KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:47 2014 Check: 00 .. Name: bmy_16596T0/1-381 Len: 564 Check: 2905 Weight: 1.00 Name: ENSP00000272430/1-563 Len: 564 Check: 3844 Weight: 1.00 Name: ENSBTAP00000000619/1-564 Len: 564 Check: 6572 Weight: 1.00 Name: BACU010573/1-564 Len: 564 Check: 6379 Weight: 1.00 Name: ENSTTRP00000012063/1-527 Len: 564 Check: 2730 Weight: 1.00 // 1 50 bmy_16596T0/1-381 MFSGNHRSRV TAARGSALEM QFKHSCCWLS LFCDPLEDT- ---------- ENSP00000272430/1-563 MFSRNHRSRV TVARGSALEM EFKRGRFRLS LFSDLPEDTE LQRKLDHEIR ENSBTAP00000000619/1-564 MFSRNHRSRV TVARGSALEM EFKRGRFRLS LLSDPPEDTE LQRKLDHEIR BACU010573/1-564 MFSRNHRSRV TVARGSALEM EFKRGRFRLS LFCDPPEDTE LQRKLDHEIR ENSTTRP00000012063/1-527 ---------- ---------- ---------- -------DTE LQRKLDHEIR 51 100 bmy_16596T0/1-381 ---------- ---------- ---SVLVGNS RTPGSTGERQ RREAAQVLKK ENSP00000272430/1-563 MREGACKLLA ACSQREQALE ATKSLLVCNS RILSYMGELQ RRKEAQVLGK ENSBTAP00000000619/1-564 MREGACKLLA ACSQREQALE ATKSLLVCNS RILNYMGELQ RRKEAQVLKK BACU010573/1-564 MREGACKLLA ACSQREQALE ATKSLLVCNS RILSYMGELQ RRKEAQVLRK ENSTTRP00000012063/1-527 MREGTCKLLA ACSQREQTLE ATKSLLVCNS RILSYMGELQ RRKEAQVLRK 101 150 bmy_16596T0/1-381 TGQRPPGSGP PAECSPCRSQ VCTSDLRIPL TWKDTD-FKN EGDLHRRAVL ENSP00000272430/1-563 TSRRPSDSGP PAERSPCRGR VCISDLRIPL MWKDTEYFKN KGDLHRWAVF ENSBTAP00000000619/1-564 TGRRPSDSGP PTERSPCRGQ ICISDLRIPL MWKDTEYFKN KGDLHRWAVF BACU010573/1-564 TGRRPSDSGP PAERSPCRGQ VCISDLRIPL MWKDTEYFKN KGDLHRWAVF ENSTTRP00000012063/1-527 TGRRPSDSGP PAERSPCRGQ VCISDLRIPL MWKDTEYFKN KGDLHRWAVF 151 200 bmy_16596T0/1-381 LLLQTGECTQ DTETILADRT LTAISSHNNV LFAEAGPDSE LRLELYGACV ENSP00000272430/1-563 LLLQLGEHIQ DTEMILVDRT LTDISFQSNV LFAEAGPDFE LRLELYGACV ENSBTAP00000000619/1-564 LLLQIGEHIQ DTEMILVDRT LTDISFQNNV LFAEAGPDFE LRLELYGACV BACU010573/1-564 LLLQIGEHIQ DTEMILVDRT LTDISFQNNV LFAEAGPDFE LRLELYGACV ENSTTRP00000012063/1-527 LLLQIGEHIQ DTEMILVDRT LTDISFQNNV LFAEAGPDFE LRLELYGACV 201 250 bmy_16596T0/1-381 EEEGALAGAP KRLATKLSSC LGCSSGRRAQ ASLETARGSA SSPILLPTPA ENSP00000272430/1-563 EEEGALTGGP KRLATKLSSS LGRSSGRRVR ASLDSAGGSG SSPILLPTPV ENSBTAP00000000619/1-564 EEEGALAGAP KRLATKLSSS LGRSSGRRVR ASLETAGGSG SSPILLPTPA BACU010573/1-564 EEEGALAGAP KRLATKLSSS LGRSSGRRVR ASLETAGGSG SSPILLPTPA ENSTTRP00000012063/1-527 EEEGALAGAP KRLATKLSSS LGRSSGRRVR ASLETAGGSG SSPILLPTPA 251 300 bmy_16596T0/1-381 AGGPRYHRLA HTTLTLAAVQ DGFHTHDLTL TSHED-PAWL PLDGSVCCRL ENSP00000272430/1-563 VGGPRYHLLA HTTLTLAAVQ DGFRTHDLTL ASHEENPAWL PLYGSVCCRL ENSBTAP00000000619/1-564 VGGPRYHLLA HTTLTLAAVQ DGFRTHDLTL ATPEESPAWL PLYGSMCCRL BACU010573/1-564 VGGPRYHLLA HTTLTLAAVQ DGFRTHDLTL ASHEENPAWL PLYGSVCCRL ENSTTRP00000012063/1-527 VGGPRYHLLA HTTLTLAAVQ DGFRTHDLTL ASHEENPAWL PLYGSVCCRL 301 350 bmy_16596T0/1-381 VAQSFCMTQP TAGGTLRAQQ AGELQDWVRV HGVLKGTNRF CYHQPGDTDT ENSP00000272430/1-563 AAQPLCMTQP TASGTLRVQQ AGEMQNWAQV HGVLKGTNLF CYRQPEDADT ENSBTAP00000000619/1-564 VAQPLCMTQP TASGTLRVQQ AGEPRDWVQV HGVLKGTNLF CYRQPEDTDT BACU010573/1-564 VAQPFCMTQP TSSGILKVQQ AGELQDWVRV HGVLKGTNLF CYRQPEDTDT ENSTTRP00000012063/1-527 VAQPFCMTQP TASGTLKVQQ TGELQDWVRV HGVLKGTNLF CYRQPEDTDT 351 400 bmy_16596T0/1-381 GEEPLFTVVI NKETQVRAGE LDQAVGRPFT LSISNQYGED E--------- ENSP00000272430/1-563 GEEPLLTIAV NKETRVRAGE LDQALGRPFT LSISNQYGDD EVTHTLQTES ENSBTAP00000000619/1-564 GDEPLFTIAI NKETQVRAGE LDQAASWPFT LSISNRYGEE EVTHTLQAES BACU010573/1-564 GEEPLFTIAI NKETRVRAGE LDQAVGRPFT MSISNQYGED EVTHTLQAES ENSTTRP00000012063/1-527 GEEPLFTIAI NKETRVWAGE LDQAAGRPFT LSISNQYAED EVTHTLQAES 401 450 bmy_16596T0/1-381 ---------- ------GHTR FRQRAGE--- ---PC----- ---------- ENSP00000272430/1-563 REALQSWMEA LWQLFFDMSQ WKQCCDEIMK IETPAPRKPP QALAKQGSLY ENSBTAP00000000619/1-564 RGALQSWMEA LWQLFFDMSQ WKQCCDEIMK IETPAPRKPP QVLAKQGSLY BACU010573/1-564 RGALQSWMEA LWQLFFDMSQ WKQCCDEIMK IETPAPRKPP QVLAKQGSLY ENSTTRP00000012063/1-527 RGALQSWMEA LWQLFFDMSQ WKQCCDEIMK IETPAPRKPP QVLAKQGSLY 451 500 bmy_16596T0/1-381 ---------- ---------- RAGRKL---- ---------- -----CG--- ENSP00000272430/1-563 HEMAIEPLDD IAAVTDILTQ REGARLETPP PWLAMFTDQP ALPNPCSPAS ENSBTAP00000000619/1-564 HEMAIEPLDD IAAVTDILAQ REGARLETPP PWLAVFTDQP ALPGPCSPAS BACU010573/1-564 HEMAIEPLDD IAAVTDILAQ REGTRLETPP PWLAVFTDQP ALPGSCSPAS ENSTTRP00000012063/1-527 HEMAIEPLDD IAAVTDILAQ REGTRLETPP PWLAVFTDQP ALSGPCSPAS 501 550 bmy_16596T0/1-381 ---------- -------SFS LT-------- ---------- ---------- ENSP00000272430/1-563 VAPAPDWTHP LPWGRPRTFS LDAVPPDHSP RA-RSVAPLP PQRSPRTRGL ENSBTAP00000000619/1-564 VAPAPARIHS LPWGRPRTFS LDAVPSDHSP GASRLVAPLP LQRSPRSRGL BACU010573/1-564 VAPTPAQTHS LPWGRPRTFS LDAVPPDHSP GASHSVAPLP PKRSPQSRGL ENSTTRP00000012063/1-527 VAPTPAQTHS LPWGRPRTLS LDAVPPDHSP GASHSVAPLP PKRSPQSRGL 551 600 bmy_16596T0/1-381 ---------- ---- ENSP00000272430/1-563 CSKGQPRTWL QSPV ENSBTAP00000000619/1-564 CSKGPPHTWL QSPV BACU010573/1-564 CSKGPPHTWL QSPV ENSTTRP00000012063/1-527 CSKGPPDTWL QSPV