KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:28 2014 Check: 00 .. Name: bmy_01273T0/1-517 Len: 823 Check: 6876 Weight: 1.00 Name: ENSTTRP00000003362/1-672 Len: 823 Check: 7308 Weight: 1.00 Name: BACU005291/1-663 Len: 823 Check: 1260 Weight: 1.00 Name: ENSP00000350224/1-675 Len: 823 Check: 2437 Weight: 1.00 Name: ENSBTAP00000000488/1-654 Len: 823 Check: 3554 Weight: 1.00 // 1 50 bmy_01273T0/1-517 MLLRTRAPTP SDCSRLSSER DDNMDTESIL EELLLKRSQQ KKKMSPNNYK ENSTTRP00000003362/1-672 ---------- ---------- ---MNTESIL EELLLKRSQQ KKKMSPNNYK BACU005291/1-663 ---------- ---------- ---MDTESIL EELLLKRSQQ KKKMSPNNYK ENSP00000350224/1-675 ---------- ---------- ---MDTKSIL EELLLKRSQQ KKKMSPNNYK ENSBTAP00000000488/1-654 ---------- ---------- ---MDTKSIL EELLLKRSQQ KKKMSPNNYK 51 100 bmy_01273T0/1-517 ERLFVLTKTN LSYYEYDKMK RGSRKGSIEI KKIRCVEKVN LEEQTPVERQ ENSTTRP00000003362/1-672 ERLFVLTKTN LSYYEYDKMK RGSRKGSIEI KKIRCVEKVN LEEQTPVERQ BACU005291/1-663 ERLFVLTKTN LSYYEYDKMK RGSRKGSIEI KKIRCVEKVN LEEQTPVERQ ENSP00000350224/1-675 ERLFVLTKTN LSYYEYDKMK RGSRKGSIEI KKIRCVEKVN LEEQTPVERQ ENSBTAP00000000488/1-654 ERLFVLTKTN LSYYEYDKMK RGSRKGSIEI KKIRCVEKVN LEEQTPVERQ 101 150 bmy_01273T0/1-517 YPFQIVYKDG LLYVYASNEE SRSQWLKALQ KEIRGNPHLL IKYHSGFFVY ENSTTRP00000003362/1-672 YPFQIVYKDG LLYVYASNEE SRSQWLKALQ KEIRGNPHLL IKYHSGFFAY BACU005291/1-663 YPFQIVYKDG LLYVYASNEE SRSQWLKALQ KEIRGNPHLL IKYHSGFFVY ENSP00000350224/1-675 YPFQIVYKDG LLYVYASNEE SRSQWLKALQ KEIRGNPHLL VKYHSGFFVD ENSBTAP00000000488/1-654 YPFQIVYKDG LLYVYASNEE SRSQWLKALQ KEIRGNPHLL IKYHSGFFVD 151 200 bmy_01273T0/1-517 GKFLCCQQSC KAAPGCTLWE ACNVTPLLGW TLGGRCPLGK PGKCQNSSPV ENSTTRP00000003362/1-672 GKFLCCQQSC KAAPGCTLWE AY-------- ---------- ---------- BACU005291/1-663 GKFLCCQQSC KAAPGCTLWE ACNVTPLSGW TLGGRGPLGK PGKCQNSSPV ENSP00000350224/1-675 GKFLCCQQSC KAAPGCTLWE AY-------- ---------- ---------- ENSBTAP00000000488/1-654 GKFLCCQQSC KAAPGCTLWE AY-------- ---------- ---------- 201 250 bmy_01273T0/1-517 QENKMCQIDA DLHIEPKEEK HRVPIFPDRV LKIPRAVPIL KMDEPSSSTA ENSTTRP00000003362/1-672 ---------A DLHIEPKEEK HRVPIFPDRV LTVPQAVPVL KMDETSSNTA BACU005291/1-663 QENKMCQIDA DLHIEPKEEK HRLPIFPDRV MKIPRAVPIL KMDEPSSSTA ENSP00000350224/1-675 ---------A NLHTAVNEEK HRVPTFPDRV LKIPRAVPVL KMDAPSSSTT ENSBTAP00000000488/1-654 ---------A DLHTAPKEEK HGVPIFPDRV LKIPRAVPIL KVDEPSSSTT 251 300 bmy_01273T0/1-517 LAQYDSDSKK N--------- ---------- ---CGSQSNV NMWYMPREDC ENSTTRP00000003362/1-672 LAQQDSDSEK N--------- ---------- ---CGFXXXX XXXXXXXXXX BACU005291/1-663 LAQYDSDSKK N--------- ---------- ---CGSQSNV NMWYVPREDC ENSP00000350224/1-675 LAQYDNESKK NYGSQPPSSS TSLAQYDSNS KKIYGSQPNF NMQYIPREDF ENSBTAP00000000488/1-654 LAQYDSDSKK N--------- ---------- ---YGSQSNI NMKYISKEDF 301 350 bmy_01273T0/1-517 PDW------- ---------- --WQVRRLKR ---------- ---------- ENSTTRP00000003362/1-672 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSSEELACS NQRERNAVDH BACU005291/1-663 PDW------- ---------- --WQVRRLKR ---------- ---------- ENSP00000350224/1-675 PDW------- ---------- --WQVRKLKS SSSSEDVASS NQKERN-VNH ENSBTAP00000000488/1-654 PDW------- ---------- --WQVRKLHS ASSSEDLACS NQRERNVVNH 351 400 bmy_01273T0/1-517 -------GSP ESSSSEEEEN LDDYDWFAGN ISRSQSEQLL RQKGKEGAFM ENSTTRP00000003362/1-672 GTLKMSWGSP ESSSSEEEEN LDDYDWFAGN ISRSQSEQLL RQKGKEGAFM BACU005291/1-663 -------GSP ESSSSEEEEN LDDYDWFAGN ISRSQSEQLL RQKGKEGAFM ENSP00000350224/1-675 TTSKISWEFP ESSSSEEEEN LDDYDWFAGN ISRSQSEQLL RQKGKEGAFM ENSBTAP00000000488/1-654 NTSKMSWGSP ESSSSEEEEN LDDYDWFAGN ISRSQSEQLL RQKGKEGAFM 401 450 bmy_01273T0/1-517 VRNSSQAGMY TVSLFSKAMN DKKGTVKHYH VHTNAENKLY LAENYCFDSI ENSTTRP00000003362/1-672 VRNSSQPGMY TVSLFSKAMN DKKGTVKHYH VHTNAENKLY LAENYCFDSI BACU005291/1-663 VRNSSQAGMY TVSLFSKAMK ---------- ---------- ---------- ENSP00000350224/1-675 VRNSSQVGMY TVSLFSKAVN DKKGTVKHYH VHTNAENKLY LAENYCFDSI ENSBTAP00000000488/1-654 VRNSSQAGMY TVSLFSKAMN DKKGTVKHYH VHTNAENKLY LAENYCFDSI 451 500 bmy_01273T0/1-517 PKLIHYHQHN SAGMITRLRH PVSTKANKVP ISVSLGSG-- ---------- ENSTTRP00000003362/1-672 PKLIHYHQHN SAGMITRLRH -VSTKANKVP ISVSLGSGIW ELKREEIMLL BACU005291/1-663 ---------- ---------- ---------- --------IW ELKREEITLL ENSP00000350224/1-675 PKLIHYHQHN SAGMITRLRH PVSTKANKVP DSVSLGNGIW ELKREEITLL ENSBTAP00000000488/1-654 PKLIHYHQHN SAGMITRLRH PVSTKANKVP ISVSLGSGIW ELKREEITLL 501 550 bmy_01273T0/1-517 -----DSWSL LLLG------ ---------- ---------- ---------- ENSTTRP00000003362/1-672 KELGSGQFGV VHLGKWKGQY DVAVKMIKEG SMSEDEFFQE AQTMMKLNHP BACU005291/1-663 KELGSGQFGV VHLGKWKGQY DVAVKMIKEG SMSEDEFFQE AQTMMKLNHP ENSP00000350224/1-675 KELGSGQFGV VQLGKWKGQY DVAVKMIKEG SMSEDEFFQE AQTMMKLSHP ENSBTAP00000000488/1-654 KELGSGQFGV VHLGKWKGKY DVAVKMIKEG SMSEDEFFQE AQTMTKLNHP 551 600 bmy_01273T0/1-517 ---------N SAFPL----- ---------- ---------- ---------- ENSTTRP00000003362/1-672 KLVKFYGVCS KRYPIYIVTE YITNGCLLSY LKSHGKRLEP SQLLEMCYDV BACU005291/1-663 KLVKFYGVCS KRYPIYIMTE YITNGCLLSY LKSHGKRLEP SQLLEMCYDV ENSP00000350224/1-675 KLVKFYGVCS KEYPIYIVTE YISNGCLLNY LRSHGKGLEP SQLLEMCYDV ENSBTAP00000000488/1-654 KLVKFYGVCS KRYPIYIVTE YITNGCLLSY LKSHGKRLEP SQLLEMCYDV 601 650 bmy_01273T0/1-517 ---------- ------KAAR NCLVDSDLSV KVSDFGMTSF ---QKSVPHF ENSTTRP00000003362/1-672 CEGMAFLESH QFIHRDLAAR NCLVDSDLSV KVSDFGMTRY VLDDQYVSSV BACU005291/1-663 CEGMAFLESH QFIHRDLAAR NCLVDSDLSV KVSDFEMTRY VLDDQYVSSV ENSP00000350224/1-675 CEGMAFLESH QFIHRDLAAR NCLVDRDLCV KVSDFGMTRY VLDDQYVSSV ENSBTAP00000000488/1-654 CEGMAFLESH QFIHRDLAAR NCLVDSDLSV KVSDFGMTRY VLDDQYVSSV 651 700 bmy_01273T0/1-517 SNSYLPLN-- ---------- ---------- -------HFG KKT-KLEEEM ENSTTRP00000003362/1-672 GTKF-PVKWS APEVFHYFKY SSKSDVWAFG ILMWEVFSLG KQPYDLYDNS BACU005291/1-663 GTKF-PVKWS APEVFHYFKY SSKSDVWAFG ILMWEVFSLG KQPYDLYDNS ENSP00000350224/1-675 GTKF-PVKWS APEVFHYFKY SSKSDVWAFG ILMWEVFSLG KQPYDLYDNS ENSBTAP00000000488/1-654 GTKF-PVKWS APEVFHYFKY SSKSDVWAFG ILMWEVFSLG KQPYDLYDNS 701 750 bmy_01273T0/1-517 R-----SSDE KMNKPIAEA- ---HLLIDC- ---------- ---------- ENSTTRP00000003362/1-672 QVVMKVSQGH RLYRPQLAWD TVYQVMHSCW HELPE----- ---------- BACU005291/1-663 QVVVKVSQGH RLYRPQLASD TVYEVMYRCW HEASAPLGGG GRAPAHPGHW ENSP00000350224/1-675 QVVLKVSQGH RLYRPHLASD TIYQIMYSCW HELPE----- ---------- ENSBTAP00000000488/1-654 QVVVKVSQGH RLYRPQLASD TVYHIMYSCW HELPE----- ---------- 751 800 bmy_01273T0/1-517 ---------- ---------- ---------- ---------- ---------K ENSTTRP00000003362/1-672 ---------- ---------- ---------- ---------K RPTFQQLLSS BACU005291/1-663 LRHHRKKRFW GGRGGGGGAP ATEQVEMALG PCPQVLVIRN QHCRRQQLNN ENSP00000350224/1-675 ---------- ---------- ---------- ---------K RPTFQQLLSS ENSBTAP00000000488/1-654 ---------- ---------- ---------- ---------K RPTFQQLLSS 801 850 bmy_01273T0/1-517 IERVCTMCKD ---------- --- ENSTTRP00000003362/1-672 IEPLREKDKP ---------- --- BACU005291/1-663 LYQQCSKDFT NINSFIQQET HYE ENSP00000350224/1-675 IEPLREKDKH ---------- --- ENSBTAP00000000488/1-654 IEPLREKDKP ---------- ---