR PRGSDPVNPE 51 100 ENSP00000223127/1-738 KLLVITVATA ETEGYLRFLR SAEFFNYTVR TLGLGEEWRG GDVARTVGGG ENSBTAP00000000447/1-751 KMLVITVATA ETEGYRRFLQ SAEFFNYTVR TLGLGEEWRG GDVARTVGGG ENSTTRP00000004507/1-739 KLLVITVATG ETEGYRRFLR SAEFFNYTVR TLGLGQEWRG GDVARTVGGG bmy_12078T0/1-642 KLLVITVATG ETEGYRRFLR SAEFFNYTVR TLGLGQEWRG GDVARTVGGG BACU012055/1-739 KLLVITVATG ETEGYRRFLR SAEFFNYTVR TLGLGQEWRG GDVARTVGGG 101 150 ENSP00000223127/1-738 QKVRWLKKEM EKYADREDMI IMFVDSYDVI LAGSPTELLK KFVQSGSRLL ENSBTAP00000000447/1-751 QKVRWLKKEM EKYAEREDMV IMFVDSYDVV LAGSPSELLK KFVQSGSRLL ENSTTRP00000004507/1-739 QKVRWLKKEM EKYADRGDMV IMFVDSYDVI LAGSPSELLK KFVQSGSRLL bmy_12078T0/1-642 QKVRWLKKEM EKYADREDMV IMFVDSYDVI LAGSPSELLK KFVQSGSRLL BACU012055/1-739 QKVRWLKKEM EKYAVREDMV IMFVDSYDVI LAGSPSELLK KFVQSGSRLL 151 200 ENSP00000223127/1-738 FSAESFCWPE WGLAEQYPEV GTGKRFLNSG GFIGFATTIH QIVRQWKYKD ENSBTAP00000000447/1-751 FSAESFCWPE WGLAEQYPEV GTGKRFLNSG GFIGFAPTIH QIVRQWKYKD ENSTTRP00000004507/1-739 FSAEAFCWPE WGLAEQYPEV GTGKRFLNSG GFIGFAPAIH QIVRQWKYKD bmy_12078T0/1-642 FSAEGFCWPE WGLAEQYPEV GTGKRFLNSG GFIGFAPAIH QIVRQWKYKD BACU012055/1-739 FSAEGFCWPE WGLAEQYPEV GTGKRFLNSG GFIGFAPAIH QIVRQWKYKD 201 250 ENSP00000223127/1-738 DDDDQLFYTR LYLDPGLREK LSLNLDHKSR IFQNLNGALD EVVLKFDRNR ENSBTAP00000000447/1-751 DDDDQLFYTR LYLDPGLREK LGLSLDHKSR IFQNLNGALD EVVLKFGRNR ENSTTRP00000004507/1-739 DDDDQLFYTR LYLDPGLREK LSLNLDHKSQ IFQNLNGALD EVVLKFGRNR bmy_12078T0/1-642 DDDDQLFYTR LYLDPGLREK LSLNLDHKSQ IFQNLNGALD EVVLKFGRNR BACU012055/1-739 DDDDQLFYTR LYLDPGLREK FSLNLDHKSQ IFQNLNGALD EVVLKFGRNR 251 300 ENSP00000223127/1-738 VRIRNVAYDT LPIVVHGNGP TKLQLNYLGN YVPNGWTPEG GCGFCNQDRR ENSBTAP00000000447/1-751 VRIRNVAYDT LPVVVHGNGP TKLQLNYLGN YVPNGWTPEG GCGFCNQGRR ENSTTRP00000004507/1-739 VRIRNVAYDT LPVVVHGNGP TKLQLNYLGN YVPNGWTPEG GCGFCDQDRR bmy_12078T0/1-642 VRIRNVAYDT LPVVVHGNGP TKLQLNYLGN YVPNGWTPEG GCGFCDQDRR BACU012055/1-739 VRIRNVAYDT LPVVVHGNGP TKLQLNYLGN YVPNGWTPEG GCGFCDQDRR 301 350 ENSP00000223127/1-738 TLPGGQPPPR VFLAVFVEQP TPFLPRFLQR LLLLDYPPDR VTLFLHNNEV ENSBTAP00000000447/1-751 PLPGGQPPPR VLLAVFVEQP TPFLPRFLQR LLLLDYPPDR VTLFLHNNEV ENSTTRP00000004507/1-739 PLPGGQTPPR VLLAVFVEQP TPFLPRFLQR LLLLDYPSDR VTLFLHNNEV bmy_12078T0/1-642 PLPGGQTPPR VLLAVFVEQP SPFLPRFLQR LLLLDYPPDR VTLFLHNN-- BACU012055/1-739 PLPGGQTPPR VLLAVFVEQP SPFLPRFLQR LLLLDYPPDR VTLFLHNNEV 351 400 ENSP00000223127/1-738 FHEPHIADSW PQLQDHFSAV KLVGPEEALS PGEARDMAMD LCRQDPECEF ENSBTAP00000000447/1-751 YHEPHIDESW PQLQDHFSAV KLVGPEEALT PGEARDMAMD ICRQDPKCEF ENSTTRP00000004507/1-739 YHEPHIADSW PQLQDHFSAV KLVGPEEGLT PGEARDMAMD ICRQDPKCEF bmy_12078T0/1-642 ---------- ---------- ---------- ---------- ---------- BACU012055/1-739 YHEPHIADSW PQLQDHFSAV KLVGPEEGLT PGEARDMAMD ICRQDPRCEF 401 450 ENSP00000223127/1-738 YFSLDADAVL TNLQTLRILI EENRKVIAPM LSRHGKLWSN FWGALSPDEY ENSBTAP00000000447/1-751 YFSLDADTVI TNPQTLRILI EANRKVIAPM LSRHGKLWSN FWGALSPDEY ENSTTRP00000004507/1-739 YFSLDADAVI SNPQTLRILI EENRKVIAPM LSRHGKLWSN FWGALSPDEY bmy_12078T0/1-642 ---------- ---------- -----VMAPM LSRHGKLWSN FWGALSPDEY BACU012055/1-739 YFSLDADAVI SNPQTLRILI EENRKVIAPM LSRHGKLWSN FWGALSPDEY 451 500 ENSP00000223127/1-738 YARSEDYVEL VQRKRVGVWN VPYISQAYVI RGDTLRMELP QRDVFSGSDT ENSBTAP00000000447/1-751 YARSEDYVEL VQRKRVGVWN VPYISQAYVI RGETLRTELP QREVFSGSDT ENSTTRP00000004507/1-739 YARSEDYVEL VQRKRVGVWN VPYISQAYVI RGETLRTELP QREVFSGSDT bmy_12078T0/1-642 YARSEDYVEL VQRKRVGVWN VPYISQAYVI RGETLRTELP QREVFSGSDT BACU012055/1-739 YARSEDYVEL VQRKRVGVWN VPYISQAYVI RGETLRTELP QREVFSGSDT 501 550 ENSP00000223127/1-738 DPDMAFCKSF RDKGIFLHLS NQHEFGRLLA TSRYDTEHLH PDLWQIFDNP ENSBTAP00000000447/1-751 DPDMAFCKSL RDKGIFLHLS NQHEFGRLLA TSRYDTDHLH PDLWQIFDNP ENSTTRP00000004507/1-739 DPDMAFCKSL RDKGVFLHLS NQHEFGRLLA TSRYDTDHLH PDLWQIFDNP bmy_12078T0/1-642 DPDMAFCKSL RDKGIFLHLS NQHEFGRLLA TSRYDTDHLH PDLWQIFDNP BACU012055/1-739 DPDMAFCKSL RDKGIFLHLS NQHEFGRLLA TSRYDTDHLH PDLWQIFDNP 551 600 ENSP00000223127/1-738 VDWKEQYIHE NYSRALEGEG IVEQPCPDVY WFPLLSEQMC DELVAEMEHY ENSBTAP00000000447/1-751 LDWKEQYIHE NYTRALEGEG LVEQPCPDVY WFPLLSEQMC DELVEEMEHY ENSTTRP00000004507/1-739 LDWKEQYIHE NYSRALEGEG LVEQPCPDVY WFPLLSEQMC DELVEETEHY bmy_12078T0/1-642 LDWKEQYIHE NYSRALEGEG FVEQPCPDVY WFPLLSEQMC DELVEEMEHY BACU012055/1-739 LDWKEQYIHE NYSRALEGEG FVEQPCPDVY WFPLLSEQMC DELVEEMENY 601 650 ENSP00000223127/1-738 GQWSGGRHED SRLAGGYENV PTVDIHMKQV GYEDQWLQLL RTYVGPMTES ENSBTAP00000000447/1-751 GQWSGGRHED SRLAGGYENV PTVDIHMKQV GYEDQWLQLL RTYVGPMTES ENSTTRP00000004507/1-739 GQWSGGRHED SRLAGGYENV PTVDIHMKQV GYEDQWLQLL RTYVGPMTES bmy_12078T0/1-642 GQWSGGRHE- ---------- ---------V GYEDQWLQLL RTYVGPMTES BACU012055/1-739 GQWSGGRHED SRLAGGYENV PTVDIHMKQV GYEDQWLQLL RTYVGPMTES 651 700 ENSP00000223127/1-738 LFPGYHTKAR AVMNFVVRYR PDEQPSLRPH HDSSTFTLNV ALNHKGLDYE ENSBTAP00000000447/1-751 LFPGYHTKTR AVMNFVVRYR PDEQPSLRPH HDSSTFTLNV ALNHKGLDYE ENSTTRP00000004507/1-739 LFPGYHTKTR AVMNFVVRYR PDEQPSLRPH HDSSTFTLNV ALNHKGLDYE bmy_12078T0/1-642 LFPGYHTKTR AVMNFVVRYR PDEQPSLRPH HDSSTFTLNV ALNHKGLDYE BACU012055/1-739 LFPGYHTKTR AVMNFVVRYR PDEQPSLRPH HDSSTFTLNV ALNHKGLDYE 701 750 ENSP00000223127/1-738 GGGCRFLRYD CVISSPRKGW ALLHPGRLTH YHEGLPTTWG TRYIMVSFVD ENSBTAP00000000447/1-751 GGGCRFLRYD CVISSPRKGW GLLHPGRLTH YHEGLPTTRG TRYIMVSFVD ENSTTRP00000004507/1-739 GGGCRFLRYD CVVSSPRKGW GLLHPGRLTH YHEGLPTTRG TRYIMVSFVD bmy_12078T0/1-642 GGGCRFLRYD CVVSSPRKGW GLLHPGRLTH YHEGLPTTRG TRYIMVSFVD BACU012055/1-739 GGGCRFLRYD CVVSSPRKGW GLLHPGRLTH YHEGLPTTRG TRYIMVSFVD 751 800 ENSP00000223127/1-738 P ENSBTAP00000000447/1-751 P ENSTTRP00000004507/1-739 P bmy_12078T0/1-642 P BACU012055/1-739 P