KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:44 2014 Check: 00 .. Name: ENSP00000273859/1-1426 Len: 1428 Check: 3332 Weight: 1.00 Name: ENSBTAP00000000601/1-1423 Len: 1428 Check: 5369 Weight: 1.00 Name: ENSTTRP00000003068/1-1320 Len: 1428 Check: 4916 Weight: 1.00 Name: bmy_20945T0/1-930 Len: 1428 Check: 3637 Weight: 1.00 Name: BACU008744/1-1422 Len: 1428 Check: 4669 Weight: 1.00 // 1 50 ENSP00000273859/1-1426 MTEALQWARY HWRRLIRGAT RDDDSGPYNY SSLLACGRKS SQTPKLSGRH ENSBTAP00000000601/1-1423 MTELLQWARY HWQRPIGRTN TDDDERPYSY SSLLACGGKS SQTPRLAGKH ENSTTRP00000003068/1-1320 ---------- ---------- ---------- ---------- ---------- bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 MTEPLRWARY HWQWLTGGAN RDDHERPYSY SSLLACRGKS SQTPTLSGKH 51 100 ENSP00000273859/1-1426 RIVVPHIQPF KDEYEKFSGA YVNNRIRTTK YTLLNFVPRN LFEQFHRAAN ENSBTAP00000000601/1-1423 RVVVPHLQLF KEEYEKFSGT YVNNRIRTTK YTLLNFVPRN LFEQFHRVAN ENSTTRP00000003068/1-1320 ---------- ---------- ---------- ---------- -------VAN bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 RVVVPHLQPF KDEYEKFSGT YVNNRIRTTK YTLLNFVPRN LFEQFHRVAN 101 150 ENSP00000273859/1-1426 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKIDK ENSBTAP00000000601/1-1423 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKIDK ENSTTRP00000003068/1-1320 LYFLFLVVLN WVPLVEAFQK EITMLPLVVV LTIIAIKDGL EDYRKYKLDK bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 LYFLFLVVLN WVPLVEAFQK EITMLPLVAV LTIIAIKDGL EDYRKYKLDK 151 200 ENSP00000273859/1-1426 QINNLITKVY SRKEKKYIDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD ENSBTAP00000000601/1-1423 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IHLSCNEVIP ADMVLLFSTD ENSTTRP00000003068/1-1320 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 QINNLVTKVY SRKEKKYVDR CWKDVTVGDF IRLSCNEVIP ADMVLLFSTD 201 250 ENSP00000273859/1-1426 PDGICHIETS GLDGESNLKQ RQVVRGYAEQ DSEVDPEKFS SRIECESPNN ENSBTAP00000000601/1-1423 PDGICHIETS GLDGESNLKQ KQVVRRYAEQ DSEVDPEKFS SRIECESPNN ENSTTRP00000003068/1-1320 PDGICHIETS GLDGESNLKQ RQVVRGYTEQ DSEVDPEKFS SRIECESPNN bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 PDGICHIETS GLDGESNLKQ RQVVRGYTEQ DSEIDPEKFS SRIECESPNN 251 300 ENSP00000273859/1-1426 DLSRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVVGI VVYAGHETKA ENSBTAP00000000601/1-1423 DLNRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA ENSTTRP00000003068/1-1320 DLSRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 DLNRFRGFLE HSNKERVGLS KENLLLRGCT IRNTEAVMGI VVYAGHETKA 301 350 ENSP00000273859/1-1426 MLNNSGPRYK RSKLERRANT DVLWCVMLLV IMCLTGAVGH GIWLSRYEKM ENSBTAP00000000601/1-1423 MLNNSGPRYK RSKLERRANT DVLWCVLLLV VMCLTGALGH GIWLSRYENI ENSTTRP00000003068/1-1320 MLNNSGPRYK RSNLERRANT DVLCCVLLLV IMCLTGALGH GIWLSRYENI bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 MLNNSGPRYK RSNLERRANT DVLCCVLLLV IMCLTGALGH GIWLSRYENI 351 400 ENSP00000273859/1-1426 HFFNVPEPDG HIISPLLAGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI ENSBTAP00000000601/1-1423 PFFNIPEPDG HSLSPVLAGF YMFWTMIILL QVLIPISLYV SIEIVKLGQV ENSTTRP00000003068/1-1320 PFFNIPEPDG HVISPVLGGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 PFFNIPEPDG HVISPVLGGF YMFWTMIILL QVLIPISLYV SIEIVKLGQI 401 450 ENSP00000273859/1-1426 YFIQSDVDFY NEKMDSIVQC RALNIAEDLG QIQYLFSDKT GTLTENKMVF ENSBTAP00000000601/1-1423 YFIQSDVDFY NEKMGSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF ENSTTRP00000003068/1-1320 YFIQSDVDFY NEKMDSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF bmy_20945T0/1-930 ---------- ---------- ---------- ---------- ---------- BACU008744/1-1422 YFIQSDVDFY NEKMDSTVQC RALNITEDLG QIQYLFSDKT GTLTENKMVF 451 500 ENSP00000273859/1-1426 RRCSVAGFDY CHEENARRLE SYQEAVSEDE DFIDTVSGSL SNMAKPRAPS ENSBTAP00000000601/1-1423 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSADTPSGSL SNMAKPRALS ENSTTRP00000003068/1-1320 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSADTPSGSL SNMAKPGAPS bmy_20945T0/1-930 ---------- ---------- ---------- ---------- --MAKPRAPS BACU008744/1-1422 RRCSVAGFDY CHEENAKRLE SYQEAASEDE DSPDTPSGSL SNMAKPRAAS 501 550 ENSP00000273859/1-1426 CRTVHNGPLG NKPSNHLAGS SFTLGSGEGA SEVPHSRQAA FSSPIETDVV ENSBTAP00000000601/1-1423 CRTVHSRPLG SISSNHLTGS CFALESREGA SEVPHSRQAA FSSPIETDVV ENSTTRP00000003068/1-1320 CRMVRSGPLG SISSDHLTGS CFALGS--GA SEVPHSRQAA FSSPIETDVV bmy_20945T0/1-930 CRMVRNGPLG SXSSNHLTGS CFALGSGEGA XEVPHSRQAA FSSPIETDVV BACU008744/1-1422 CRMVRNGPLG SVSSNHLTGS CFALGSGEGA SEVPHSRQAA FSSPMETDVV 551 600 ENSP00000273859/1-1426 PDTRLLDKFS QITPRLFMPL DETIQNPPME TLYIIDFFIA LAICNTVVVS ENSBTAP00000000601/1-1423 PDTRLLDKFS QITPLLFTPT DETIPDPPLE TLYIIDFFIA LAICNTVVVS ENSTTRP00000003068/1-1320 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS bmy_20945T0/1-930 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS BACU008744/1-1422 PDTRLLDKFS QITPQLFTPL DETIPDPPLE TLYIIDFFIA LAICNTVVVS 601 650 ENSP00000273859/1-1426 APNQPRQKIR HPSLGGLPIK SLEEIKSLFQ RWSVRRSSSP SLNSGKEPSS ENSBTAP00000000601/1-1423 APNQPRQKVG LSSLRGIPIK SLEEIKNLFQ RLSVRRSSSP SLASGKEP-S ENSTTRP00000003068/1-1320 APNQPRQKIG LSSLHAMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKESSS bmy_20945T0/1-930 APNQPRQKIG LSSLHGMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKEPSS BACU008744/1-1422 APNQPRQKIG LSSLHGMPIK SLEEIKSLFQ RLSVRRSSSP SLASGKEPSS 651 700 ENSP00000273859/1-1426 GVPNAFVSRL PLFSRMKPAS PVEEEVSQVC ESPQCSSSSA CCTETEKQHG ENSBTAP00000000601/1-1423 GVPNAFVSRL SLFNRMKPAS PVEEEISQTS ESLQGSDDSA CPTEIEKQNS ENSTTRP00000003068/1-1320 GVPNAFVSRL SLFSRMKPAS PVEEEISQSS KSPQGSGNSA CRIETEKQDS bmy_20945T0/1-930 GVPNAFVSRL SLFSRMKPAS PVEEEMSQTS KSPQGSGNSA CPIEPEKQDG BACU008744/1-1422 GVPNAFVSRL SLFSRMKPAS PVEEEMSQTS KSPQGSGNSA CPIETEKQDG 701 750 ENSP00000273859/1-1426 DAGLLNGKAE SLPGQPLACN LCYEAESPDE AALVYAARAY QCTLRSRTPE ENSBTAP00000000601/1-1423 DAGIANGKVE ALPGQPLTSS LCYEAESPDE AALVYAARAY QCTLQSRTPE ENSTTRP00000003068/1-1320 NVDVTNGKVE SLPGQPLACS LCYEAESPDE AALVYAARAY QCTLQSRTPE bmy_20945T0/1-930 NVGVTNGKVE SLPDQPLASS LCYEAESPDE AALVYAARAY QCTLQSRTPE BACU008744/1-1422 NVGVTNGKVE SLPGQPLASS LCYEAESPDE AALVYAARAY QCTLQSRTPE 751 800 ENSP00000273859/1-1426 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPLSNQ VVVYTKGADS ENSBTAP00000000601/1-1423 QVVVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPLSNQ VVVYTKGADS ENSTTRP00000003068/1-1320 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS bmy_20945T0/1-930 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS BACU008744/1-1422 QVMVDFAALG PLTFQLLHIL PFDSVRKRMS VVVRHPISNQ VVVYTKGADS 801 850 ENSP00000273859/1-1426 VIMELLSVAS PDGASLEKQQ MIVREKTQKH LDDYAKQGLR TLCIAKKVMS ENSBTAP00000000601/1-1423 AIMELLSVAS PDGPGLEKQQ MMIREKTQKH LDDYAKRGLR TLCIAKRVMS ENSTTRP00000003068/1-1320 VIMELLSVAS PDGPGLEKQQ MMLREKTQQH LDAYTKRGLR TLCVAKRVMS bmy_20945T0/1-930 VIMELLSVAS PDGPGLEKQQ TMLREKTQQH LDAYTKRGLR TLCVAKRVMS BACU008744/1-1422 VIMELLSAAS PDGPGLEKQQ MMLREKTQQH LDAYTKRGLR TLCVAKRVMS 851 900 ENSP00000273859/1-1426 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE ENSBTAP00000000601/1-1423 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE ENSTTRP00000003068/1-1320 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE bmy_20945T0/1-930 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE BACU008744/1-1422 DTEYAEWLRN HFLAETSIDN REELLLESAM RLENKLTLLG ATGIEDRLQE 901 950 ENSP00000273859/1-1426 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTQS ENSBTAP00000000601/1-1423 GVPEAIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPN DKLFVLNTES ENSTTRP00000003068/1-1320 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPE DKLFILN--- bmy_20945T0/1-930 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTES BACU008744/1-1422 GVPESIEALH KAGIKIWMLT GDKQETAVNI AYACKLLEPD DKLFILNTES 951 1000 ENSP00000273859/1-1426 KDACGMLMST ILKELQKKTQ ALPEQVSLSE DLLQPPVP-R DSGLRAGLII ENSBTAP00000000601/1-1423 KNACEMLMDT ILKELQ-KNP ASPEQASLSA SLHQPPPTLQ GSGLRAALII ENSTTRP00000003068/1-1320 --ACEMLMDT ILKELQKKNP ASPEQAS-SE AFHQPPAP-P DSGLRAGLVI bmy_20945T0/1-930 KNGCEMLMDT ILKELQKKNP ASPEQAS-SE ALHQPPAP-P DSGLRAGLII BACU008744/1-1422 KNACEMLMDT ILKELQKKNP ASPEQAS-SE ALHQPPAA-P DSGLRAGLII 1001 1050 ENSP00000273859/1-1426 TGKTLEFALQ ESLQKQFLEL TSWCQAVVCC RATPLQKSEV VKLVRSHLQV ENSBTAP00000000601/1-1423 TGKTLEFALQ ESLQKQFLEL TARCQAVVCC RATPLQKSEV VKLVRSHLRV ENSTTRP00000003068/1-1320 NGRTLEFALQ ESLQRRFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV bmy_20945T0/1-930 NGKTLEFALQ ESLQRQFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV BACU008744/1-1422 NGRTLEFALQ ESLQRQFLEL AARCHAVVCC RATPLQKSEV VKLVRSHLRV 1051 1100 ENSP00000273859/1-1426 MTLAIGDGAN DVSMIQVADI GIGVSGQEGM QAVMASDFAV SQFKHLSKLL ENSBTAP00000000601/1-1423 MTLAIGDGAN DVSMIQVADI GIGISGQEGM QAVMASDFAV SQFRHLSKLL ENSTTRP00000003068/1-1320 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL bmy_20945T0/1-930 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL BACU008744/1-1422 MTLAIGDGAN DVSMIQVADV GIGISGQEGM QAVMASDFAI SQFKHLSKLL 1101 1150 ENSP00000273859/1-1426 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI ENSBTAP00000000601/1-1423 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI ENSTTRP00000003068/1-1320 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI bmy_20945T0/1-930 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI BACU008744/1-1422 LVHGHWCYTR LSNMILYFFY KNVAYVNLLF WYQFFCGFSG TSMTDYWVLI 1151 1200 ENSP00000273859/1-1426 FFNLLFTSAP PVIYGVLEKD VSAETLMQLP ELYRSGQKSE AYLPHTFWIT ENSBTAP00000000601/1-1423 FFNLLFTSAP PVIYGVLEKD VSAETLMQLP ELYRSGQRSE AYLPLTFWIT ENSTTRP00000003068/1-1320 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKTE AHLPLTFWIT bmy_20945T0/1-930 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKSE AYLPLTFWIT BACU008744/1-1422 FFNLLFTSAP PVIYGVLEKD VSAETLMRLP ELYRNGQKSE AYLPLTFWIT 1201 1250 ENSP00000273859/1-1426 LLDAFYQSLV CFFVPYFTYQ GSDTDIFAFG NPLNTAALFI VLLHLV-IES ENSBTAP00000000601/1-1423 LLDAFYQSLV CFFVPYYVYE GSDCRIDTFG YYLRKLSLFI ILYHLSHLES ENSTTRP00000003068/1-1320 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES bmy_20945T0/1-930 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES BACU008744/1-1422 LLDAFYQSLV CFFVPYYTYQ GSDIDIFTFG NPLNTAALFI ILLHLV-IES 1251 1300 ENSP00000273859/1-1426 KSLTWIHLLV IIGSILSYFL FAIVFGAMCV TCNPPSNPYW IMQEHMLDPV ENSBTAP00000000601/1-1423 PSMTWIHMLV IAGSILCYFC FALAFGAMCV TCNPPSNPYW IMQEHMADPV ENSTTRP00000003068/1-1320 KS-TWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW LMQEHMLDPV bmy_20945T0/1-930 KSLTWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW IMQEHMLDPV BACU008744/1-1422 KSLTWIHMLV IVGSILSYFF FALVFGAMCV TCNPPSNPYW IMQEHMLDPV 1301 1350 ENSP00000273859/1-1426 FYLVCILTTS IALLPRFVYR VLQGSLFPSP ILRAKHFDRL TPEERTKALK ENSBTAP00000000601/1-1423 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHLDRL PAEERIEALK ENSTTRP00000003068/1-1320 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHFDRL PAEDRTEALK bmy_20945T0/1-930 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP VLRAKHFDRL PAEERTEALK BACU008744/1-1422 FYLVCVLTTC VALLPRFIYR VLQGSLFPSP ILRAKHFDRL PAEERTEALK 1351 1400 ENSP00000273859/1-1426 KWRGAGKMNQ VTSKYANQSA GKSGRRPMPG PSAVFAMKSA SSCAIEQGNL ENSBTAP00000000601/1-1423 KWRGTGQMDQ LTSKYADHSA VESERIPIYD PSAVFAVMSA TACAVEKGNL ENSTTRP00000003068/1-1320 KWKGAGKMDQ LTSKYSDHST VKSERIPISD PSAVFAVMSA TSCAVEQGNL bmy_20945T0/1-930 KWKGAGKMDQ LTSKYSDHSA VKSERIPISD PSAVFAVMSA TSCAVEQGNL BACU008744/1-1422 KWKEAGKMDQ LTSKYSDHSA VKSERLPISD PSAVFAVMSA TSCAVEQGNL 1401 1450 ENSP00000273859/1-1426 SLCETALDQG YSETKAFEMA GPSKGKES ENSBTAP00000000601/1-1423 PVCETALDSD FSETKASGMA GPSKD--- ENSTTRP00000003068/1-1320 SVCETALDSD YSENKASGMA GPSKDKSR bmy_20945T0/1-930 SVCETALDSD YSENKASGMA GPSKD--- BACU008744/1-1422 SVCETALDSD YSENKASGMA GPSKD---