KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:35 2014 Check: 00 .. Name: ENSP00000426632/1-1419 Len: 1461 Check: 8961 Weight: 1.00 Name: ENSBTAP00000000533/1-1460 Len: 1461 Check: 2594 Weight: 1.00 Name: bmy_16273T0/1-1361 Len: 1461 Check: 95 Weight: 1.00 Name: ENSTTRP00000009145/1-1413 Len: 1461 Check: 91 Weight: 1.00 Name: BACU006225/1-1413 Len: 1461 Check: 9934 Weight: 1.00 // 1 50 ENSP00000426632/1-1419 MTTKRSLFVR LVPCRCLRGE EETVTTLDYS HCSLEQVPKE IFTFEKTLEE ENSBTAP00000000533/1-1460 MTTKRSLFVR LVPCRCLRGE EETVTTLDYS HCSLEQVPKE IFTFEKTLEE bmy_16273T0/1-1361 MTTKRSLFVR LVPCRCLRGE EETVTTLDYS HCSLEQVPKE IFTFEKTLEE ENSTTRP00000009145/1-1413 MTTKRSLFVR LVPCRCLRGE EETVTTLDYS HCSLEQVPKE IFTFEKTLEE BACU006225/1-1413 MTTKRSLFVR LVPCRCLRGE EETVTTLDYS HCSLEQVPKE IFTFEKTLEE 51 100 ENSP00000426632/1-1419 LYLDANQIEE LPKQLFNCQS LHKLSLPDND LTTLPASIAN LINLRELDVS ENSBTAP00000000533/1-1460 LYLDANQIEE LPKQLFNCQS LHKLSLPDND LTALPASIAN LINLRELDVS bmy_16273T0/1-1361 LYLDANQIEE LPKQLFNCQS LHKLSLPDND LTTLPASIAN LINLRELDVS ENSTTRP00000009145/1-1413 LYLDANQIEE LPKQLFNCQS LHKLSLPDND LTTLPASIAN LINLRELDVS BACU006225/1-1413 LYLDANQIEE LPKQLFNCQS LHKLSLPDND LTTLPASIAN LINLRELDVS 101 150 ENSP00000426632/1-1419 KNGIQEFPEN IKNCKVLTIV EASVNPISKL PDGFSQLLNL TQLYLNDAFL ENSBTAP00000000533/1-1460 KNGIQEFPEN IKNCKVLTVV EASVNPISKL PDGFSQLLNL TQLYLNDAFL bmy_16273T0/1-1361 KNGIQEFPEN IKNCKVLTVV EASVNPISKL PDGFSQLLNL TQLYLNDAFL ENSTTRP00000009145/1-1413 KNGIQEFPEN IKNCKVLTIV EASVNPISKL PDGFSQLLNL TQLYLNDAFL BACU006225/1-1413 KNGIQEFPEN IKNCKVLTVV EASVNPISKL PDGFSQLLNL TQLYLNDAFL 151 200 ENSP00000426632/1-1419 EFLPANFGRL TKLQILELRE NQLKMLPKTM NRLTQLERLD LGSNEFTEVP ENSBTAP00000000533/1-1460 EFLPANFGRL TKLQILELRE NQLKMLPKTM NRLTQLERLD LGSNEFTEVP bmy_16273T0/1-1361 EFLPANFGRL TKLQILELRE NQLKMLPKTM NRLTQLERLD LGSNEFTEVP ENSTTRP00000009145/1-1413 EFLPANFGRL TKLQILELRE NQLKMLPKTM NRLTQLERLD LGSNEFTEVP BACU006225/1-1413 EFLPANFGRL TKLQILELRE NQLKMLPKTM NRLTQLERLD LGSNEFTEVP 201 250 ENSP00000426632/1-1419 EVLEQLSGLK EFWMDANRLT FIPGFIGSLK QLTYLDVSKN NIEMVEEGIS ENSBTAP00000000533/1-1460 EVLEQLSGLK EFWMDGNRLT FIPGFIGSLK QLTYLDISKN NIEMVEEGIS bmy_16273T0/1-1361 EVLEQLSGLK EFWMDGNRLT FIPGFIGSLK QLTYMDVSKN NIEMVEEGIS ENSTTRP00000009145/1-1413 EVLEQLSGLK EFWMDGNRLT FIPGFIGSLK QLTYLDVSKN NIEMVEEGIS BACU006225/1-1413 EVLEQLSGLK EFWMDGNRLT FIPGFIGSLK QLTYLDVSKN NIEMVEEGIS 251 300 ENSP00000426632/1-1419 TCENLQDLLL SSNSLQQLPE TIGSLKNITT LKIDENQLMY LPDSIGGLIS ENSBTAP00000000533/1-1460 GCENLQDLLL SSNSLQQLPE TIGSLKNVTT LKIDENQLMY LPDSIGGLVS bmy_16273T0/1-1361 ACENLQDLLL SSNSLQQLPE TIGSLKNVTT LKIDENQLMY LPDSIGGLVS ENSTTRP00000009145/1-1413 ACENLQDLLL SSNSLQQLPE TVGSLKNVTT LKIDENQLMY LPDSIGGLVS BACU006225/1-1413 ACENLQDLLL SSNSLQQLPE TIGSLKNVTT LKIDENQLMY LPDSIGGLVS 301 350 ENSP00000426632/1-1419 VEELDCSFNE VEALPSSIGQ LTNLRTFAAD HNYLQQLPPE IGSWKNITVL ENSBTAP00000000533/1-1460 IEELDCSFNE LEALPSSIGQ LTNIRTFAAD HNYLQQLPPE IGSWKNITVL bmy_16273T0/1-1361 IEELDCSFNE LEALPSSIGQ LTNIRTFAAD HNYLQQLPPE IGSWKNITVL ENSTTRP00000009145/1-1413 IEELDCSFNE LEALPSSIGQ LTNIRTFAAD HNYLQQLPPE IGSWKNITVL BACU006225/1-1413 IEELDCSFNE LEALPSSIGQ LTNIRTFAAD HNYLQQLPPE IGSWKNITVL 351 400 ENSP00000426632/1-1419 FLHSNKLETL PEEMGDMQKL KVINLSDNRL KNLPFSFTKL QQLTAMWLSD ENSBTAP00000000533/1-1460 FLHSNKLETL PEEMGDMQKL KVINLSDNRL KNLPFSFTKL QQLTAMWLSD bmy_16273T0/1-1361 FLHSNKLETL PEEMGDMQKL KVINLSDNRL KNLPFSFTKL QQLTAMWLSD ENSTTRP00000009145/1-1413 FLHSNKLETL PEEMGDMQKL KVINLSDNRL KNLPFSFTKL QQLTAMWLSD BACU006225/1-1413 FLHSNKLETL PEEMGDMQKL KVINLSDNRL KNLPFSFTKL QQLTAMWLSD 401 450 ENSP00000426632/1-1419 NQSKPLIPLQ KETDSETQKM VLTNYMFPQQ PRTEDVMFIS DNESFNPSLW ENSBTAP00000000533/1-1460 NQSKPLIPLQ KETDSETQKM VLTNYMFPQQ PRTEDVMFIS DNESFNPSLW bmy_16273T0/1-1361 NQSKPLIPLQ KETDSETQKM VLTNYMFPQQ PRTEDVMFIS DNESFNPSLW ENSTTRP00000009145/1-1413 NQSKPLIPLQ KETDSETQKM VLTNYMFPQQ PRTEDVMFIS DNESFNPSLW BACU006225/1-1413 NQSKPLIPLQ KETDSETQKM VLTNYMFPQQ PRTEDVMFIS DNESFNPSLW 451 500 ENSP00000426632/1-1419 EEQRKQRAQV AFECDEDKDE REAPPREGNL KRYPTPYPDE LKNMVKTVQT ENSBTAP00000000533/1-1460 EEQRKQRAQV AFECDEDKDE REAPPREGNL KRYPTPYPDE LKNMVKTVQT bmy_16273T0/1-1361 EEQRKQRAQV AFECDEDKDE REAPPREGNL KRYPTPYPDE LKNMVKTVQT ENSTTRP00000009145/1-1413 EEQRKQRAQV AFECDEDKDE REAPPREGNL KRYPTPYPDE LKNMVKTVQT BACU006225/1-1413 EEQRKQRAQV AFECDEDKDE REAPPREGNL KRYPTPYPDE LKNMVKTVQT 501 550 ENSP00000426632/1-1419 IVHRLKDEET NEDSGRDLKP HEDQQDINKD VGVKTSESTT TVKSKVDERE ENSBTAP00000000533/1-1460 IVHRLKDEET NEDSGKDLKP HEDQQVVNND VGVKTSESIT PVRSKADERE bmy_16273T0/1-1361 IVHRLKDEET NEDSGKDLKP HEDQQVVNND ----TSESTT PVRSKADERE ENSTTRP00000009145/1-1413 IVHRLKDEET NEDSGKDLKP HEDQQVINND VGVKTSESIT PVRSKADERE BACU006225/1-1413 IVHRLKDEET NEDSGKDLKP HEDQQVVNND VGVKTSESTT AVRSKADERE 551 600 ENSP00000426632/1-1419 KYMIGNSVQK ISEPEAEISP GSLPVTANMK ASENLKHIVN HDDVFEESEE ENSBTAP00000000533/1-1460 KYMIGNSIQK TSEPEAEVSS GNLPVTANVK ASENLKHIVN HDDVFEESEE bmy_16273T0/1-1361 KYMIGNSIPK TSEPEAEVSP GNPPVTANMK ASENLKHIVN HDDVFEESEE ENSTTRP00000009145/1-1413 KYMIGNSIPK TSEPEAEVSP GNPPVTANMK ASENLKHIVN HDDVFEESEE BACU006225/1-1413 KYMIGNSIPK TSEPEAEVSP GNPPVTANMK ASENLKHIVN HDDVFEESEE 601 650 ENSP00000426632/1-1419 LSSDEEMKMA EMRPPLIETS INQPKVVALS NNKKDDTKET DSLSDEVTHN ENSBTAP00000000533/1-1460 LSSDEEMKMA EMRPPLIETS INQPKVVALS SNKKDDTKDT DSLSDEVTHN bmy_16273T0/1-1361 LSSDEEMKMA EMRPPLIETS INQPKVVALS NNKKDDTKDT DSLSDEVTHN ENSTTRP00000009145/1-1413 LSSDEEMKMA EMRPPLIETS INQPKVVALS NNKKDDTKDT DSLSDEVTHN BACU006225/1-1413 LSSDEEMKMA EMRPPLIETS INQPKVVALS NNKKDDTKDT DSLSDEVTHN 651 700 ENSP00000426632/1-1419 SNQNNSNCSS PSRMSDSVSL NTDSSQDTSL CSPVKQTHID INSKIRQEDE ENSBTAP00000000533/1-1460 SNQNNSNCSS PSRMSDSVSL NTDSSQDTSL CSPVKQTHIG INSKIRQEDE bmy_16273T0/1-1361 SNQNNSNCSS PSRMSDSVSL NTDSSQDTSL CSPVKQTHIG INSKIRQEDE ENSTTRP00000009145/1-1413 SNQNNSNCSS PSRMSDSVSL NTDSSQDTSL CSPVKQTHIG INSKIRQEDE BACU006225/1-1413 SNQNNSNCSS PSRMSDSVSL NTDSSQDTSL CSPVKQTHIG INSKIRQEDE 701 750 ENSP00000426632/1-1419 NFNSLLQNGD ILNSSTEEKF KAHDKKDFNL PEYDLNVEER LVLIEKSVDS ENSBTAP00000000533/1-1460 NFNSLLQNGD ILNHSTEEKI KVPDKKDFNL PEYDLNIEER LVLIEKGVDS bmy_16273T0/1-1361 NFNSLLQNGD ILNHSTEEKT EVPDKKDFNL PEYDLNIEER LVLIEKGVDS ENSTTRP00000009145/1-1413 NFNSLLQNGD ILNHSTEEKT EVPDKKDFNL PEYDLNIEEQ LVLIEKGVDS BACU006225/1-1413 NFNSLLQNGD ILNHSTEEKT EVPDKKDFNL PEYDLNIEER LVLIEKGVAS 751 800 ENSP00000426632/1-1419 TATADDTHKL DHINMNLNKL ITNDTFQPEI MERSKTQDIV LGTSFLSINS ENSBTAP00000000533/1-1460 TATSDESHKL DHINMNLNKL VTNDTFQPEI VERSKTQDTA LGMGFLSNNA bmy_16273T0/1-1361 TATSDESHKL DHINMNLNKL VTNDTFQPEI VERSKTEDTV LETGFLSNNA ENSTTRP00000009145/1-1413 TATSNESHKL DHINMNLNKL VTNDTFQPEI MERSKTEDTV LETGFLSNNA BACU006225/1-1413 TTTSDESHKL DHINMNLNKL VTNDTFQPEI VERSKTEDTV LETGFFSNNA 801 850 ENSP00000426632/1-1419 KEETEHLENG NKYPNLESVN KVNGHSEETS QSPNRTEPHD SDCSVDLGIS ENSBTAP00000000533/1-1460 KGEAEHLENG NKFPNVECIN KVNGHSEETP QSPRRTEPHD TDSSVDVGHS bmy_16273T0/1-1361 KGEAEHLDNG NKYPTLECIN KVNGRSEETP QSPRRTEPHD TSSSADAGLS ENSTTRP00000009145/1-1413 KGEAEHLDNG NKYPTLECIN KVNGRSEGTP QSPRRTEPHD TSSSVDAGLS BACU006225/1-1413 KGEAEHLDNG NKYPTLECIN KVNGRSEETP QSPRRTEPHD TSSSVDAGLS 851 900 ENSP00000426632/1-1419 KSTEDLSPQK SGPVGSVVKS HSITNMEIGG LKIYDILSDN GPQQPSTTVK ENSBTAP00000000533/1-1460 KSTEDLSPQK SGPIGPVVKS HSITNMETGG LKIYDILSDN GPQQPSATAK bmy_16273T0/1-1361 KSTEDLSPQR SGPIGSVVKS HSITNMETGR LKIYDILSDN GPQQPSATVK ENSTTRP00000009145/1-1413 KSTEDLSPQR SGPIGSVVKS HSITNMETGG LKIYDILSDN GPQQPSATVK BACU006225/1-1413 KSTEDLSPQR SGPIGSVVKS HSITNMETGR LKIYDILSDN GPQQPSATVK 901 950 ENSP00000426632/1-1419 ITSAVDGKNI VRSKSATLLY DQPLQVFTGS SSSSDLISGT KAIFKFDSNH ENSBTAP00000000533/1-1460 VTSTIDGKNI VRSKSATLLY DQPLQVFTGS SSSSDLISGA KAIFKFDSNH bmy_16273T0/1-1361 VTSTIDGKNI VRSKSATLLY DQPLQVFTGS SSSSDLIAGT KAIFKFDSNH ENSTTRP00000009145/1-1413 VTSTIDGKNI VRSKSATLLY DQPLQVFTGS SSSSDLIAGT KAVFKFDSNY BACU006225/1-1413 VTSTIDGKNI VRSKSATLLY DQPLQVFTGS SSSSDLIAGT KAIFKFDSNH 951 1000 ENSP00000426632/1-1419 NPEEPNIIRG P-TSGPQSAP QIYGPPQYNI QYSSSAAVKD TLWHSKQNPQ ENSBTAP00000000533/1-1460 NPEEPH-IRG PTTSGPQSVP QMYGPPQYNI QYSGSAAVKD TLWHSKQNPQ bmy_16273T0/1-1361 NPEEPNIIRG PTTSGPQSTP QIYGPPQYNI QYSSSATVKD TLWHSKQNPQ ENSTTRP00000009145/1-1413 NPEEPNIIRG PTTSGPQSTP QIYGPPQYNI QYSSSATVKD TLWHSKQNPQ BACU006225/1-1413 NPEEPNIIRG PTTSGPQSMP QIYGPPQYNI QYSSSATVKD TLWHSKQNPQ 1001 1050 ENSP00000426632/1-1419 IDHASFPPQL LPRSESTENQ SYAKHSANMN FSNHNNVRAN TAYHLHQRLG ENSBTAP00000000533/1-1460 VDPVSFPSQR FPRSESTESH SYAKHSANMN FSNHNNVRAN TGYHLHQRLG bmy_16273T0/1-1361 VDHVSFPPQR FPRSESTENH SYAKHSANMN FSNHNNVRAN TGYHLHQRLG ENSTTRP00000009145/1-1413 VDHVNFPLQR FPRSESTENH SYAKHSANMN FSNHNNVRAN TGYHLHQRLG BACU006225/1-1413 VDHVNFPPQR FPRSESTENH SYAKHSANMN FSNHNNVRAN TGYHLHQRLG 1051 1100 ENSP00000426632/1-1419 PARHGEMWAI SPNDRLIPAV TRSTIQRQSS VSSTASVNLG DPGSTRRAQI ENSBTAP00000000533/1-1460 PGRHGDMWAI SPNDRLIPGA TRTTIQRQSS VSSAASVNLG EPGSTRRTQV bmy_16273T0/1-1361 PGRHGEMWAI SPNDRLIPGS SRATIQRQSS VSSTASVNLG EPGPTRRAQV ENSTTRP00000009145/1-1413 PGRHGEMWAI SPNDRLIPGA SRTTIQRQSS VSSTASVNLG EPGPTRRAQV BACU006225/1-1413 PGRHGEMWAI SPNDRLIPGS SRTTIQRQSS VSSTASVNLG EPGPTRRAQV 1101 1150 ENSP00000426632/1-1419 PEGDYLSYRE FHSAGRTPPM MPGSQRPLSA RTYSIDGPNA SRPQSARPSI ENSBTAP00000000533/1-1460 PEGDYLSYRE LHSVGRTPPM MSGSQRPLSA RTYSVDGPHA SRPQSARPSV bmy_16273T0/1-1361 PEGDYLSYRE LHSVGRTPPI MSGSQRPLSA RTYSIDGPNA SRPQSARPSV ENSTTRP00000009145/1-1413 PEGDYLSYRE LHSVGRTPPI MSGSQRPLSA RTYSIDGPNA SRPQSARPSV BACU006225/1-1413 PEGDYLSYRE LHSVGRTPPI MSGSQRPLSA RTYSIDGPNA SRPQSARPSV 1151 1200 ENSP00000426632/1-1419 NEIPERTMSV SDFNYSRTSP SKRPNARVGS EHSLLDPPGK SKVPRDWREQ ENSBTAP00000000533/1-1460 SEIPERTMSV SDFSYSRTSP SKRPNTRVGS EHSLLDPPGK SKVPHDWREQ bmy_16273T0/1-1361 SEIPERTMSV SDFNYSRTSP SKRPNARVGS EHSLLDPPGK SKVPHDWREQ ENSTTRP00000009145/1-1413 SEIPERTMSV SDFNYSRTSP SKRPNARVGS EHSLLDPPGK SKVPHDWREQ BACU006225/1-1413 SEIPERTMSV SDFSYSRTSP SKRTNARVGS EHSLLDPPGK SKVPHDWREQ 1201 1250 ENSP00000426632/1-1419 VLRHIEAKKL EKSMLSRSF- ---------- ---------- ---------- ENSBTAP00000000533/1-1460 VLRHIEAKKL EKSMLSRSFN SNFTAVSNFH YGSSRDLHGS QGSLALSVAD bmy_16273T0/1-1361 VLRHIEAKKL E--------- ---------- ---------- ---------- ENSTTRP00000009145/1-1413 VLRHIEAKKL EK-------- ---------- ---------- ---------- BACU006225/1-1413 VLRHIEAKKL E--------- ---------- ---------- ---------- 1251 1300 ENSP00000426632/1-1419 ---------N SNFTTVSSFH CGSSRDLHGS QGSLALSVAD RRGSGGHIFR ENSBTAP00000000533/1-1460 GRGSGGHTFR HPQTSCPGDP CQDDIFISGQ QNYPSATLSH KDVLPDSLMK bmy_16273T0/1-1361 ---------K HPQTSCAGDP CQDDIFISGQ QNYPSATLSH KDVLPDSLMK ENSTTRP00000009145/1-1413 ---------K HPQTSCAGDP CQDDIFISGQ QNYPSATLSH KD-LPDSLMK BACU006225/1-1413 ---------K HPQTSCAGDP CQDDIFISGQ QNYPSATLSH KDVLPDSLMK 1301 1350 ENSP00000426632/1-1419 MPLSNGQMGQ PLRPQANYSQ IHHP-PQASV ARHPSREQLI DYLMLKVAHQ ENSBTAP00000000533/1-1460 MPLSNGQMGQ PLRPQANYSQ IHHPLPQASV ARHPSREQLI DYLMLKVAHQ bmy_16273T0/1-1361 ---------- -----CGYYC I--------V AFSVISNKFI -FIL------ ENSTTRP00000009145/1-1413 MPLSNGQMGQ PLRPQANYSQ IHHPLPQASV ARHPSREQLI DYLMLKVAHQ BACU006225/1-1413 MPLSNGQMGQ PLRPQANYSQ IHHPLPQASV ARHPSREQLI DYLMLKVAHQ 1351 1400 ENSP00000426632/1-1419 PPYTQPHCSP RQGHELAKQE IRVRVEKDPE LGFSISGGVG GRGNPFRPDD ENSBTAP00000000533/1-1460 PPYTQPHCSP RQGHELARQE IRVRVEKDPE LGFSISGGVG GRGNPFRPDD bmy_16273T0/1-1361 ---------- --------TQ IRVRVDKDPE LGFSISGGVG GRGNPFRPDD ENSTTRP00000009145/1-1413 PPYTQPHCSP RQGHELARQE IRVRVDKDPE LGFSISRGVG GRGNPFRPDD BACU006225/1-1413 PPYTQPHCSP RQGHELARQE IRVRVDKDPE LGFSISGGVG GRGNPFRPDD 1401 1450 ENSP00000426632/1-1419 DGIFVTRVQP EGPASKLLQP GDKIIQANGY SFINIEHGQA VSLLKTFQNT ENSBTAP00000000533/1-1460 DGIFVTRVQP EGPASKLLQP GDKIIQANGY SFINIEHGQA VSLLKTFQNT bmy_16273T0/1-1361 DGIFVTRVQP EGPASKLLQP GDKIIQANGY SFINIEHGQA VSLLKTFQNT ENSTTRP00000009145/1-1413 DGIFVTRVQP EGPASKLLQP GDKIIQANGY SFINIEHGQA VSLLKTFQNT BACU006225/1-1413 DGIFVTRVQP EGPASKLLQP GDKIIQANGY SFINIEHGQA VSLLKTFQNT 1451 1500 ENSP00000426632/1-1419 VELIIVREVS S ENSBTAP00000000533/1-1460 VELIILREVS S bmy_16273T0/1-1361 VELIIVREVS S ENSTTRP00000009145/1-1413 VELIIVREVS S BACU006225/1-1413 VELIIVREVS S