KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:40 2014 Check: 00 .. Name: bmy_02296T0/1-248 Len: 495 Check: 2201 Weight: 1.00 Name: BACU003798/1-241 Len: 495 Check: 6849 Weight: 1.00 Name: ENSTTRP00000004071/1-340 Len: 495 Check: 4145 Weight: 1.00 Name: ENSP00000376184/1-343 Len: 495 Check: 622 Weight: 1.00 Name: ENSBTAP00000000573/1-344 Len: 495 Check: 2524 Weight: 1.00 // 1 50 bmy_02296T0/1-248 ---------- ---------- ---------- ---------- ---------- BACU003798/1-241 MAGTGERTMN TGPLPHPLTP HCSTQRCLSS ELCGSASSSC QNRALPLGTR ENSTTRP00000004071/1-340 ---------- ---------- ---------- ---------- ---------- ENSP00000376184/1-343 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000573/1-344 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_02296T0/1-248 ---------- ---------- ---------- ---------- ---------- BACU003798/1-241 AVRKLARNQG HWARPPTCNL RRSWSGSFRV NLPDAGEGRP LVLVLGRDAA ENSTTRP00000004071/1-340 ---------- ---------- ---------- ---------- ---------- ENSP00000376184/1-343 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000573/1-344 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_02296T0/1-248 ---------- ---------- -MSAVLSPP- ---------- ---VQACRAW BACU003798/1-241 AFRNREPTRR SLTILPLVAT MLTACFSRPL SQLPRKALNF SDRVNGARGS ENSTTRP00000004071/1-340 ---------- ---------- VLTARFSRPL SQLPRKTLNF SDRVNGTRGS ENSP00000376184/1-343 ---------- ---------- MLATRLSRPL SRLPGKTLSA CDRENGARRP ENSBTAP00000000573/1-344 ---------- ---------- MLTARLSRPL SQLPRKTLNF SDRENGTRGS 151 200 bmy_02296T0/1-248 LTMRASQ--- ---------- ---------- --CS------ ---------- BACU003798/1-241 LLFHSASFVP VDHRTYAASV NPVGSKAVLV TGFDSGFGFS LAKHLHSEGF ENSTTRP00000004071/1-340 LLFHSASFVP VDRRTYAASV NPVASKAVLV TGCDSGFGFS LAKHLHSKGF ENSP00000376184/1-343 LLLGSTSFIP IGRRTYASAA EPVGSKAVLV TGCDSGFGFS LAKHLHSKGF ENSBTAP00000000573/1-344 LLLYSAPFVP VGRRTYAASV DPVGSKAVLI TGCDSGFGFS LAKHLHSEGF 201 250 bmy_02296T0/1-248 ---------- ---------- ---------- ---------- ---------- BACU003798/1-241 LVFSGYLMK- ---------- ---------- ---------- ---------- ENSTTRP00000004071/1-340 LVFAGYLMKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376184/1-343 LVFAGCLMKD KGHDGVKELD SLNSDRLRTV QLNVCSSEEV EKVVEIVRSS ENSBTAP00000000573/1-344 LVFAGCLMKD KGSDGVKELD SMKSDRLRTV QLNVCKSEEV DKAAEVIRSS 251 300 bmy_02296T0/1-248 ---------- ---------- GDVEFTSMET YKEVAEVNLW GTVRGTKSFL BACU003798/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004071/1-340 XXXXXXXL-G LVNNAGISAF GDVEFTSMET YKEVVEVNLW GTVRGTKPFL ENSP00000376184/1-343 LKDPEKGMWG LVNNAGISTF GEVEFTSLET YKQVAEVNLW GTVRMTKSFL ENSBTAP00000000573/1-344 LEDPEKGLWG LVNNAGISTF GDVEFTSMET YKEVAEVNLW GTVRVTKAFL 301 350 bmy_02296T0/1-248 PLIQRATGCV VSISSRLGRM AHAAGPPYCI TRFGVEAFSD CLRYEVHPLG BACU003798/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004071/1-340 PLI-RATGCV VNTNGMLGRM AHAAGAPYCI TRFGV-AFSD CLRYEVHPLG ENSP00000376184/1-343 PLIRRAKGRV VNISSMLGRM ANPARSPYCI TKFGVEAFSD CLRYEMYPLG ENSBTAP00000000573/1-344 PLIRRAKGRV VNISSMMGRM ANVARSPYCI TKFGVEAFSD CLRYEMHPLG 351 400 bmy_02296T0/1-248 GKVGVVEPGN FNATTSLY-G AERIQAIASK MWDELPEGVR KDYGRKYFDE BACU003798/1-241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004071/1-340 VKVGVVEPGN FIATTSLH-G AERIHAIASK MWDELPEGVR KDYGRKYFDE ENSP00000376184/1-343 VKVSVVEPGN FIAATSLY-S PESIQAIAKK MWEELPEVVR KDYGKKYFDE ENSBTAP00000000573/1-344 VKVSVVEPGN FIAATSLYGG TERIQAIANK MWEELPEVVR QDYGRKYFDE 401 450 bmy_02296T0/1-248 RVAKMETYCN SGSTDTSPVI SAVTHTLTSG YPLHSLPPHG LLLLGANADH BACU003798/1-241 ---------- ---------- ---------A TPYTRYHP-- -------MDY ENSTTRP00000004071/1-340 RVVKMETYCN SSSTDTSPII SAVTHTLTSA TPCARYHP-- -------MDY ENSP00000376184/1-343 KIAKMETYCS SGSTDTSPVI DAVTHALTAT TPYTRYHP-- -------MDY ENSBTAP00000000573/1-344 KVARMESYCT SGSTDTSPVI KAVTHALTAT TPYTRYHP-- -------MDY 451 500 bmy_02296T0/1-248 DPLARSDLRQ DLHTLRSFAL ASAGEPWGEG RGRREGGGGA CVITS BACU003798/1-241 ---LRMRITT HL-------- ---------- ----PGAISD RIYIH ENSTTRP00000004071/1-340 CCWVRMRITT HL-------- ---------- ----PRVISD RIYIR ENSP00000376184/1-343 YWWLRMQIMT HL-------- ---------- ----PGAISD MIYIR ENSBTAP00000000573/1-344 YWWLRMQIMT HF-------- ---------- ----PGAISD RIYIH