KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:11:44 2014 Check: 00 ..
Name: ENSP00000273859/1-1426 Len: 1428 Check: 3332 Weight: 1.00
Name: ENSBTAP00000000601/1-1423 Len: 1428 Check: 5369 Weight: 1.00
Name: ENSTTRP00000003068/1-1320 Len: 1428 Check: 4916 Weight: 1.00
Name: bmy_20945T0/1-930 Len: 1428 Check: 3637 Weight: 1.00
Name: BACU008744/1-1422 Len: 1428 Check: 4669 Weight: 1.00
//
1 50
ENSP00000273859/1-1426 MTEALQWARY HWRRLIRGAT RDDDSGPYNY SSLLACGRKS SQTPKLSGRH
ENSBTAP00000000601/1-1423 MTELLQWARY HWQRPIGRTN TDDDERPYSY SSLLACGGKS SQTPRLAGKH
ENSTTRP00000003068/1-1320 ---------- ---------- ---------- ---------- ----------
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 MTEPLRWARY HWQWLTGGAN RDDHERPYSY SSLLACRGKS SQTPTLSGKH
51 100
ENSP00000273859/1-1426 RIVVPHIQPF KDEYEKFSGA YVNNRIRTTK YTLLNFVPRN LFEQFHRAAN
ENSBTAP00000000601/1-1423 RVVVPHLQLF KEEYEKFSGT YVNNRIRTTK YTLLNFVPRN LFEQFHRVAN
ENSTTRP00000003068/1-1320 ---------- ---------- ---------- ---------- -------VAN
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 RVVVPHLQPF KDEYEKFSGT YVNNRIRTTK YTLLNFVPRN LFEQFHRVAN
101 150
ENSP00000273859/1-1426 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKIDK
ENSBTAP00000000601/1-1423 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKIDK
ENSTTRP00000003068/1-1320 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKLDK
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 LYFLFLVVLN WVPLVEAFQK EITMLPLVAV LTIIAIKDGL EDYRKYKLDK
151 200
ENSP00000273859/1-1426 QINNLITKVY SRKEKKYIDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD
ENSBTAP00000000601/1-1423 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IHLSCNEVIP ADMVLLFSTD
ENSTTRP00000003068/1-1320 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD
201 250
ENSP00000273859/1-1426 PDGICHIETS GLDGESNLKQ RQVVRGYAEQ DSEVDPEKFS SRIECESPNN
ENSBTAP00000000601/1-1423 PDGICHIETS GLDGESNLKQ KQVVRRYAEQ DSEVDPEKFS SRIECESPNN
ENSTTRP00000003068/1-1320 PDGICHIETS GLDGESNLKQ RQVVRGYTEQ DSEVDPEKFS SRIECESPNN
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 PDGICHIETS GLDGESNLKQ RQVVRGYTEQ DSEIDPEKFS SRIECESPNN
251 300
ENSP00000273859/1-1426 DLSRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVVGI VVYAGHETKA
ENSBTAP00000000601/1-1423 DLNRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA
ENSTTRP00000003068/1-1320 DLSRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 DLNRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA
301 350
ENSP00000273859/1-1426 MLNNSGPRYK RSKLERRANT DVLWCVMLLV IMCLTGAVGH GIWLSRYEKM
ENSBTAP00000000601/1-1423 MLNNSGPRYK RSKLERRANT DVLWCVLLLV VMCLTGALGH GIWLSRYENI
ENSTTRP00000003068/1-1320 MLNNSGPRYK RSNLERRANT DVLCCVLLLV IMCLTGALGH GIWLSRYENI
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 MLNNSGPRYK RSNLERRANT DVLCCVLLLV IMCLTGALGH GIWLSRYENI
351 400
ENSP00000273859/1-1426 HFFNVPEPDG HIISPLLAGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI
ENSBTAP00000000601/1-1423 PFFNIPEPDG HSLSPVLAGF YMFWTMIILL QVLIPISLYV SIEIVKLGQV
ENSTTRP00000003068/1-1320 PFFNIPEPDG HVISPVLGGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 PFFNIPEPDG HVISPVLGGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI
401 450
ENSP00000273859/1-1426 YFIQSDVDFY NEKMDSIVQC RALNIAEDLG QIQYLFSDKT GTLTENKMVF
ENSBTAP00000000601/1-1423 YFIQSDVDFY NEKMGSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF
ENSTTRP00000003068/1-1320 YFIQSDVDFY NEKMDSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ----------
BACU008744/1-1422 YFIQSDVDFY NEKMDSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF
451 500
ENSP00000273859/1-1426 RRCSVAGFDY CHEENARRLE SYQEAVSEDE DFIDTVSGSL SNMAKPRAPS
ENSBTAP00000000601/1-1423 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSADTPSGSL SNMAKPRALS
ENSTTRP00000003068/1-1320 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSADTPSGSL SNMAKPGAPS
bmy_20945T0/1-930 ---------- ---------- ---------- ---------- --MAKPRAPS
BACU008744/1-1422 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSPDTPSGSL SNMAKPRAAS
501 550
ENSP00000273859/1-1426 CRTVHNGPLG NKPSNHLAGS SFTLGSGEGA SEVPHSRQAA FSSPIETDVV
ENSBTAP00000000601/1-1423 CRTVHSRPLG SISSNHLTGS CFALESREGA SEVPHSRQAA FSSPIETDVV
ENSTTRP00000003068/1-1320 CRMVRSGPLG SISSDHLTGS CFALGS--GA SEVPHSRQAA FSSPIETDVV
bmy_20945T0/1-930 CRMVRNGPLG SXSSNHLTGS CFALGSGEGA XEVPHSRQAA FSSPIETDVV
BACU008744/1-1422 CRMVRNGPLG SVSSNHLTGS CFALGSGEGA SEVPHSRQAA FSSPMETDVV
551 600
ENSP00000273859/1-1426 PDTRLLDKFS QITPRLFMPL DETIQNPPME TLYIIDFFIA LAICNTVVVS
ENSBTAP00000000601/1-1423 PDTRLLDKFS QITPLLFTPT DETIPDPPLE TLYIIDFFIA LAICNTVVVS
ENSTTRP00000003068/1-1320 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS
bmy_20945T0/1-930 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS
BACU008744/1-1422 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS
601 650
ENSP00000273859/1-1426 APNQPRQKIR HPSLGGLPIK SLEEIKSLFQ RWSVRRSSSP SLNSGKEPSS
ENSBTAP00000000601/1-1423 APNQPRQKVG LSSLRGIPIK SLEEIKNLFQ RLSVRRSSSP SLASGKEP-S
ENSTTRP00000003068/1-1320 APNQPRQKIG LSSLHAMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKESSS
bmy_20945T0/1-930 APNQPRQKIG LSSLHGMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKEPSS
BACU008744/1-1422 APNQPRQKIG LSSLHGMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKEPSS
651 700
ENSP00000273859/1-1426 GVPNAFVSRL PLFSRMKPAS PVEEEVSQVC ESPQCSSSSA CCTETEKQHG
ENSBTAP00000000601/1-1423 GVPNAFVSRL SLFNRMKPAS PVEEEISQTS ESLQGSDDSA CPTEIEKQNS
ENSTTRP00000003068/1-1320 GVPNAFVSRL SLFSRMKPAS PVEEEISQSS KSPQGSGNSA CRIETEKQDS
bmy_20945T0/1-930 GVPNAFVSRL SLFSRMKPAS PVEEEMSQTS KSPQGSGNSA CPIEPEKQDG
BACU008744/1-1422 GVPNAFVSRL SLFSRMKPAS PVEEEMSQTS KSPQGSGNSA CPIETEKQDG
701 750
ENSP00000273859/1-1426 DAGLLNGKAE SLPGQPLACN LCYEAESPDE AALVYAARAY QCTLRSRTPE
ENSBTAP00000000601/1-1423 DAGIANGKVE ALPGQPLTSS LCYEAESPDE AALVYAARAY QCTLQSRTPE
ENSTTRP00000003068/1-1320 NVDVTNGKVE SLPGQPLACS LCYEAESPDE AALVYAARAY QCTLQSRTPE
bmy_20945T0/1-930 NVGVTNGKVE SLPDQPLASS LCYEAESPDE AALVYAARAY QCTLQSRTPE
BACU008744/1-1422 NVGVTNGKVE SLPGQPLASS LCYEAESPDE AALVYAARAY QCTLQSRTPE
751 800
ENSP00000273859/1-1426 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPLSNQ VVVYTKGADS
ENSBTAP00000000601/1-1423 QVVVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPLSNQ VVVYTKGADS
ENSTTRP00000003068/1-1320 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS
bmy_20945T0/1-930 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS
BACU008744/1-1422 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS
801 850
ENSP00000273859/1-1426 VIMELLSVAS PDGASLEKQQ MIVREKTQKH LDDYAKQGLR TLCIAKKVMS
ENSBTAP00000000601/1-1423 AIMELLSVAS PDGPGLEKQQ MMIREKTQKH LDDYAKRGLR TLCIAKRVMS
ENSTTRP00000003068/1-1320 VIMELLSVAS PDGPGLEKQQ MMLREKTQQH LDAYTKRGLR TLCVAKRVMS
bmy_20945T0/1-930 VIMELLSVAS PDGPGLEKQQ TMLREKTQQH LDAYTKRGLR TLCVAKRVMS
BACU008744/1-1422 VIMELLSAAS PDGPGLEKQQ MMLREKTQQH LDAYTKRGLR TLCVAKRVMS
851 900
ENSP00000273859/1-1426 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE
ENSBTAP00000000601/1-1423 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE
ENSTTRP00000003068/1-1320 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE
bmy_20945T0/1-930 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE
BACU008744/1-1422 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE
901 950
ENSP00000273859/1-1426 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTQS
ENSBTAP00000000601/1-1423 GVPEAIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPN DKLFVLNTES
ENSTTRP00000003068/1-1320 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPE DKLFILN---
bmy_20945T0/1-930 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTES
BACU008744/1-1422 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTES
951 1000
ENSP00000273859/1-1426 KDACGMLMST ILKELQKKTQ ALPEQVSLSE DLLQPPVP-R DSGLRAGLII
ENSBTAP00000000601/1-1423 KNACEMLMDT ILKELQ-KNP ASPEQASLSA SLHQPPPTLQ GSGLRAALII
ENSTTRP00000003068/1-1320 --ACEMLMDT ILKELQKKNP ASPEQAS-SE AFHQPPAP-P DSGLRAGLVI
bmy_20945T0/1-930 KNGCEMLMDT ILKELQKKNP ASPEQAS-SE ALHQPPAP-P DSGLRAGLII
BACU008744/1-1422 KNACEMLMDT ILKELQKKNP ASPEQAS-SE ALHQPPAA-P DSGLRAGLII
1001 1050
ENSP00000273859/1-1426 TGKTLEFALQ ESLQKQFLEL TSWCQAVVCC RATPLQKSEV VKLVRSHLQV
ENSBTAP00000000601/1-1423 TGKTLEFALQ ESLQKQFLEL TARCQAVVCC RATPLQKSEV VKLVRSHLRV
ENSTTRP00000003068/1-1320 NGRTLEFALQ ESLQRRFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV
bmy_20945T0/1-930 NGKTLEFALQ ESLQRQFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV
BACU008744/1-1422 NGRTLEFALQ ESLQRQFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV
1051 1100
ENSP00000273859/1-1426 MTLAIGDGAN DVSMIQVADI GIGVSGQEGM QAVMASDFAV SQFKHLSKLL
ENSBTAP00000000601/1-1423 MTLAIGDGAN DVSMIQVADI GIGISGQEGM QAVMASDFAV SQFRHLSKLL
ENSTTRP00000003068/1-1320 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL
bmy_20945T0/1-930 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL
BACU008744/1-1422 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL
1101 1150
ENSP00000273859/1-1426 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI
ENSBTAP00000000601/1-1423 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI
ENSTTRP00000003068/1-1320 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI
bmy_20945T0/1-930 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI
BACU008744/1-1422 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI
1151 1200
ENSP00000273859/1-1426 FFNLLFTSAP PVIYGVLEKD VSAETLMQLP ELYRSGQKSE AYLPHTFWIT
ENSBTAP00000000601/1-1423 FFNLLFTSAP PVIYGVLEKD VSAETLMQLP ELYRSGQRSE AYLPLTFWIT
ENSTTRP00000003068/1-1320 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKTE AHLPLTFWIT
bmy_20945T0/1-930 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKSE AYLPLTFWIT
BACU008744/1-1422 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKSE AYLPLTFWIT
1201 1250
ENSP00000273859/1-1426 LLDAFYQSLV CFFVPYFTYQ GSDTDIFAFG NPLNTAALFI VLLHLV-IES
ENSBTAP00000000601/1-1423 LLDAFYQSLV CFFVPYYVYE GSDCRIDTFG YYLRKLSLFI ILYHLSHLES
ENSTTRP00000003068/1-1320 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES
bmy_20945T0/1-930 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES
BACU008744/1-1422 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES
1251 1300
ENSP00000273859/1-1426 KSLTWIHLLV IIGSILSYFL FAIVFGAMCV TCNPPSNPYW IMQEHMLDPV
ENSBTAP00000000601/1-1423 PSMTWIHMLV IAGSILCYFC FALAFGAMCV TCNPPSNPYW IMQEHMADPV
ENSTTRP00000003068/1-1320 KS-TWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW LMQEHMLDPV
bmy_20945T0/1-930 KSLTWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW IMQEHMLDPV
BACU008744/1-1422 KSLTWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW IMQEHMLDPV
1301 1350
ENSP00000273859/1-1426 FYLVCILTTS IALLPRFVYR VLQGSLFPSP ILRAKHFDRL TPEERTKALK
ENSBTAP00000000601/1-1423 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHLDRL PAEERIEALK
ENSTTRP00000003068/1-1320 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHFDRL PAEDRTEALK
bmy_20945T0/1-930 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP VLRAKHFDRL PAEERTEALK
BACU008744/1-1422 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHFDRL PAEERTEALK
1351 1400
ENSP00000273859/1-1426 KWRGAGKMNQ VTSKYANQSA GKSGRRPMPG PSAVFAMKSA SSCAIEQGNL
ENSBTAP00000000601/1-1423 KWRGTGQMDQ LTSKYADHSA VESERIPIYD PSAVFAVMSA TACAVEKGNL
ENSTTRP00000003068/1-1320 KWKGAGKMDQ LTSKYSDHST VKSERIPISD PSAVFAVMSA TSCAVEQGNL
bmy_20945T0/1-930 KWKGAGKMDQ LTSKYSDHSA VKSERIPISD PSAVFAVMSA TSCAVEQGNL
BACU008744/1-1422 KWKEAGKMDQ LTSKYSDHSA VKSERLPISD PSAVFAVMSA TSCAVEQGNL
1401 1450
ENSP00000273859/1-1426 SLCETALDQG YSETKAFEMA GPSKGKES
ENSBTAP00000000601/1-1423 PVCETALDSD FSETKASGMA GPSKD---
ENSTTRP00000003068/1-1320 SVCETALDSD YSENKASGMA GPSKDKSR
bmy_20945T0/1-930 SVCETALDSD YSENKASGMA GPSKD---
BACU008744/1-1422 SVCETALDSD YSENKASGMA GPSKD---