KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:36 2014 Check: 00 .. Name: BACU001871/1-392 Len: 591 Check: 1041 Weight: 1.00 Name: ENSBTAP00000000539/1-556 Len: 591 Check: 2218 Weight: 1.00 Name: ENSP00000219746/1-576 Len: 591 Check: 8061 Weight: 1.00 Name: bmy_19081T0/1-416 Len: 591 Check: 4566 Weight: 1.00 Name: ENSTTRP00000006500/1-555 Len: 591 Check: 2690 Weight: 1.00 // 1 50 BACU001871/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000539/1-556 MDVRFYPAAA GDPAGLDFAQ CLGYYGYSKF GNNNNYMNMA EANNAFFAAS ENSP00000219746/1-576 MDVRFYPAAA GDPASLDFAQ CLGYYGYSKF GNNNNYMNMA EANNAFFAAS bmy_19081T0/1-416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006500/1-555 ---------- ---------- ---------F GNNNNYMNMA EANNAFFAAS 51 100 BACU001871/1-392 -QTFHTPSLG DEEFEIPPIT PPPESDPALG MPDVLLPFQG LSDPLPSQGS ENSBTAP00000000539/1-556 EQTFHTPSLG DEEFEIPPIT PPPESDPALG MPDVLLPFQG LSDPLPSQGS ENSP00000219746/1-576 EQTFHTPSLG DEEFEIPPIT PPPESDPALG MPDVLLPFQA LSDPLPSQGS bmy_19081T0/1-416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006500/1-555 EQTFHTPSLG DEEFEIPPIT PPPESDPALG MPDVLLPFQG LSDPLPSQGS 101 150 BACU001871/1-392 EFTPQFPPQS LDLPSITISR NLVEQDGVLH SSGLHMDQSH TQVSQYRQDP ENSBTAP00000000539/1-556 EFTPQFPPQS LDLPSITISR NLVEQDGVLH SSGLHMDQSH TQVSQYRQDP ENSP00000219746/1-576 EFTPQFPPQS LDLPSITISR NLVEQDGVLH SSGLHMDQSH TQVSQYRQDP bmy_19081T0/1-416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006500/1-555 EFTPQFPPQS LDLPSITISR NLVEQDGVLH SSGLHMDQSH TQVSQYRQDP 151 200 BACU001871/1-392 SLIMRSIVHM TDAARSGIMP PAQLTTINQS QLSAQLGLNL GGASVPHTSP ENSBTAP00000000539/1-556 SVIMRSIVHM TDAARSGIMP PAQLTTINQS QLSAQLGLNL GGASVPHTSP ENSP00000219746/1-576 SLIMRSIVHM TDAARSGVMP PAQLTTINQS QLSAQLGLNL GGASMPHTSP bmy_19081T0/1-416 ---MRSIVHM TDAARSGIMP PAQLTTINQS QLSTQLGLNL GGASVPHTSP ENSTTRP00000006500/1-555 SLIMRSIIHM TDAARSGIMP PAQLTTINQS QLSAQLGLNL GGASVPHTSP 201 250 BACU001871/1-392 SPPASKSATP SPSSSINEED ADESNRAIGE KRAAPDSGKK PKTPKKKKKK ENSBTAP00000000539/1-556 SPPASKSATP SPSSSINEED ADETNRAIGE KRAAPDSGKK PKTPKKKKKK ENSP00000219746/1-576 SPPASKSATP SPSSSINEED ADEANRAIGE KRAAPDSGKK PKTPKKKKKK bmy_19081T0/1-416 SPPASKSATP SPSSSINEED ADESNRAIGE KRAAPDSGKK PKTPKKKKKK ENSTTRP00000006500/1-555 SPPASKSATP SPSSSINEED ADESNRAIGE KRAAPDSGKK PKTPKKKKKK 251 300 BACU001871/1-392 DPNEPQKPVS AYALFFRDTQ AAIKGQNPNA TFGEVSKIVA SMWDSLGEEQ ENSBTAP00000000539/1-556 DPNEPQKPVS AYALFFRDTQ AAIKGQNPNA TFGEVSKIVA SMWDSLGEEQ ENSP00000219746/1-576 DPNEPQKPVS AYALFFRDTQ AAIKGQNPNA TFGEVSKIVA SMWDSLGEEQ bmy_19081T0/1-416 DPNEPQKPVS AYALFFRDTQ AAIKGQNPNA TFGEVSKIVA SMWDSLGEEQ ENSTTRP00000006500/1-555 DPNEPQKPVS AYALFFRDTQ AAIKGQNPNA TFGEVSKIVA SMWDSLGEEQ 301 350 BACU001871/1-392 KQVYKRKTEA AKKEYLKALA AYRASLVSKA AAESAEAQTI RSVQQTLAST ENSBTAP00000000539/1-556 KQVYKRKTEA AKKEYLKALA AYRASLVSKA AAESAEAQTI RSVQQTLAST ENSP00000219746/1-576 KQVYKRKTEA AKKEYLKALA AYRASLVSKA AAESAEAQTI RSVQQTLAST bmy_19081T0/1-416 KQVYKRKTEA AKKEYLKALA AYRASLVSK- ---------- -----TLAST ENSTTRP00000006500/1-555 KQVYKRKTEA AKKEYLKALA AYRASLVSKA AAESAEAQTI RSVQQTLAST 351 400 BACU001871/1-392 NLTSSLLLNP PLSQHGTVSA SPQTLQQSLP RSIAPKPLTM RLPMNQIVTS ENSBTAP00000000539/1-556 NLTSSLLLNP PLSQHGTVSA SPQTLQPSLP RSIAPKPLTM RLPVNPMVTS ENSP00000219746/1-576 NLTSSLLLNT PLSQHGTVSA SPQTLQQSLP RSIAPKPLTM RLPMNQIVTS bmy_19081T0/1-416 NLTSSLLLNP PLSQHGTVSA SPQTLQQSLP RSIAPKPLTM RLPMNQIVTS ENSTTRP00000006500/1-555 NLTSSLLLSP PLSQHGTVSA SPQTLQQSLP RSIAPKPLTM RLPMNQIVTS 401 450 BACU001871/1-392 VTIAANMPSN IGAPLISS-- ---------- ---------- ---------- ENSBTAP00000000539/1-556 VTIAANMPSN LGAPLISS-- --MVGSASSA QVSPSVQT-- --------QQ ENSP00000219746/1-576 VTIAANMPSN IGAPLISSMG TTMVGSAPST QVSPSVQTQQ HQMQL-QQQQ bmy_19081T0/1-416 VTIAANMPSN IGAPLISS-- --MVGSASST QVSPSVQTQQ HQMQLQQQQQ ENSTTRP00000006500/1-555 VTIATNMPSN IGAPLISS-- --MVGSASST QVSPSVQTQQ HQMQL-QQQQ 451 500 BACU001871/1-392 ---------- ---------- --------MG RSKFWW---- ---------- ENSBTAP00000000539/1-556 QQQQQQMQQL QQQQLQQQQL QQQQLQQQLQ QQHFQHHVQ- ---LQQQQLQ ENSP00000219746/1-576 QQQQQQMQQM QQQQLQQHQM -HQQIQQQMQ QQHFQHHMQQ HLQQQQQHLQ bmy_19081T0/1-416 QQQQQQMQQM QQQQLQQHQM -HQQIQQQMQ QQHFQHHMQQ HL-QQQQHLQ ENSTTRP00000006500/1-555 QQQQQQMQQM QQQQLQQHQM -HQQIQQQMQ QQHFQHHMQQ HL-QQQQHLQ 501 550 BACU001871/1-392 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000539/1-556 QHIN----QQ QLQQRLQLQQ LQHMQHQSQP SPRQHSPVTS QITSPIPALG ENSP00000219746/1-576 QQINQQQLQQ QLQQRLQLQQ LQHMQHQSQP SPRQHSPVAS QITSPIPAIG bmy_19081T0/1-416 QQINQQQLQQ QLQQHLQLQQ LQHMQHQSQP SPRQHSPVTS QITSPIPAIG ENSTTRP00000006500/1-555 QQINQQQLQQ QLQQHLQLQQ LQHMQHQSQP SPRQHSPVTS QITSPIPAIG 551 600 BACU001871/1-392 -------KDD AFCFFRSPEQ VLNR------ ---------- - ENSBTAP00000000539/1-556 SPQPASQQHP SQIQSQTQTQ VLSQV----- --------SI F ENSP00000219746/1-576 SPQPASQQHQ SQIQSQTQTQ VLSQV----- --------SI F bmy_19081T0/1-416 SPQPASQQHQ SQIQSQTQTQ VLSQALPTIC ESNRLMNPGT Y ENSTTRP00000006500/1-555 SPQPASQQHQ SQIQSQTQTQ VLSQALPTIC ESNRLMNPGT Y