KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:29 2014 Check: 00 .. Name: bmy_05366T0/1-461 Len: 482 Check: 947 Weight: 1.00 Name: ENSTTRP00000008749/1-311 Len: 482 Check: 39 Weight: 1.00 Name: ENSP00000292035/1-311 Len: 482 Check: 5094 Weight: 1.00 Name: BACU016197/1-311 Len: 482 Check: 4773 Weight: 1.00 Name: ENSBTAP00000000493/1-311 Len: 482 Check: 4779 Weight: 1.00 // 1 50 bmy_05366T0/1-461 MADVLSVGVN LEAFAQAISA IQALRSSVSR VFDCLKDGMR NKETLEGREK ENSTTRP00000008749/1-311 MADVLSVGVN LEAFAQAISA IQALRSSVSR VFDCLKDGMR NKETLEGREK ENSP00000292035/1-311 MADVINVSVN LEAFSQAISA IQALRSSVSR VFDCLKDGMR NKETLEGREK BACU016197/1-311 MADVLSVGVN LEAFAQAISA IQALRSSVSR VFDCLKDGMR NKETLEGREK ENSBTAP00000000493/1-311 MADVLSVGVN LEAFAQAISA IQALRSSVSR VFDCLKDGMR NKETLEGREK 51 100 bmy_05366T0/1-461 AFIAHFQDNL HSVNRDLNEL ERLSNLVGKP SENHPLHNSG LLSLDPVQDK ENSTTRP00000008749/1-311 AFIAHFQDNL HSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000292035/1-311 AFIAHFQDNL HSVNRDLNEL ERLSNLVGKP SENHPLHNSG LLSLDPVQDK BACU016197/1-311 AFIAHFQDNL HSVNRDLNEL ERLSNLVGKP SENHPLHNSG LLSLDPVQDK ENSBTAP00000000493/1-311 AFIAHFQDNL HSVNRDLNEL ERLSNLVGKP SENHPLHNSG LLSLDPVQDK 101 150 bmy_05366T0/1-461 TPLYSQLLQA YKWSNKVLSD RWVHSVEQDS FMALAFTSPQ LTCLGRFVAE ENSTTRP00000008749/1-311 XXXXXXXXXX XXXXXX---- ---------- ---------- ---------- ENSP00000292035/1-311 TPLYSQLLQA YKWSNK---- ---------- ---------- ---------- BACU016197/1-311 TPLYSQLLQA YKWSNK---- ---------- ---------- ---------- ENSBTAP00000000493/1-311 TPLYSQLLQA YKWSNK---- ---------- ---------- ---------- 151 200 bmy_05366T0/1-461 RAGAQASDLS RWPFASTPVI FSLSDIIVMY LLNGPVALQH DLYDPVXCSP ENSTTRP00000008749/1-311 ---------- ---------- ---------- ---------- ---------- ENSP00000292035/1-311 ---------- ---------- ---------- ---------- ---------- BACU016197/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000493/1-311 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_05366T0/1-461 GPRRVDRLKA WYERFGEVLL LLLLNLLPPL KKPLNMSFIY FGAAIRLPQQ ENSTTRP00000008749/1-311 ---------- ---------- ---------- ---------- ---------- ENSP00000292035/1-311 ---------- ---------- ---------- ---------- ---------- BACU016197/1-311 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000493/1-311 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_05366T0/1-461 IDQLQYHAGL ASGLLNQQSL KRSANQMGVS AKRRPKAQPT TLVLPPQYVD ENSTTRP00000008749/1-311 ---LQYHAGL ASGLLNQQSL KRSANQMGVS AKRRPKAQPT TLVLPPQYVD ENSP00000292035/1-311 ---LQYHAGL ASGLLNQQSL KRSANQMGVS AKRRPKAQPT TLVLPPQYVD BACU016197/1-311 ---LQYHAGL ASGLLNQQSL KRSANQMGVS AKRRPKAQPT TLVLPPQYVD ENSBTAP00000000493/1-311 ---LQYHAGL ASGLLNQQSL KRSANQMGVS AKRRPKAQPT TLVLPPQYVD 301 350 bmy_05366T0/1-461 DVISRIDRMF PEMSIHLSRP NGTSAMLLTD L--------- --KFSLSKTN ENSTTRP00000008749/1-311 DVISRIDRMF PEMSIHLSRP NGTSAMLLVT LGKVLKVIVV MRSLFIDRTI ENSP00000292035/1-311 DVISRIDRMF PEMSIHLSRP NGTSAMLLVT LGKVLKVIVV MRSLFIDRTI BACU016197/1-311 DVISRIDRMF PEMSIHLSRP NGTSAMLLVT LGKVLKVIVV MRSLFIDRTI ENSBTAP00000000493/1-311 DVISRIDRMF PEMTIHLSRP NGTSAMLLVT LGKVLKVIVV MRSLFIDRTI 351 400 bmy_05366T0/1-461 L-SFPQLVLI QGDCTTSLLR PPFRCLRMES -------VGF PLPLLTVVMT ENSTTRP00000008749/1-311 VKGYNENVHT EDGKLDIWSK SNYQVFQKVT DHATTALLHY QLPQMPDVVV ENSP00000292035/1-311 VKGYNENVYT EDGKLDIWSK SNYQVFQKVT DHATTALLHY QLPQMPDVVV BACU016197/1-311 VKGYNENVYT EDGKLDIWSK SNYQVFQKVT DHATTALLHY QLPQMPDVVV ENSBTAP00000000493/1-311 VKGYNENVYT EDGKLDIWSK SNYQVFQKVT DHATTALLHY QLPQMPDVVV 401 450 bmy_05366T0/1-461 KSLTTQFDGE ACTDMKREYD QCFSRWFAE- -KLLKGDCSG DPCTDLFKRY ENSTTRP00000008749/1-311 RSFMT----- ---------- -----WLRSY MKLFQAPC-- QRCGKFL--- ENSP00000292035/1-311 RSFMT----- ---------- -----WLRSY IKLFQAPC-- QRCGKFL--- BACU016197/1-311 RSFMT----- ---------- -----WLRSY IKLFQAPC-- QRCGKFL--- ENSBTAP00000000493/1-311 RSFMT----- ---------- -----WLRSY IKLFQAPC-- QRCGKFL--- 451 500 bmy_05366T0/1-461 QQCVQKAVKE KEIPIEGLEF TGHGKEKPES SS ENSTTRP00000008749/1-311 ---------Q DGLPPTWRDF RTLEAFHDTC RQ ENSP00000292035/1-311 ---------Q DGLPPTWRDF RTLEAFHDTC RQ BACU016197/1-311 ---------Q DGLPPTWRDF RTLEAFHDTC RQ ENSBTAP00000000493/1-311 ---------Q DGLPPTWRDF RTLEAFHDTC RQ