KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:33 2014 Check: 00 .. Name: ENSP00000331201/1-777 Len: 792 Check: 2480 Weight: 1.00 Name: ENSBTAP00000000527/1-777 Len: 792 Check: 7038 Weight: 1.00 Name: ENSTTRP00000007198/1-778 Len: 792 Check: 6763 Weight: 1.00 Name: BACU011620/1-714 Len: 792 Check: 7913 Weight: 1.00 Name: bmy_02259T0/1-680 Len: 792 Check: 1371 Weight: 1.00 // 1 50 ENSP00000331201/1-777 MGRGSGTFER LLDKATSQLL LETDWESILQ ICDLIRQGDT QAKYAVNSIK ENSBTAP00000000527/1-777 MGRGSGTFER LLDKATSQLL LETDWESILQ ICDLIRQGDT QAKYAVSSIK ENSTTRP00000007198/1-778 MGRGSGTFER LLDKATSQLL LETDWESILQ ICDLIRQGDT QAKYAVSSIK BACU011620/1-714 ----MSPCVS ALDKATSQLL LETDWESILQ ICDLIRQGDT QAKYAVSSIK bmy_02259T0/1-680 ----MSPCVS ALDKATSQLL LETDWESILQ ICDLIRQGDT QAKYAVSSIK 51 100 ENSP00000331201/1-777 KKVNDKNPHV ALYALEVMES VVKNCGQTVH DEVANKQTME ELKDLLKRQV ENSBTAP00000000527/1-777 KKVNDKNPHV ALYALEVMES VVKNCGQTVH DEVANKQTME ELKDLLKRQV ENSTTRP00000007198/1-778 KKVNDKNPHV ALYALEVMES VVKNCGQTVH DEVANKQTME ELKELLKRQV BACU011620/1-714 KKVNDKNPHV ALYALEVMES VVKNCGQTVH DEVANKQTME ELKELLKRQV bmy_02259T0/1-680 KKVNDKNPHV ALYALEVMES VVKNCGQTVH DEVANKQTME ELKELLKRQV 101 150 ENSP00000331201/1-777 EVNVRNKILY LIQAWAHAFR NEPKYKVVQD TYQIMKVEGH VFPEFKESDA ENSBTAP00000000527/1-777 EVNVRNKILY LIQAWAHAFR NEPKYKVVQD TYQIMKVEGH VFPEFKESDA ENSTTRP00000007198/1-778 EVNVRNKILY LIQAWAHAFR NEPKYKVVQD TYQIMKVEGH VFPEFKESDA BACU011620/1-714 EVNVRNKILY LIQAWAHAFR NEPKYKVVQD TYQIMKVEGH VFPEFKESDA bmy_02259T0/1-680 EVNVRNKILY LIQAWAHAFR NEPKYKVVQD TYQIMKVEGH VFPEFKESDA 151 200 ENSP00000331201/1-777 MFAAERAPDW VDAEECHRCR VQFGVMTRKH HCRACGQIFC GKCSSKYSTI ENSBTAP00000000527/1-777 MFAAERAPDW VDAEECHRCR VQFGVMTRKH HCRACGQIFC GKCSSKYSTI ENSTTRP00000007198/1-778 MFAAERAPDW VDAEECHRCR VQFGVMTRKH HCRACGQIFC GKCSSKYSTI BACU011620/1-714 MFAAERAPDW VDAEECHRCR VQFGVMTRKH HCRACGQIFC GKCSSKYSTI bmy_02259T0/1-680 MFAAERAPDW VDAEECHRCR VQFGVMTRKH HCRACGQIFC GKCSSKYSTI 201 250 ENSP00000331201/1-777 PKFGIEKEVR VCEPCYEQLN RKAEGKATST TELPPEYLTS PLSQQSQLPP ENSBTAP00000000527/1-777 PKFGIEKEVR VCEPCFEQLN KKAEGKAAST TELPPEYLTS PLSQQSQLPP ENSTTRP00000007198/1-778 PKFGIEKEVR VCEPCYEQLN KKAEGKAAST TELPPEYLTS PLSQQSQLPP BACU011620/1-714 PKFGIEKEVR VCEPCYEQLN KKAEGKAAST TELPPEYLTS PLSQQSQLPP bmy_02259T0/1-680 PKFGIEKEVR VCEPCYEQLN KKAEGKAAST TELPPEYLTS PLSQQSQ--- 251 300 ENSP00000331201/1-777 KRDETALQEE EELQLALALS QSEAEEKERL RQKSTYTSYP KAEPMPSASS ENSBTAP00000000527/1-777 KRDETALQEE EELQLALALS QSEAEEKERM RQKSAYTAYP KAEPTPVASS ENSTTRP00000007198/1-778 KRDETALQEE EELQLALALS QSEAEEKERM RQKSAYAAYP KAEPTPVASS BACU011620/1-714 KRDETALQEE EELQLALALS QSEAEEKERM RQKSAYAVYP KAEPTPVASS bmy_02259T0/1-680 ---------- ---------- ---------- RQKSAYAAYP KAEPTPVASS 301 350 ENSP00000331201/1-777 APPASSLYSS PVNSSAPLAE DIDPELARYL NRNYWEKKQE EARKSPTPSA ENSBTAP00000000527/1-777 APPASSLYSS PVNSSAPLAE DIDPELARYL NRNYWEKKQE EARKSPTPSA ENSTTRP00000007198/1-778 APPASSLYSS PVNSSAPLAE DIDPELARYL NRNYWEKKQE EARKSPTPSA BACU011620/1-714 APPASSLYSS PVNSSA---- ---------- ---------- ---------- bmy_02259T0/1-680 APPASSLYSS PV-------- -----LARYL NRNYWEKKQE EARKSPTPSA 351 400 ENSP00000331201/1-777 PVPLTEPAAQ PGEGHAAPTN VVENPLPETD SQPIPPSGGP FSEPQFHNGE ENSBTAP00000000527/1-777 PVPLTEPTAQ PGEGHAIPAN -VETSLPETD PQAVTAAGAA FSE-QYQNGE ENSTTRP00000007198/1-778 PVPLAEPAAQ PGEAHTVPTS -VETSLPETD PQPVNPAGGP FSEQQYQNGE BACU011620/1-714 --PLAE---- ---------- -------DID P--------- --E-QYQNGE bmy_02259T0/1-680 PVPLTEPATQ PGEGHTVPAS -VETSLPETD PQPVNPAGGP FSE-QYQNGE 401 450 ENSP00000331201/1-777 SEESHEQFLK ALQNAVTTFV NRMKSNHMRG RSITNDSAVL SLFQSINGMH ENSBTAP00000000527/1-777 SEESHAQFLK ALQNAVTTFV NRMKSNHVRG RSITNDSAVL SLFQSINTMH ENSTTRP00000007198/1-778 SEESHAQFLK ALQNAVTTFV NRMKSNHVRG RSITNDSAVL SLFQSINGMH BACU011620/1-714 SEESHTQFLK ALQNAVTTFV NRMKSNHVRG RSITNDSAVL SLFQSINSMH bmy_02259T0/1-680 SEESHAQFLK ALQNAVTTFV NRMKSNHVRG RSITNDSAVL SLFQSINSMH 451 500 ENSP00000331201/1-777 PQLLELLNQL DERRLYYEGL QDKLAQIRDA RGALSALREE HREKLRRAAE ENSBTAP00000000527/1-777 PQLLELLNQL DERRLYYEGL QDKLAQIRDA RGALSALREE HREKLRRAAE ENSTTRP00000007198/1-778 PQLLELLNQL DERRLYYEGL QDKLAQIRDA RGALSALREE HREKLRRAAE BACU011620/1-714 PQLLELLNQL DERRLYYEGL QDKLAQIRDA RGALSALREE HREKLRRAAE bmy_02259T0/1-680 PQLLELLNQL DERRLYYEGL QDKLAQIRDA RGALSALREE HREKLRRAAE 501 550 ENSP00000331201/1-777 EAERQRQIQL AQKLEIMRQK KQEYLEVQRQ LAIQRLQEQE KERQMRLEQQ ENSBTAP00000000527/1-777 EAERQRQIQL AQKLEIMRQK KQEYLEVQRQ LAIQRLQEQE KERQMRLEQQ ENSTTRP00000007198/1-778 EAERQRQIQL AQKLEIMRQK KQEYLEVQRQ LAIQRLQEQE KERQMRLEQQ BACU011620/1-714 EAERQRQIQL AQKLEIMRQK KQEYLEVQRQ LAIQRLQEQE KERQMRLEQQ bmy_02259T0/1-680 EAERQRQIQL AQKLEIMRQK KQ-------- ---------- ---------- 551 600 ENSP00000331201/1-777 KQTVQMRAQM PAFPLPYAQL QAMPAAGGVL YQPSGPASFP STFSPAGSVE ENSBTAP00000000527/1-777 KQTIQMRAQM PAFSLPYAQL QAMPAAGGVL YQPSGPASFA GTFSPAGSVE ENSTTRP00000007198/1-778 KQTIQMRAQM PAFSLPYAQL QAMPAAGGVL YQPSGPASFA GTFSPAGSVE BACU011620/1-714 KQTIQMRAQM PAFSLPYAQA P-----GGVL YQPSGPASFA GTFSPAGSVE bmy_02259T0/1-680 ---------- ---------L QAMPAAGGVL YQPSGPASFA GTFSPAGSVE 601 650 ENSP00000331201/1-777 GSPMHGVYMS QPAPAA-GPY PSMPSTAADP SMVSAYMYPA GATGAQAAPQ ENSBTAP00000000527/1-777 GSPMHTMYMS QPAPAASGPY PSMPAAAADP SMVSAYMYPA GAAGAQAAAQ ENSTTRP00000007198/1-778 GSPMHTMYMS QPAPATSGPY PSMPGAAADP SMVSAYMYTA GAAGTQAAPQ BACU011620/1-714 GSPMHTMYMS QPAPASSGPY PSMPGAAADP SMVSAYMYPA GAAGTQAAPQ bmy_02259T0/1-680 GSPMHTMYMS QPAPATSGPY PSMPGAAADP SMVSAYMYPA GAAGTQAAPQ 651 700 ENSP00000331201/1-777 AQAGPTASPA YSSYQPTPTA GYQNVASQAP QSLPAISQPP QSSTMGYMGS ENSBTAP00000000527/1-777 GPAGPTTSPA YSSYQPTPTQ GYQTVASQAP QSLPAISQPP QSGTMGYMGS ENSTTRP00000007198/1-778 GPTGPTTSPA YSSYQPTPTQ GYQNVASQAP QSLPAISQPP QSSTMGYMGS BACU011620/1-714 GPAGPTTSPA YSSYQPTPTQ GYQNVASQAP QSLPAISQPP QSSTMGYMGS bmy_02259T0/1-680 GPAGPTTSPA YSSYQPTPTQ GYQNVASQAP QSLPAISQPP QSSTMGYMGS 701 750 ENSP00000331201/1-777 QSVSMGYQPY NM-------- -----QNLMT TLPSQDASL- PPQQPYIAGQ ENSBTAP00000000527/1-777 QSVSMGYQPY SM-------- -----QNLMP TLPGQDAPLP PPQQPYISGQ ENSTTRP00000007198/1-778 QSVSMGYQPY GM-------- -----QNLMP TLPGQDAPLP PPQQPYISGQ BACU011620/1-714 QSVSMGYQPY GMQSSFLSVG LFYPPQNFMP TLPGQDAPLP PPQQPYISGQ bmy_02259T0/1-680 QSVSMGYQPY GM-------- -----QNLMP TIPGQDAPLP PPQQPYISGQ 751 800 ENSP00000331201/1-777 QPMYQQMAPS GGPPQQQPPV AQQPQAQGPP AQGSEAQLIS FD ENSBTAP00000000527/1-777 QPVYQQMAPS SGPPQQQPPV AQQPPAQGPP AQGSEAQLIS FD ENSTTRP00000007198/1-778 QPVYPQMAPS SGPPQQQPPV AQQPPPQGPP PQGSEAQLIS FD BACU011620/1-714 QPVYPQMAPS SGPPQQQPPV AQQPPPQGPP PQGSETQLIS FD bmy_02259T0/1-680 QPVYPQMAPS SGPPQQQPPV AQQPPPQGPP PQGSETQLIS FD