KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:46 2014 Check: 00 .. Name: ENSP00000398971/1-506 Len: 1284 Check: 2788 Weight: 1.00 Name: ENSBTAP00000000607/1-440 Len: 1284 Check: 2302 Weight: 1.00 Name: ENSTTRP00000006512/1-584 Len: 1284 Check: 8373 Weight: 1.00 Name: BACU002376/1-1148 Len: 1284 Check: 5114 Weight: 1.00 Name: bmy_22652T0/1-557 Len: 1284 Check: 1956 Weight: 1.00 // 1 50 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 MAKGSRDPVV PNRPFATIWN ANTQWCLERH GVDVDISVFD VAVNPGQTFH bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 GPDMTIFYSS QLGTYPYYTS AGEPVFGGLP QNASLAVHLV RTFQDILAAM bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 PASNFSGLAV IDWEAWRPRW AFNWDTKDIY RQRSRALVQG QHPDWPAPWV bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 --------VG PRRSWLSY-- ---------- ---FFSLPEV WL-------- BACU002376/1-1148 EAAAQDQFEG AARAWMAGTL RLGHALRPRG LWGFYGFPDC YNYDFKNPNY bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 TGQCPPGIRA QNDQLGWLWG QSRALYPSIY LPAALEGTKK AQMFVQHRVG bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 EAFRLAVGAG YPDLPVLPYV QIFYDMTNRF LPLESCQAIK EYVDTTLGPF bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 ILNVTSGALL CSQVLCSGHG RCARRPSHPE ARLILSPTSF SIESTPGGGP bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- SPILRNPPSP V--------- BACU002376/1-1148 LTLRGFHPWG MTMQQGLALV LGVALCLGCG QPLLQAPEHP FLVLWNVPSA bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- ---------- BACU002376/1-1148 HCKARFGVHL PLEALGIAAN RGQRFHGQNV TIFYKNQLGF YPYLGPRGTA bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000398971/1-506 ---------- ---------- ---------- ---MAWNSPS RRPVW----- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- --ASVPLSTQ RCRSCVAATE LTNVARGWER RKALWVHSSA BACU002376/1-1148 HNGGIPQAVP LDRHLAWAAY QIRRSLQPGF AGLAVLDWEE WCPLWAGNWG bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 R------ASW A--------- ---------- ---------- ---------- BACU002376/1-1148 RRQVYQTASW AWAQRLFPNL DPQEQLYKAR IGFEQAARAL MEDTLRLGRA bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000398971/1-506 ---------- ---------- ---------- QGGAPREDGG ARGVWLPSSG ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 ---------- --SGGGNPRQ HLGNSSFGRM EGGAPREDGG ARGVWLPSSA BACU002376/1-1148 LQPHGLWGFY HFPACGNGWH GTASNYTGHC HAATLARNTQ LYWLWAASSA bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000398971/1-506 QVSAQRTGRR LVGLEPTPTG SLT------- --PRPPRPVP GMPRAR---- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- -MPRAR---- ENSTTRP00000006512/1-584 QVSTQRIGRR LAGLEPLPAG SLT------- --PRPPRPIP GMPRAR---- BACU002376/1-1148 LFPSIYLPPR LPSAHHQAFV RYRLEEAFRV ALAGHPHPLP VLAYARLTHQ bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000398971/1-506 ---------- ---------- ---------- KGNTLRKGGQ RRGGG----- ENSBTAP00000000607/1-440 ---------- ---------- ---------- KGSAPRRGGQ RRGGG----- ENSTTRP00000006512/1-584 ---------- ---------- ---------- KGSAPRRGGK RSGGG----- BACU002376/1-1148 SSGRFLSQEE CWHLHDYLVS TLGPYVINVT RAAMACSHQR CHGHGRCAWQ bmy_22652T0/1-557 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000398971/1-506 ---------- ---------- ------ARSS AQADSGSSDD EAASEARSTA ENSBTAP00000000607/1-440 ---------- ---------- ------ARSS TQADSGSSED EAASEAHSTT ENSTTRP00000006512/1-584 ---------- ---------- ------ARSS TQADSGSSED EAASEARSTT BACU002376/1-1148 DPGQLEVFLH LEPDGSPGDW ESFSCRARSS TQADSGSSED EAASEARSTT bmy_22652T0/1-557 ---------- ---------- ------ARSS TQADSGSSED EAASEARSTT 751 800 ENSP00000398971/1-506 SECPSLLSTT AEDSLGGDVV DEQGQQEDLE EKLKEYVDCL TDKSAKTRQG ENSBTAP00000000607/1-440 SECASQLSAA AEEGLGGDAV EEQGQQEDLE EKVKEYVDCL TDKSAKTRQG ENSTTRP00000006512/1-584 SECPSLLSTA AEESFGGDAV DEQGQQEDLE EKLKEYVDCL TDKSAKTRQG BACU002376/1-1148 SECPSLLSTA AEESFGGDAV DEQGQQEDLE EKLKEYVDCL TDKSAKTRQG bmy_22652T0/1-557 SECPSLLSTA AEESFGGDAV DEQGQQEDLE EKLKEYVDCL TDKSTKTRQG 801 850 ENSP00000398971/1-506 ALESLRLALA SRLLPDFLLE RRLTLADALE KCLKKGKGEE QALAAAVLGL ENSBTAP00000000607/1-440 ALESLRLALA ARLLPDFLLE RRLTLADALE KCLKKGKGEE QALAAAVLGL ENSTTRP00000006512/1-584 ALESLRLALA AHLLPDFLLE RRLTLADALE KCLKKGKGEE QALAAAVLGL BACU002376/1-1148 ALESLRLALA AHLLSDFLLE RSLTVADALE KCLKKGKGEE QALAAAVLGL bmy_22652T0/1-557 ALESLRLALA AHLLPDFLLE RRLTLADALE KCLKKGKGEE QALAAAVLGL 851 900 ENSP00000398971/1-506 LCVQLGPGPK GEELFHSLQP LLVSVLSDST ASPAARLH-- ---------- ENSBTAP00000000607/1-440 LCVQMGPGPK GEEFFHSLQP LLVSVLSDST ASLAARLH-- ---------- ENSTTRP00000006512/1-584 LCIQLGPGPK GEELFHSLQP LLVSVLSDST ASPAARLH-- ---------- BACU002376/1-1148 LCVQLGPGPK GEELFHSLQP LLVSVLSDST ASPAARLH-- ---------- bmy_22652T0/1-557 LCVQLGPGPK GEELFHSLQP LLVSVLSDST ASPAARLHVS VPCPVTPFLH 901 950 ENSP00000398971/1-506 ---------- ---------- ---------- ---------- --CASALGLG ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---------- --CASALGLG ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---------- --CASALGLG BACU002376/1-1148 ---------- ---------- ---------- ---------- -QCASALGLG bmy_22652T0/1-557 LIPKQRHGFH LPPGSPAPRV SPMAGNPGSP SDHGLALPSS QQCASALGLG 951 1000 ENSP00000398971/1-506 CYVAAADIQD LVSCLACLES VFSRFYGLGG SSTSPVVPAS LHGLLSAALQ ENSBTAP00000000607/1-440 CYVAAADIED LVSCLTCLEG VFSRSCS-GR -GSSPVVPTS LQGLLCAALQ ENSTTRP00000006512/1-584 CYVAATDVQD LVSCLTCLEG IFSRSCGVGG -STAPVVPVS LQGLLCAALQ BACU002376/1-1148 CYVAATDVQD LVSCLTCLEG VFSRSCGVGG -STAPVVPVS LQGLLCAALQ bmy_22652T0/1-557 CYVAATDVQD LVSCLTCLEG VFSRSCGVGG -STAPVVPVS LQGLLCAALQ 1001 1050 ENSP00000398971/1-506 AWALLLTICP STQISHILDR QLPRLPQLLS SESVNLRIAA GETIALLFEL ENSBTAP00000000607/1-440 AWALLLTICP STHIGPILDR QLPRLPQLLS SESVNLRMAA GETIALLFEL ENSTTRP00000006512/1-584 AWALLLTICP SAHISRILDR QLPRLPQLLS SESVNLRMAA GETIALLFEL BACU002376/1-1148 AWALLLTICP SAHISRILDR QLPRLPQLLS SESVNLRMAA GETIALLFEL bmy_22652T0/1-557 AWALLLTICP SAHISRILDR QLPRLPQLLS SESVNLRMAA GETIALLFEL 1051 1100 ENSP00000398971/1-506 ARDLEEEFVY EDMEALCSVL RTLATDSNKY RAKADRRRQR STFRAVLHSV ENSBTAP00000000607/1-440 ARDLEEDFVY EDTEALCSEL RTLATDSNKY RAKADRRRQR STFRAVLHFV ENSTTRP00000006512/1-584 TRDLEEDFVY KDMEALCSTL RTLATDSNKY RAKADRRRQR STFRAVLHSV BACU002376/1-1148 TRDLEEDFVY EDMEALCNML RTLATDSNKY RAKADRRRQR STFRSVLHFV bmy_22652T0/1-557 TRDLEEDFVY EDMEALCSAL RTLATDSNKY RAKADRRRQR STFRSVLHFV 1101 1150 ENSP00000398971/1-506 EGGECEEEIV RFGFEVLYMD SWARHRIYAA FKEVLGSGMH HHLQNNELLR ENSBTAP00000000607/1-440 EGGECEEETI RFGLEVLYVD SWARRRVYAA FKDALGSGMH HHLQNNELLR ENSTTRP00000006512/1-584 EGGECEEETV RFGLEVLYVD SWARRRVYAA FKDALGSGMH HHLQNNELLR BACU002376/1-1148 EGGECEEETV RFGLEVLYVD SWARRRVYAA FKDALGSGMH HHLQNNELLR bmy_22652T0/1-557 EGGECEEETV RFGLEVLYVD SWARRRVYAA FKDALGSGMH HHLQNNELLR 1151 1200 ENSP00000398971/1-506 DIFGLGPVLL LDATALKACK VPRFEKHLYN AAAFKARTKA RSRVRDKRAD ENSBTAP00000000607/1-440 DIFGLGPVLV LDAAALKACK ISRFEKHLYN AAAFRARTKA RSRVRDKRAD ENSTTRP00000006512/1-584 DIFGLGPVLV LDATALKACK ISRFEKHLYN AAAFKARTKA RSRVRDKRAD BACU002376/1-1148 DIFGLGPVLV LDATALKACK ISRFEKHLYN AAAFKARTKA RSRVRDKRAD bmy_22652T0/1-557 DIFGLGPVLV LDATALKACK ISRFEKHLYN AAAFKARTKA RSRVRDKRAD 1201 1250 ENSP00000398971/1-506 IL-------- ---------- ---------- ---------- ---------- ENSBTAP00000000607/1-440 VL-------- ---------- ---------- ---------- ---------- ENSTTRP00000006512/1-584 IL-------- ---------- ---------- ---------- ---------- BACU002376/1-1148 IL-------- ---------- ---------- ---------- ---------- bmy_22652T0/1-557 ILLLNLLSGE GKKGRQLRGQ IRLLYENLTK EVDSQDSQHQ AGEHQQRQQQ 1251 1300 ENSP00000398971/1-506 ---------- ---------- ---------- ---- ENSBTAP00000000607/1-440 ---------- ---------- ---------- ---- ENSTTRP00000006512/1-584 ---------- ---------- ---------- ---- BACU002376/1-1148 ---------- ---------- ---------- ---- bmy_22652T0/1-557 QEAAAAVRGA AAGLGAHRWR QDAQQLIPWL RLLG