KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:16 2014 Check: 00 .. Name: ENSP00000428054/1-1402 Len: 1422 Check: 4985 Weight: 1.00 Name: ENSBTAP00000000463/1-1408 Len: 1422 Check: 9389 Weight: 1.00 Name: bmy_11639T0/1-805 Len: 1422 Check: 7068 Weight: 1.00 Name: BACU005204/1-1022 Len: 1422 Check: 7569 Weight: 1.00 Name: ENSTTRP00000004560/1-1391 Len: 1422 Check: 8888 Weight: 1.00 // 1 50 ENSP00000428054/1-1402 MHQTLCLNPE SLKMSACSDF VEHIWKPGSC KNCFCLRSDH QLVAGPPQPR ENSBTAP00000000463/1-1408 MLETIPLNPE SPKMSACSDF VEHIWKPGSC KNCFCLRSDH QLVPGRPQPR bmy_11639T0/1-805 MHQTIPVNPE RPKMSACSDF VEHIWKPGSC KNCFCLRTDH QLAPGCPQPR BACU005204/1-1022 MHQTIPVNPE RPKMSACSDF VEHIWKPGSC KNCFCLRTDH QLAPGRPQPR ENSTTRP00000004560/1-1391 MHQTIPVNPE SPKMSACSDF VEHIWKPGSC KNCFCLRTDH QPAPGRPQPR 51 100 ENSP00000428054/1-1402 AGSLPPPPRL PPRPENCRLE DEGVNSSPYS KPTIAVKPTM MSSEASDVWT ENSBTAP00000000463/1-1408 VGCLPPPPRL HPRPESDRPE DDGLSGSPYS KPTIAVKPTM MSSEASDGWT bmy_11639T0/1-805 AGSLPPPPRL PPRPESGRPE DEGLSSSPYS KPTIAVKPTM MSSDASDGWT BACU005204/1-1022 AGSLPPPPRL PPRPESGRPE DEGLSSSPYS KPTIAVKPTM MSSEASDGWT ENSTTRP00000004560/1-1391 AGSLPPPPRL PPRPESGRPE DEGLSSSPYS KPTIAVKPTM MSSDASDGWT 101 150 ENSP00000428054/1-1402 EANLSAEVSQ VIWRRAPGKL PLPKQEDAPV VYLGSFRGVQ KPAGPSTSPD ENSBTAP00000000463/1-1408 EAGMSADVAQ VIWRRAPGKL PLPKQEDGPV VYLGSFRGVQ KPAGPSGPTD bmy_11639T0/1-805 EAGVSADVAQ VIWRRAPGKL PLPKQEDVPV VYLGSFRGVQ KPAGPLAPAD BACU005204/1-1022 EAGVSADVAQ VIWRRAPGKL PLPKQEDVPV VYLGSFRGVQ KPAGPLAPAD ENSTTRP00000004560/1-1391 EAGVSADVAQ VIWRRAPGKL PLPKQEDVPV VYLGSFRGVQ KPAGPLAPAD 151 200 ENSP00000428054/1-1402 -GNSRCPPAY TMVGLHNLEP RGERNIAFHP VSFPEEKAVH KEKPSFPYQD ENSBTAP00000000463/1-1408 GGHPRSPPAY AMVGLHSLEP RGDRSAAFHP VSFPDEKLGR DDKPVIPYQE bmy_11639T0/1-805 GGHPRCPPAY AMVGLHSLEP RGERSVAFHP VSFPDEKLGR EDKPTIPYQE BACU005204/1-1022 GGHPRCPPAY AMVGLHSLEP RGERSVAFHP VSFPDEKLGR EDKPTIPYQE ENSTTRP00000004560/1-1391 GGHPRCPPAY AMVGLHSLEP RGERSVAFHP VSLPDEKLGR EDKPTIPYQE 201 250 ENSP00000428054/1-1402 RPSTQESFRQ KLAAFAGTTS GCHQGPG--- ---PLRESLP SEDDSDQRCS ENSBTAP00000000463/1-1408 LNSPQESFRQ KLAAFSGMTS GCLKGLGPYP SAQPMRESLP SEDDSDQRCS bmy_11639T0/1-805 LTSPQESFRQ KLAAFAEMTS GCHKGPRPYP SAQPLRESLP SEDDSDQRCS BACU005204/1-1022 LTSPQESFRQ KLAAFAEMTS GCHKGPRPYP SALPLRESLP SEDDSDQRCS ENSTTRP00000004560/1-1391 LTSPQESFRQ KLAAFAEMTS GCHKGPR--- ---PLRESLP SEDDSDQRCS 251 300 ENSP00000428054/1-1402 PSGDSEGGEY CSILDCCPGS PVAKAASQTA GSRGRHGGRD CSPTCWEQGK ENSBTAP00000000463/1-1408 PSGDSEGGEY CSILDCCPGS PGAEDAARAG GSRHRQGGRD CSAACWEPRV bmy_11639T0/1-805 PSGDSEGGEY CSILDCCPGG PGGQDASQAE DPGRRQVCGD CSPACWEQGM BACU005204/1-1022 PSGDSEGGEY CSLLDCCPGG PGGQDASQAA DPGRRQGCGD CSPACWEQGM ENSTTRP00000004560/1-1391 PSGDSEGGEY CSILDCCPGS PGGQDASQAE DSGRRQGCGD CSPACWEQGM 301 350 ENSP00000428054/1-1402 CSGPAEQEKR GPSFPKECCS QGPTAHPSCL GPKKLSLTSE AAISSDGLSC ENSBTAP00000000463/1-1408 CARPPEEEKQ ALSFPRDCCS QGPTESPPRL GPKKQSLASE AASSSDGLSC bmy_11639T0/1-805 CAKPTEEERR ALSVPRECRS QGPTENPPRL GPKKQSLTSE AASSSDGLSC BACU005204/1-1022 CAKPTEEERW ALSVPRECRS QGPTENPPRL GPKKQSLTLE AASSSDGLSC ENSTTRP00000004560/1-1391 CSKPTEEERR ALSFPRECRS QGPTENPPRL GPKKQSLTSE AASSSDGLSC 351 400 ENSP00000428054/1-1402 GSGSGSGASS PFVPHLESDY CSLMKEPAPE KQQDPGCPGV TPSRCLGLTG ENSBTAP00000000463/1-1408 GSAN-SRASS PLAPHPESDY CSLRKEPGLG KQQDSGCHGV ASSRRLGQTG bmy_11639T0/1-805 GSAS-SRASS PLVPQHESDY CSLMKAPGPG KQQDSGCHGV ASSRCLGLTG BACU005204/1-1022 GSAS-SRASS PLVPQHESDY CSLMKAPGPG KPQDSGCHGV ASSRCLGLTG ENSTTRP00000004560/1-1391 GSAS-SRASS PLVPQHESDS CSLMKAPGPG KQQDSGCHGV ASSRCLGLTG 401 450 ENSP00000428054/1-1402 EPQPPAHPRE ATQPEPIYAE STKRKKAAPV PSKSQAKIEH AAAAQGQGQV ENSBTAP00000000463/1-1408 ETQPPAHSRE AAQSEPIYAE STKRKKAVPV PSRPQAKAEQ GAGAPGQAQV bmy_11639T0/1-805 EPHAPAHPGE TAQPEPIYAE STKRKKAVPV PSRPQAKAEQ AAAAEGQGQV BACU005204/1-1022 EPHAPAHPGE TAQPEPIYAE STKRKKAVPV PSRPQAKAEQ AAAAQGQGQV ENSTTRP00000004560/1-1391 EPQAPSHPGE TAQPEPIYAE STKRKKAVPV PSRPQAKAEQ AAAAQGQGQV 451 500 ENSP00000428054/1-1402 CTGNAWAQKA ASGWG--RDS PDPTPQVSAT ITVMAAHPEE DHRTIYLSSP ENSBTAP00000000463/1-1408 RTVNTWAQKA ASGWGQVREG PDAAPQMAAT ITVMAAHPEE DHRTIYLSSP bmy_11639T0/1-805 RMANTWAQKT ASGWGQDREG PEVAPQVAAT ITVMAAHPEE DHRTIYLSSP BACU005204/1-1022 RMANTWAQKT ASGWGQDREG PEVAPQVAAT ITVMAAHPEE DHRTIYLSSP ENSTTRP00000004560/1-1391 RMANTWAQKT TSGWGQDREG PEVAPQVAAT ITVMAAHPEE DHRTIYLSSP 501 550 ENSP00000428054/1-1402 DSAVGVQWPR GPVS-QNSEV GEEETSAGQG LSSRESHAHS ASESKPKERP ENSBTAP00000000463/1-1408 DSSVGVQWPR GPPSQQAPEA GGEEPSAGQG LGSRESRHRS ASETTAKGRP bmy_11639T0/1-805 DSSVGVQWPR GPLS-QAPEA GEGEPSAGQG LSSRESRHHG ASESTPKGRP BACU005204/1-1022 DSSVGVQWPR GPLS-QAPEA GEGEPSAGQG LSSRESRHHG ASESTPKGRP ENSTTRP00000004560/1-1391 DSSVGVQWPR GPLS-QAPEA GEGEPSAGQG LSSRESRHHG ASESTPKGRP 551 600 ENSP00000428054/1-1402 AIPPKLSKSS PVGSPVSPSA GGPPVSPLAD LSDGSSGGSS IGPQPPSQGP ENSBTAP00000000463/1-1408 AIPPKMSRSS PGGSPVSPSA -----YPLSD LSEGNSG--T PGPQPPSKGP bmy_11639T0/1-805 AIPPKLSKSS PGGSPVSPSA -----SPKSN LSEGNSG--V TGPQPPSRGP BACU005204/1-1022 AIPPKLSKSS PGGSPVSPSA -----SPKSN LSEGNSG--V TGPQPPSRGP ENSTTRP00000004560/1-1391 AIPPKLSKSS PAGSPVSP-- -----PPQPS LSEGNSG--V TGPQPPSRGP 601 650 ENSP00000428054/1-1402 ADPAPSCRTN GVAISDPSRC PQPA-ASSAS EQRRPRFQAG TWSRQCRIEE ENSBTAP00000000463/1-1408 ADPASSCRAN GIPSSDSARG PPPATSTSAL EQRRPRPQAG AWSRQCRIEE bmy_11639T0/1-805 ADPASSCRAN GVPASDSARG PPPATAASAL DQRRPRYQTG AWSRQCRIEE BACU005204/1-1022 ADPASSCRAN GVPASDSARG PPPATAASAL DQRRPRYQTG AWSRQCRIEE ENSTTRP00000004560/1-1391 ADPASSCRAN GVPASDSARG PPPATATSAS DQRRPRYQTG AWSRQCRIEE 651 700 ENSP00000428054/1-1402 EEEVEQELLS HSWGRETKNG PTDHSNSTTW HRLHPTDGSS GQNSKVGTGM ENSBTAP00000000463/1-1408 EDEVEQDLLS QSWGREVENG PLDPASSSAW HRLRPTDGSS GQNSKAGTGM bmy_11639T0/1-805 EEEVEQDLLS QSWGREADNG PADPCSSSTW HRLRPTDGSS GQKSKAGIGM BACU005204/1-1022 EEEVEQDLLS QSWGREADNG PADPCSSSTW HRLRPTDGSS GQKSKAGTGM ENSTTRP00000004560/1-1391 EEEVEQDLLS QSWGRGVDGG PMGPCSSSTW LRPRPTDGAS GPKSKAGTGM 701 750 ENSP00000428054/1-1402 SKSASFAFEF PKDRSGIETF SPPPPPPKSR HLLKMNKSSS DLEKVSQGSA ENSBTAP00000000463/1-1408 SKSASFAFEF PKDRSGIETF SPPPPPPKSR HLLKMNKSSS DLEKVSQGSA bmy_11639T0/1-805 SKSASFAFEF PKDKSGIEAF SPPPPPPKSR ----TEASSR DL-------- BACU005204/1-1022 SKSASFAFEF PKDKSGIEAF SPPPPPPKSR HLLKMNKSSS DLEKVSQGSA ENSTTRP00000004560/1-1391 SKSASFAFEF PKDKSGIEAF SPPPPPP-SR HLLKMNKSSS DLEKVSQGSA 751 800 ENSP00000428054/1-1402 ESLSPSFRGV HVSFTTGSTD SLASDSRTCS DGGPSSELAH SPTNSGKKLF ENSBTAP00000000463/1-1408 ESLSPSFRGV HVSFTTGSTD SLASDSRTCS DGGPSSEPAH SPTNSRKKLF bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ESLSPSFRGV HVSFTTGSTD SLASDSRTCS DGGPSSEPTH SPTSSGKELF ENSTTRP00000004560/1-1391 ESLSPSFRGV HVSFTTGSTD SLASDSRTCS DGGPSSELTH SPTSSGKELF 801 850 ENSP00000428054/1-1402 APVPFPSGST EDVSPSGPQQ PPPLPQKKIV SRAASSPDGF FWTQGSPKPG ENSBTAP00000000463/1-1408 APVPFPSGST EDVSPGDPLQ PPPLPQKKLV SRAASSPDGF FWTQGSPKPR bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 SPVPFPSGST EDVSPGGPLQ PPPLPQKKLV SRAASSPDGF FWTQGSPKPR ENSTTRP00000004560/1-1391 SPVPFPSGST EDVSPSGPLQ PPPLPQKKLV SRAASSPDGF FWTQGSPKPR 851 900 ENSP00000428054/1-1402 TASPKLNLSH SETNV--HDE SHFSYSLSPG NRHHPVFSSS DPLEKAFKGS ENSBTAP00000000463/1-1408 TASPKLNLSH SETNVCAHED SHFSYASGPG GRHQHVFSAS EPLEKTSKGS bmy_11639T0/1-805 ---------- ---GLCHLYR SHQAQAQSPN SRH------- ---------- BACU005204/1-1022 TAGPKLNLSH SETNVCVHDE SHFSYSSGPG SRHQHIFSAS EPLEKTFKDS ENSTTRP00000004560/1-1391 TAGPKLNLSH SETNVCVHDE SHFSYSSGPG SRLQHTFSAS EPLEKTFKDN 901 950 ENSP00000428054/1-1402 GHWLPAAGLA GNRGGCGSPG LQCKGAPSAS SSQLSVSSQA STGSTQLQLH ENSBTAP00000000463/1-1408 GHRGPVLGLG GSK------G LQGKGVSSAS SSQLSVSSQA SAGSTQLQLH bmy_11639T0/1-805 ---------- ---------- -QCRHKGPCA FVEISVTWCS AHKPTSSALL BACU005204/1-1022 GPWGPAPGLA GSQ------S LQGKGVSSAA ASQLSVSSQA STGSAQLQLH ENSTTRP00000004560/1-1391 GPWGPAPGLA GSQ------S LQGKGVSSAA ASQLSVSSQA SAGSAQLQLH 951 1000 ENSP00000428054/1-1402 GLLSNISSKE GTYAKLGGLY TQSLARLVAK CEDLFMGGQK KELHFNENNW ENSBTAP00000000463/1-1408 SLLNSISSKE GTYAKLGGLY AQSLVRLVAR CEDLFMGGQK KELHFSENNW bmy_11639T0/1-805 G----IGYSE GNFPR----- ---------- ---------- -----STAKL BACU005204/1-1022 SLLSSIGSKE GTYTKLGGLY AQSLVRLVAR CEDLFMGSQK KGLHFSENNW ENSTTRP00000004560/1-1391 SLLSSISSKE GTYTKLGGLY AQSLVRLVAR CEDLFMGGQK KGLHFSENNW 1001 1050 ENSP00000428054/1-1402 SLFKLTCNKP CCDSGDAIYY CATCSEDPGS TYAVKICKAP EPKTVSYCSP ENSBTAP00000000463/1-1408 SLFKLTCNKP CCDSGDAIYY CATCSEDPGS TYAVKICKTP EPKAASYCSP bmy_11639T0/1-805 SLF------- ---------- -------PGA ---------- ---------- BACU005204/1-1022 SLFKLACNKP CCDSGDAIYY CATCSEDPGS TYAVK----- ---------- ENSTTRP00000004560/1-1391 SLFKLACNKP CCDSGDAIYY CATCSEDPGS TYAVKICKTP EPKAASYCSP 1051 1100 ENSP00000428054/1-1402 SVPVHFNIQQ DCGHFVASVP SSMLSSPDAP KDPVPALPTH PPAQEQDCVV ENSBTAP00000000463/1-1408 SVPVHFNIQQ DCGHFVASVP SSMLTSPDAH KDPLSALPSH PPAQEQDCVV bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 SVPVHFNIQQ DCGHFVASVP SSMLTSPDAP KDLLSALPSH PPAQEQDCVV 1101 1150 ENSP00000428054/1-1402 VITREVPHQT ASDFVRDSAA SHQAEPEAYE RRVCFLLLQL CNGLEHLKEH ENSBTAP00000000463/1-1408 VITREVPHQT ASDFVRDLAA SHQSEPEVYE RRVCFLLLQL CNGLEHLKEH bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 VITREVPHQT ASDFVQDSAT SHQSEPEVYE RRVCFLLLQL CNGLEHLKEH 1151 1200 ENSP00000428054/1-1402 GIIHRDLCLE NLLLVHCTLQ AGPGPAPAP- ------APAP AAAAPPCSSA ENSBTAP00000000463/1-1408 GIIHRDLCLE NLLLVHCAPQ ASPEPSTAAS LPPTTTSPAP AATPSSGPSA bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 GIIHRDLCLE NLLLVHCAPQ ASPDPSSAL- ------APAP AATPSSCPSA 1201 1250 ENSP00000428054/1-1402 APPAGGTLSP AAGPASPEGP REKQLPRLII SNFLKAKQKP GGTPNLQQKK ENSBTAP00000000463/1-1408 TVPTSVNPTP PAAPAFQGGS SEKHLPRLII SNFLKAKQKP GGTTNLQQKK bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 ALPAGVTPTP PAGPACQGGP GEKHLPRLII SNFLKAKQKP GGSTNLQQKK 1251 1300 ENSP00000428054/1-1402 SQARLAPEIV SASQYRKFDE FQTGILIYEL LHQPNPFEVR AQLRERDYRQ ENSBTAP00000000463/1-1408 SQARLAPEIV SASQYRKFDE FQTGILIYEL LHQPNPFEVR AQLREQDYRQ bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 SQARLAPEIV SASQYRKFDE FQTGILIYEL LHQPNPFEVR AQLREQDYRQ 1301 1350 ENSP00000428054/1-1402 EDLPPLPALS LYSPGLQQLA HLLLEADPIK RIRIGEAKRV LQCLLWGPRR ENSBTAP00000000463/1-1408 EDLPPLPALS LYSPGLQRLA HLLLEADPIK RIRIGEAKRV LQCLLWGPRR bmy_11639T0/1-805 ---------- ---------- ---------- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 EDLPPLPALS LYSPGLQRLA HLLLQADPIK RIRIGEAKRV LQCLLWGPRR 1351 1400 ENSP00000428054/1-1402 ELVQQPGTSE EALCGTLHNW IDMKRALMMM KFAEKAVDRR RGVELEDWLC ENSBTAP00000000463/1-1408 ELVEPPGASE EVLCTTLHNW IDMKRALMMM KFAEKAVDRR RGVELEDWLC bmy_11639T0/1-805 ---------- ---------- ----RPLII- ---------- ---------- BACU005204/1-1022 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004560/1-1391 ELVEQPGTSE EALCATLSNW IDMKRALMMM KFAEKAVDRR RGVELEDWLC 1401 1450 ENSP00000428054/1-1402 CQYLASAEPG ALLQSLKLLQ LL ENSBTAP00000000463/1-1408 CQYLASAEPT ALLQSLKLLQ LL bmy_11639T0/1-805 ---------- ---------- -- BACU005204/1-1022 ---------- ---------- LL ENSTTRP00000004560/1-1391 CQYLASAEPG ALLQSLKLLQ LL