KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:11:40 2014 Check: 00 ..
Name: ENSTTRP00000007924/1-311 Len: 323 Check: 585 Weight: 1.00
Name: BACU012459/1-189 Len: 323 Check: 5127 Weight: 1.00
Name: bmy_08234T0/1-195 Len: 323 Check: 8227 Weight: 1.00
Name: ENSP00000360488/1-315 Len: 323 Check: 8723 Weight: 1.00
Name: ENSBTAP00000000570/1-315 Len: 323 Check: 1889 Weight: 1.00
//
1 50
ENSTTRP00000007924/1-311 --------MH GHGGYDSDFS DDEHCGESSK RKKKTVEDDV LLKKPFQKEK
BACU012459/1-189 MVKRCEIQMH GHGGYDSDFS DDEHYGESSK RKKKTVEDDL LLKKPFQKEK
bmy_08234T0/1-195 --------MH GHGGYDSDFS DDEHCGESSK RKKKTVEDDL LLKKPFQKEK
ENSP00000360488/1-315 --------MH GHGGYDSDFS DDERCGESSK RKKRTVEDDL LLQKPFQKEK
ENSBTAP00000000570/1-315 --------MH GHGGYDSDFS DDEHCGESSK RKKRTVEDDL LLKKPFQKEK
51 100
ENSTTRP00000007924/1-311 HGKVVHKQVA AELLDREEAR NRRFHLIAMD AYQRHTKFVN DYILYYGGKK
BACU012459/1-189 HGKVVHKQVA AELLDR---- ---------- ---------- ----------
bmy_08234T0/1-195 HGKVVHKQVA AELLDREEAR NRRFHLIAMD AYQRHAKFVN DYILYYGGKR
ENSP00000360488/1-315 HGKVAHKQVA AELLDREEAR NRRFHLIAMD AYQRHTKFVN DYILYYGGKK
ENSBTAP00000000570/1-315 HGKVVHKQVA AELLDREEAK NRRFHLIAMD AYQRHTKFVN DYILYYGGKK
101 150
ENSTTRP00000007924/1-311 EDFRRLGEND KIDMDIIREN HRFLWNEEDE MDMNWEKRLA KKYYDKLFKE
BACU012459/1-189 -------END KIDMDVIREN HRFLWNEEDE MDMNWEKRLA KKYYDKLFKE
bmy_08234T0/1-195 EDFRRLGEND KIDMDVIREN HRFLWNEEDE MDMNWEKRLA KKYYDKLFKE
ENSP00000360488/1-315 EDFKRLGEND KTDLDVIREN HRFLWNEEDE MDMTWEKRLA KKYYDKLFKE
ENSBTAP00000000570/1-315 EDFRRLGEND KTDMDVIREN HRFLWNEEDE MDMNWEKRLA KKYYDKLFKE
151 200
ENSTTRP00000007924/1-311 YCVADLTRYK ENKFGFRWRV EKEVISGKGQ FCCGR--CDK K-GLKSWEXX
BACU012459/1-189 YCVADLTRYK ENKFGFRWRV EKEVISGKGQ FCCGNKCCDK KEGLKSWEVN
bmy_08234T0/1-195 YCVADLTRYK ENKEAL---M RKEVLQ---- ---------- -------NLN
ENSP00000360488/1-315 YCIADLSKYK ENKFGFRWRV EKEVISGKGQ FFCGNKYCDK KEGLKSWEVN
ENSBTAP00000000570/1-315 YCIADLSRYK ENKFGFRWRI EKEVISGKGQ FCCGNKSCDK KEGLKSWEVN
201 250
ENSTTRP00000007924/1-311 XXXXXXXXXX XXXXXXXLCQ ECSFKLNFHH RRKEVKSKKR KDKARKDCEE
BACU012459/1-189 FGYIEHGEKR NALVKL---- ---------- NKKEI----- ----------
bmy_08234T0/1-195 FGRAHYQRQM KN-------- ---------H NKKEI----- ----------
ENSP00000360488/1-315 FGYIEHGEKR NALVKLRLCQ ECSIKLNFHH RRKEIKSKKR KDKTKKDCEE
ENSBTAP00000000570/1-315 FGYTEHGEKR NALVKLRLCQ ECSFKLNFHH RRKEIKSKKR KDKAEKDSEE
251 300
ENSTTRP00000007924/1-311 SSHKKSRLSS VEESSKKKDK AHSLSVKSEN S-QRSSDEEG STSESELWKG
BACU012459/1-189 --FSDVRICT M--------- ---------- ---------- ----------
bmy_08234T0/1-195 --FSDVRICT M--------- ---------- ---------- ----------
ENSP00000360488/1-315 SSHKKSRLSS AEEASKKKDK GHSSSKKSED SLLRNSDEEE SASESELWKG
ENSBTAP00000000570/1-315 STHKKSRLSS VEETSKTKDK AHSSSVKSEN SVNRNSDEEE SASESELWKG
301 350
ENSTTRP00000007924/1-311 PLPETDEKSQ EEEFDEYFQG LFL
BACU012459/1-189 ---------- ---------- ---
bmy_08234T0/1-195 ---------- ---------- ---
ENSP00000360488/1-315 PLPETDEKSQ EEEFDEYFQD LFL
ENSBTAP00000000570/1-315 PLPETDEKSQ EEEFDEYFQD LFL