KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:26 2014 Check: 00 .. Name: ENSTTRP00000009656/1-965 Len: 1065 Check: 8203 Weight: 1.00 Name: ENSP00000321711/1-1054 Len: 1065 Check: 7005 Weight: 1.00 Name: ENSBTAP00000000481/1-1053 Len: 1065 Check: 7935 Weight: 1.00 Name: bmy_10383T0/1-965 Len: 1065 Check: 6594 Weight: 1.00 Name: BACU001074/1-1028 Len: 1065 Check: 4232 Weight: 1.00 // 1 50 ENSTTRP00000009656/1-965 ---------- ---------- ---------- ---------- ---------- ENSP00000321711/1-1054 MLQKREKVLL LRTFQGRTLR IVREHYLRPC VPCHSPLCPQ PAACSHDGKL ENSBTAP00000000481/1-1053 MLQKREKVLL LRTFHGRTLR IVREHYLRPS VPCNSPLCPQ PATCHNDGKL bmy_10383T0/1-965 MLQKREKVLL LRTFQGRTLR IVREHYLRPS VPCNSPLCPQ PAVCRNDGKL BACU001074/1-1028 MLQKREKVLL LRTFQGRTLR IVREHYLRPS VPCNSPLCPQ PAVCRNDGKL 51 100 ENSTTRP00000009656/1-965 ---------- ---------- ---------- ---MQTACQA VQHQRGRRQY ENSP00000321711/1-1054 LSSDVTHYVI PDWKVVQDYL EILEFPELKG IIFMQTACQA VQHQRGRRQY ENSBTAP00000000481/1-1053 LSSDVTHYMV PDWKVVQDYL EILEFPELKG IVFMQTACQA VQHQRGRRQY bmy_10383T0/1-965 LSSDVTHYMI PDWKVVQDYL EILEFPELKG MIFMQTACQA VQHQRGRRQY BACU001074/1-1028 LSSDVTHYMI PDWKVVQDYL EILEFPELKG IIFMQTACQA VQHQRGRRQY 101 150 ENSTTRP00000009656/1-965 NKLRNLLKDA RHDCVLFANE FQQSCYLPRE RGESMEKWQS XXXXXXXXXX ENSP00000321711/1-1054 NKLRNLLKDA RHDCILFANE FQQCCYLPRE RGESMEKWQT RSIYNAAVWY ENSBTAP00000000481/1-1053 NKLRNLLKDA RHDCVLFANE FQQSCYLPRE RGESMEKWQS RSIYNAAAWY bmy_10383T0/1-965 NKLRNLLKDA RHDCVLFANE FQQSCYLPRE RGESMEKWQS RSIYNAATWY BACU001074/1-1028 NKLRNLLKDA RHDCVLFANE FQQSCYLPRE RGESMEKWQS RSIYNAATWY 151 200 ENSTTRP00000009656/1-965 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000321711/1-1054 YHHCQDRMPI VMVTEDEEAI QQYGSETEGV FVITFKNYLD NFWPDLKAAH ENSBTAP00000000481/1-1053 YHHCQDRMPI VMVTEDEEAI QQYGSETGGV FVISFKNYLD NFWPDLKAAH bmy_10383T0/1-965 YHHCQDRMPI VM-------- ---------- ------SYLD NFWPDLKAAH BACU001074/1-1028 YHHCQDRMPI VMVTEDEEAI QQYGSETEGV FVISFKSYLD NFWPDLKAAH 201 250 ENSTTRP00000009656/1-965 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXGSLNV ENSP00000321711/1-1054 ELCDSILQSR RERENESQES HGKEYPEHLP LEVLEAGIKS GRYIQGILNV ENSBTAP00000000481/1-1053 ELCESILQSR RERENESQES HGKEYPEHVP LEVLEAGIKS GRYIQGTLNV bmy_10383T0/1-965 ELCESILQSR RERENESQES HGKEYPEHLP LEVLEAGIKS GRYIQGTLNV BACU001074/1-1028 ELCESILQSR RERENESQES HGKEYPEHLP LEVLEAGIKS GRYIQGTLSV 251 300 ENSTTRP00000009656/1-965 NKHRAQIEAF VRLQGASSKD SGLVSDILIH GTKARNRSIH GDVVVVELLP ENSP00000321711/1-1054 NKHRAQIEAF VRLQGASSKD SDLVSDILIH GMKARNRSIH GDVVVVELLP ENSBTAP00000000481/1-1053 NKHRAQIEAF VRLQGASSKD SDLVSDVLIH GMKARNRSIH GDVVVVELLP bmy_10383T0/1-965 NKHRAQIEAF VRLQGASSKD S--------- ---------- ---------- BACU001074/1-1028 NKHRAQIEAF VRLQGASSKD SGLVSDILIH GMKARNRSIH GDVVVVELLP 301 350 ENSTTRP00000009656/1-965 KNEWKGRTTA LGEND----- -GESPSEPMP TGRVVGILQK NWRDYVVTFP ENSP00000321711/1-1054 KNEWKGRTVA LCENDCDDKA SGESPSEPMP TGRVVGILQK NWRDYVVTFP ENSBTAP00000000481/1-1053 KSEWKGRTTA LGENDGDDKA LGESPSEPMP TGRVVGILQK NWRDYVVTFP bmy_10383T0/1-965 ---------- ---------- ---------- -GRVVGILQK NWRDYVVTFP BACU001074/1-1028 KNEWKGRTTA LGEND----- -GEFPSEPMP TGRVVGILQK NWRDYVVTFP 351 400 ENSTTRP00000009656/1-965 SKEEVQSQGK NARKILVTPW DYRIPKIRIS TQQAEALQXX XXXXXXXXXX ENSP00000321711/1-1054 SKEEVQSQGK NAQKILVTPW DYRIPKIRIS TQQAETLQDF RVVVRIDSWE ENSBTAP00000000481/1-1053 SIEEVQSQGK NAQKILVTPW DYRIPKIRIS TQQAEALQDF RVVVRIDSWE bmy_10383T0/1-965 SKEEVQSQGK NARKILVIPW DYRIPKIRIS TQQAEALQDF RVVVRIDSWE BACU001074/1-1028 SKEEVQSQGK NARKILVIPW DYRIPKIRIS TQQAEALQDF RVVVRIDSWE 401 450 ENSTTRP00000009656/1-965 XXXXXXXXXX XXXXXXXXDL EGEIATILVE NSISVVPFSE AQMCEMPVNT ENSP00000321711/1-1054 STSVYPNGHF VRVLGRIGDL EGEIATILVE NSISVIPFSE AQMCEMPVNT ENSBTAP00000000481/1-1053 STSMYPNGHF VRVLGRIGDL EGEIATILVE NSISVVPFSE AQMCEMPVNT bmy_10383T0/1-965 STSMYPSGHF VRVLGRIGDL EGEIATILVE NSISVVPFSE AQMCEMPVNT BACU001074/1-1028 STSMYPSGHF VRVLGRIGDL EGEIATILVE NSISVVPFSE AQMCEMPVNT 451 500 ENSTTRP00000009656/1-965 AENPWKVSSE EERERKDLRK THLVFSIDPR GCEDVDDTLS VRALDNGNLE ENSP00000321711/1-1054 PESPWKVSPE EEQKRKDLRK SHLVFSIDPK GCEDVDDTLS VRTLNNGNLE ENSBTAP00000000481/1-1053 PENPWKVSSQ EEREREDLRK THLVFSIDPS GCEDVDDTLS VRALDNGNLE bmy_10383T0/1-965 TENPWKVSSE EERERKDLRK THLVFSIDPR GCEDVDDTLS VRALDNGNLE BACU001074/1-1028 TENPWKVSSE EERERKDLRK THLVFSIDPR GCEDVDDAFS VRALDNGNLE 501 550 ENSTTRP00000009656/1-965 LGVHIADVTH FVTSHSYIDI EARTRATTYY LADRRYDMLP SILSADVCSL ENSP00000321711/1-1054 LGVHIADVTH FVAPNSYIDI EARTRATTYY LADRRYDMLP SVLSADLCSL ENSBTAP00000000481/1-1053 LGVHIADVTH FVAPHSYIDI EARTRATTYY LADRRYDMLP AILSADVCSL bmy_10383T0/1-965 LGVHIADVTH FVASHSYIDI EARTRATTYY LADRRYDMLP SILSADVCSL BACU001074/1-1028 LGVHIADVTH FVASHSYIDI EARTRATTYY LADRRYDMLP SILSADVCSL 551 600 ENSTTRP00000009656/1-965 LGGVDRYAVS IMWELDKTSY DIKKVWYGRT IIRSAYKLFY EAAQELLDGN ENSP00000321711/1-1054 LGGVDRYAVS IMWELDKASY EIKKVWYGRT IIRSAYKLFY EAAQELLDGN ENSBTAP00000000481/1-1053 LGGVDRYAVS VMWELDKTSY EIKKVWYGRT IIRSAYKLFY EAAQDLLDGN bmy_10383T0/1-965 LGGVDRYAXS IMWELDKTSY EIKKVWYGRT IIRSAYKLFY EAAQELLDGN BACU001074/1-1028 LGGVDRYAVS IMWELDKTSY EIKEVWYSRT IIRSAYKLFY EAAQKLLDGN 601 650 ENSTTRP00000009656/1-965 IDIVDDIPEF RDMDEKSRQA KLEELLWAIG KLTDIARHIR AKRDRCGALG ENSP00000321711/1-1054 LSVVDDIPEF KDLDEKSRQA KLEELVWAIG KLTDIARHVR AKRDGCGALE ENSBTAP00000000481/1-1053 FSVVKDIPEF KDLDEKSRQA KLEELVWAIR KLTDIARHIR AKRDSCGALE bmy_10383T0/1-965 VDIVDDIPEF RDLDEKSRQA KLEELLWAIR KLTDIARHVR AKRDQCGALE BACU001074/1-1028 VDIVDDIPEF RDLDEKSRQA KLEELLWAIR KLTDIARHIR AKRYQCGALE 651 700 ENSTTRP00000009656/1-965 LEGVEVRIQL DEKKNIHDLI PKQPLEVHET VAECMILANH WVAKKIYESF ENSP00000321711/1-1054 LEGVEVCVQL DDKKNIHDLI PKQPLEVHET VAECMILANH WVAKKIWESF ENSBTAP00000000481/1-1053 LEGVEVRIQL DEKKNIHDLI PKQPLEVHET VAECMILANH WVAKKIWESF bmy_10383T0/1-965 LEGVEVRIQL DEKKNIHDLI PKQPLEVHET VAECMILANH WVAKKIWESF BACU001074/1-1028 LEGVEVRIQL DEKKNIHDLI PKQPLEVHET VAECMILANH WVAKKIWESF 701 750 ENSTTRP00000009656/1-965 PRQALLRRHP PPHQEFFSEL RECAKAKGFF IDTRSNKALA DSLDNANDPN ENSP00000321711/1-1054 PHQALLRQHP PPHQEFFSEL RECAKAKGFF IDTRSNKTLA DSLDNANDPH ENSBTAP00000000481/1-1053 PHQALLRRHP PPHQEFFSEL RECAKAKGFF IDTRSNKALA DSLDNANDPN bmy_10383T0/1-965 PHQALLRRHP PPHQEFFSEL RECAKAKGFF IDTRSNKALA DSLDNANDPN BACU001074/1-1028 PHQALLRRHP PPHQEFFSEL RECAKAKGFF IDTRSNKALA DSLDNANDPN 751 800 ENSTTRP00000009656/1-965 DPIVNWLLRS MATQAMSNAL YFSTGSCAEE EFHHYGLALD KYTHFTSPIR ENSP00000321711/1-1054 DPIVNRLLRS MATQAMSNAL YFSTGSCAEE EFHHYGLALD KYTHFTSPIR ENSBTAP00000000481/1-1053 DPIVNKLLRS MATQAMSNAL YFSTGSCAEE EFHHYGLALD KYTHFTSPIR bmy_10383T0/1-965 DPIVNWLLRS MATQAMSNAL YFSTGSCAEE EFHHYGLALD KYTHFTSPIR BACU001074/1-1028 DPIVNWLLRS MATQAMSNAL YFSTGSCAEE EFHHYGLALD KYTHFTSPIR 801 850 ENSTTRP00000009656/1-965 RYSDIIVHRL LMAAISKDKK MEIKENLFSN KDLEELCRHI NNRNRAAQHS ENSP00000321711/1-1054 RYSDIVVHRL LMAAISKDKK MEIKGNLFSN KDLEELCRHI NNRNQAAQHS ENSBTAP00000000481/1-1053 RYSDIIVHRL LMAAISKDKK MEIQENLFSN KDLEELCRHI NNRNRAAQHS bmy_10383T0/1-965 RYSDIIVHRL LMAAISKDKK MEIKEDLFSN KDLEELCRHI NSRNRTKTQK BACU001074/1-1028 RYSDIIVHRL LMAAISKDKK MEIKEDLFSN KDLEELCRHI NNRNRAAQHS 851 900 ENSTTRP00000009656/1-965 QKQSTELFQC MYFKDKDPET EERCIADGVI YSIRTNGVLV FIPRFGIKGA ENSP00000321711/1-1054 QKQSTELFQC MYFKDKDPAT EERCISDGVI YSIRTNGVLL FIPRFGIKGA ENSBTAP00000000481/1-1053 QKQSTELFQC MYFKDKDPET EERCISDGVI YSIRTNGVLV FIPRFGIKGA bmy_10383T0/1-965 LRSVAYLMGL -FIQLG--QT VCLCLYQ-VV FNL------- ----FGIKGA BACU001074/1-1028 QKQSTELFQC MYFKDKDPET EERCISDGVI ---------- ---------- 901 950 ENSTTRP00000009656/1-965 AYLKNKDGLV ISC-SPDGHS EWKPGSLQRF QNKITSTTTG GESVTFHLFD ENSP00000321711/1-1054 AYLKNKDGLV ISC-GPDSCS EWKPGSLQRF QNKITSTTTD GESVTFHLFD ENSBTAP00000000481/1-1053 AYLRNKDGLV VSC-GPDGHS EWKPGSLQRF QNKITSTTTG GESVTFHLFD bmy_10383T0/1-965 AYLKNKDGLV ISC-SPDGHS EWKPGSLQRF QNKITSTTTG GESVTFHLFD BACU001074/1-1028 -YSIRTNGVL VFIPSPDGHS EWKPGSLQRF QNKITSTTTG GESVTFHLFD 951 1000 ENSTTRP00000009656/1-965 ---------- HVTVRISVQA SRCHSDTIRL EIISNKPYMM PDTELFQQSS ENSP00000321711/1-1054 ---------- HVTVRISIQA SRCHSDTIRL EIISNKPYKI PNTELIHQSS ENSBTAP00000000481/1-1053 ---------- HVTVRISVQT SRCHSDTIRL EIISNKPHMT PDTELLQQCS bmy_10383T0/1-965 HVTVSLYLYY HVTVRISVQA SRCHSDTIRL EIISNKPYMM XDTELFQQSS BACU001074/1-1028 ---------- HVTVRLSVQA SRCHSDTIRL EIISNKPYMM PDTELFQQSS 1001 1050 ENSTTRP00000009656/1-965 LLLKSDLVKE VTRSMEEAQL AQEVKVNVIE KDYQKYCQTK GRSLYTLLEE ENSP00000321711/1-1054 PLLKSELVKE VTKSVEEAQL AQEVKVNIIQ EEYQEYRQTK GRSLYTLLEE ENSBTAP00000000481/1-1053 LLLKSDLVKE VTRSVEEAQL AQEVAVNITE -DYQKYCQTK GRSLYTLLEE bmy_10383T0/1-965 LLLKSDLVKE VTRSVEEAQL AQEVKVNVIE KDYQKYCQTK GRSLYTLLEE BACU001074/1-1028 LLLKSDLVKE VTRSVEEAQL AQEVKVNVIE KDYQKYCQTK GRSLYTLLEE 1051 1100 ENSTTRP00000009656/1-965 IRDLALLDVS NSYGI ENSP00000321711/1-1054 IRDLALLDVS NNYGI ENSBTAP00000000481/1-1053 IRDLALLDVS NSYGI bmy_10383T0/1-965 IRDLALLDVS NSYGI BACU001074/1-1028 IRDLALLDVS NSYGI