KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:38 2014 Check: 00 .. Name: ENSP00000226413/1-328 Len: 328 Check: 8370 Weight: 1.00 Name: ENSBTAP00000000559/1-328 Len: 328 Check: 8935 Weight: 1.00 Name: ENSTTRP00000007374/1-328 Len: 328 Check: 8486 Weight: 1.00 Name: bmy_18322T0/1-179 Len: 328 Check: 3856 Weight: 1.00 Name: BACU015717/1-179 Len: 328 Check: 3433 Weight: 1.00 // 1 50 ENSP00000226413/1-328 MANSASPEQN QNHCSAINNS IPLMQGNLPT LTLSGKIRVT VTFFLFLLSA ENSBTAP00000000559/1-328 MANSDSPEQN ENHCSAINSS IPLTPGSLPT LTLSGKIRVT VTFFLFLLST ENSTTRP00000007374/1-328 MANSASPEQN QNHCSAINSS ILLTQGNLPT LTLSGKIRVT VTFFLFLLST bmy_18322T0/1-179 MANSASPEQN QNHCSAINSS VPLTQGNLPT LTLSGKIRVT VTFFLFLLST BACU015717/1-179 MANSASAEQN QNHCSAINSS IPLTQGNLPT LTLSGKIRVT VTFFLFLLST 51 100 ENSP00000226413/1-328 TFNASFLLKL QKWTQKKEKG KKLSRMKLLL KHLTLANLLE TLIVMPLDGM ENSBTAP00000000559/1-328 IFNTSFLLKL QNWTQRKEKR KKLSRMKLLL KHLTLANLLE TLIVMPLDGM ENSTTRP00000007374/1-328 TFNASFLLKL QKWTQRKEKG KKLSRMKVLL KHLTLANLLE TLIVMPLDGM bmy_18322T0/1-179 TFNASFLLKL QKWTQRKEKG KKLSRMKVLL KHLTLANLLE TLIVMPLDGM BACU015717/1-179 TFNASFLLKL QKWTQRKEKG KKLSRMKVLL KHLTLANLLE TLIVMPLDGM 101 150 ENSP00000226413/1-328 WNITVQWYAG ELLCKVLSYL KLFSMYAPAF MMVVISLDRS LAITRPLALK ENSBTAP00000000559/1-328 WNITVQWYAG ELLCKVLSYL KLFSMYAPAF MMVVISLDRS LAITKPLAVK ENSTTRP00000007374/1-328 WNITVQWYAG ELLCKVLSYL KLFSMYAPAF VMVVISLDRS LAITRPLAVK bmy_18322T0/1-179 WNITVQWYAG ELLCKVLSYL KLFSMYAPAF VMVVISLDRS LAITRPLAVK BACU015717/1-179 WNITVQWYAG ELLCKVLSYL KLFSMYAPAF VMVVISLDRS LAITRPLAVK 151 200 ENSP00000226413/1-328 SNSKVGQSMV GLAWILSSVF AGPQLYIFRM IHLADSSGQT KVFSQCVTHC ENSBTAP00000000559/1-328 SNSKLGQFMI GLAWLLSSIF AGPQLYIFGM IHLADDSGQT EGFSQCVTHC ENSTTRP00000007374/1-328 SNNKLGQLMI GLAWLLSSIF AGPQLYIFRM IHLEDDSGQT EGFSQCVTHC bmy_18322T0/1-179 SNNKLGQLMI GLAWLLSSIF AGPQ------ ---------- ---------- BACU015717/1-179 SNNKLGQLLI GLAWLLSSIF AGPQ------ ---------- ---------- 201 250 ENSP00000226413/1-328 SFSQWWHQAF YNFFTFSCLF IIPLFIMLIC NAKIIFTLTR VLHQDPHELQ ENSBTAP00000000559/1-328 SFPQWWHQAF YNFFTFSCLF IIPLLIMVIC NAKIIFTLTR VLHQDPHKLQ ENSTTRP00000007374/1-328 SFPQWWHQAF YNFFTFTCLF IIPLLIMLIC NAKIIFTLTS VLHQDPHKLQ bmy_18322T0/1-179 ---------- -------CIF ---------- ---------- -LH------- BACU015717/1-179 ---------- -------CIF ---------- ---------- -LH------- 251 300 ENSP00000226413/1-328 LNQSKNNIPR ARLKTLKMTV AFATSFTVCW TPYYVLGIWY WFDPEMLNRL ENSBTAP00000000559/1-328 LNQSKNNIPR ARLRTLKMTV AFATSFTVCW TPYYVLGIWY WFDPDMVNRV ENSTTRP00000007374/1-328 LNQSKNNIPQ ARLRTLKMTV AFATSFTVCW TPYYVLGIWY WFDPEMVNRV bmy_18322T0/1-179 ---------- ---------- ---------- ---------- ---------- BACU015717/1-179 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000226413/1-328 SDPVNHFFFL FAFLNPCFDP LIYGYFSL ENSBTAP00000000559/1-328 SDPVNHFFFL FAFLNPCFDP LIYGYFSL ENSTTRP00000007374/1-328 SDPVNHFFFL FAFLNPCFDP LIYGYFSL bmy_18322T0/1-179 ---------- ---------- -------- BACU015717/1-179 ---------- ---------- --------