KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:49 2014 Check: 00 .. Name: bmy_09206T0/1-284 Len: 354 Check: 3820 Weight: 1.00 Name: ENSP00000318966/1-328 Len: 354 Check: 6302 Weight: 1.00 Name: ENSBTAP00000000637/1-309 Len: 354 Check: 4604 Weight: 1.00 Name: BACU015254/1-314 Len: 354 Check: 4182 Weight: 1.00 Name: ENSTTRP00000001584/1-312 Len: 354 Check: 2871 Weight: 1.00 // 1 50 bmy_09206T0/1-284 MKDLEERRGE RR-------- --GRPRQRLR LPLLRRV--- ---------- ENSP00000318966/1-328 MSMLAERRRK QKWAVDPQNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ ENSBTAP00000000637/1-309 MSMLAERRRK QKWAVDPRNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ BACU015254/1-314 MSMLAERRRK QKWAVDPRNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ ENSTTRP00000001584/1-312 --MLAERRRK QKWAVDPRNT AWSNDDSKFG QRMLEKMGWS KGKGLGAQEQ 51 100 bmy_09206T0/1-284 -SCSHVRTNP AQADDTGWGG SVL--EMW-- --EEASLLLF R--------- ENSP00000318966/1-328 GATDHIKVQ- VKNNHLGLGA TINNEDNWIA HQDDFNQLLA ELNTCHGQET ENSBTAP00000000637/1-309 GATDHIKVQ- VKNNHLGLGA TINNEDNWIA HQDDFNQLLA QLNTCHGQET BACU015254/1-314 GATDHIKVQ- VKNNHLGLGA AISNEDNWIA HQDDFNQLLA ELNTCHGQET ENSTTRP00000001584/1-312 GATDHIKVQ- VKNNHLGLGA TINNEDSWIA HQDDFNQLLA ELNTCHGQET 101 150 bmy_09206T0/1-284 ---STKKLPV LFSVLVYFEE ETRYEKKLFS HPMK---GSD HPSHRVRVSE ENSP00000318966/1-328 TDSSDKKEKK SFS----LEE KSKISKNRV- HYMKFTKGKD LSSRSKTDLD ENSBTAP00000000637/1-309 ADSPDNKEKK SFS----LEE KSKISKNRV- HYMKFTKGKD LSSRSQTDLD BACU015254/1-314 ADSSDNKEKK SFS----LEE KSKISKNRV- HYMKFTKGKD LSSRSQTDLD ENSTTRP00000001584/1-312 ADSSDNKEKK SFS----LEE KSKISKNRV- HYMKFTKGKD LSSRSQTDLD 151 200 bmy_09206T0/1-284 C-------EG GSQDHPSPDA AEGTDISPMT TSAFTIREYF ARRMAERKSK ENSP00000318966/1-328 CIFGKRQSKK TPEGDASPST PEENETT--T TSAFTIQEYF AKRMAALKNK ENSBTAP00000000637/1-309 CIFGKRQ-KR TPEDHPSLSA TEETDTSTTT TSAFTIHEYF ARRMAERKSK BACU015254/1-314 CIFGKRQNKK TPEDHPSPDA AEGTDISPMT TSAFTIREYF ARRMAERKSK ENSTTRP00000001584/1-312 CIFGKRQNKK TPEGQPSPDA AEGTDVSPMT TSAFTIREYF ARRMAERKSK 201 250 bmy_09206T0/1-284 AQGTAVGPEA SETPVERKAG KKRKKEAKDK NVENCTHPK- ---------- ENSP00000318966/1-328 PQVPVPGSDI SETQVERKRG KKRNKEATGK DVESYLQPKA KRHTEGKPER ENSBTAP00000000637/1-309 AQGMAAGPEA SETPVERKRG KKRKKEAKDK NVENHIQPK- ---------- BACU015254/1-314 AQGTAVGPEA SETPVERKAG KKRKKESKDK NVENCTHPK- ---------- ENSTTRP00000001584/1-312 AQGTAVGPEA SETPVERKAG KKRKKEAKDK SVENCTHPK- ---------- 251 300 bmy_09206T0/1-284 -------AKK KGDQVEWQLG DPRWDENSGA ASEDGEGCTL SPPYLFPFMN ENSP00000318966/1-328 AEAQERVAKK KSAPAEEQLR GPCWDQSSKA SAQDAGDH-V QPP------E ENSBTAP00000000637/1-309 -------AKK KRNQVECELG DPRWDENPGA PAEAGEGH-V GPL------D BACU015254/1-314 -------AKK KGDQVEWQLG DPRWDENSGA ASEAGEGC-V GPL------D ENSTTRP00000001584/1-312 -------AKK KRDQVEWQLG DPRWDENSGA ASEGEEGC-V APL------D 301 350 bmy_09206T0/1-284 TIKEMFQHRL PERSQPLHQP AAPYLDLSKN FPTVTLFVFR VLQPLQFGAC ENSP00000318966/1-328 GRDFTLKPKK RRGKKKLQKP VEIAED---- -ATLEETLVK KKK--KKDSK ENSBTAP00000000637/1-309 NQDSPPKPKK RKEKEKGAKQ VEAAVD---- -STLDETPVK K----KKGSK BACU015254/1-314 DRDSPSKPRK RKEKKRGQKQ AETAED---- -GTLDETPVK KKRKKKKGSK ENSTTRP00000001584/1-312 DRDPPSRPRN RKEKKRGQKQ AETAED---- -GTLDETPVK KKRKKKKGSK 351 400 bmy_09206T0/1-284 CAGL ENSP00000318966/1-328 ---- ENSBTAP00000000637/1-309 ---- BACU015254/1-314 ---- ENSTTRP00000001584/1-312 ----