KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:49 2014 Check: 00 .. Name: ENSTTRP00000011295/1-449 Len: 455 Check: 204 Weight: 1.00 Name: ENSP00000260508/1-454 Len: 455 Check: 1453 Weight: 1.00 Name: ENSBTAP00000000643/1-455 Len: 455 Check: 1715 Weight: 1.00 Name: bmy_18634T0/1-389 Len: 455 Check: 6191 Weight: 1.00 Name: BACU006383/1-455 Len: 455 Check: 2722 Weight: 1.00 // 1 50 ENSTTRP00000011295/1-449 -MLARARLCT LGSR-KFVKT ICASKILGLS TSAXXXXXXX XXXXXXXXXX ENSP00000260508/1-454 MFLAQRSLCS LSGRAKFLKT ISSSKILGFS TSAKMSLKFT NAKRIEGLDS ENSBTAP00000000643/1-455 MFLAWERLCT LSCRPKFLKT VWASKILGLS TSAKMSLRFK NAKRIEGLDS bmy_18634T0/1-389 MY-------- ---------- ---------- SSQKMSLKFK NAKRIEGLDS BACU006383/1-455 MFLARGRLCT LSSRPKFLKT ICASKILGHS TSAKMSLKFK NAKRIEGLDS 51 100 ENSTTRP00000011295/1-449 XXXXXXXXXX XXXXXXXXXX XXXXISPPVY VKEELSKIAA IDSLNQYTRG ENSP00000260508/1-454 NVWIEFTKLA ADPSVVNLGQ GFPDISPPTY VKEELSKIAA IDSLNQYTRG ENSBTAP00000000643/1-455 NIWIEFTKLA ADPSVVNLGQ GLPDISPPVY VKEELSKIAA IDNLNQYTRG bmy_18634T0/1-389 NVWIEFTKLA ADPSVVNLGQ GLPDISPPVY VKEELSKIAA IDSLNQYTRG BACU006383/1-455 NVWIEFTKLA ADPSVVNLGQ GLPDISPPVY VKEELSKIAA IDSLNQYTRG 101 150 ENSTTRP00000011295/1-449 FGHPSLVKAL SCLYEKFYQN QINPNKEILV TVGAYGSLIY AVQ-LIDEGD ENSP00000260508/1-454 FGHPSLVKAL SYLYEKLYQK QIDSNKEILV TVGAYGSLFN TIQALIDEGD ENSBTAP00000000643/1-455 FGHPSLVKAL SCLYEKFYHN KINPNEEILV TVGAYGSLFN AIQGLIDEGD bmy_18634T0/1-389 FGHPSLVKAL SCLYEKFYQN QINPNKEILV TVGAYGSLFN AIQGLIDEGD BACU006383/1-455 FGHPSLVKAL SCLYEKFYQN QINPNKEILV TVGAYGSLFN AIQGLIDEGD 151 200 ENSTTRP00000011295/1-449 EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KLVDGKKWSS SDWTLDPQEL ENSP00000260508/1-454 EVILIVPFYD CYEPMVRMAG ATPVFIPLRS KPVYGKRWSS SDWTLDPQEL ENSBTAP00000000643/1-455 EVIVIVPFFD CYESMVRMAG ATPVFVPLRC KPVDGKKCSS SDWTLDPQEL bmy_18634T0/1-389 E--------- ---------- ---------- KPVDGKKWSS SDWTLDPQEL BACU006383/1-455 EVIVIVPFYD CYEPMVRMAG AIPIFIPLRS KPLDGKKWSS SDWTLDPQEL 201 250 ENSTTRP00000011295/1-449 ASKFNSKTKA IILNTPHNPL GKVYTKEELQ VIADLCIKYD TLCISDEVYE ENSP00000260508/1-454 ESKFNSKTKA IILNTPHNPL GKVYNREELQ VIADLCIKYD TLCISDEVYE ENSBTAP00000000643/1-455 ASKFNSKTKA IILNTPHNPL GKVYTKEELQ VIADLCIKYD TLCISDEVYE bmy_18634T0/1-389 ASKFNSKTKA IILNTPHNPL GKVYTKEELQ VIADLCIKYD TLCISDEVYE BACU006383/1-455 ASKFNSKTKA IILNTPHNPL GKVYTKEELQ VIADLCIKYD TLCISDEVYE 251 300 ENSTTRP00000011295/1-449 WLVYTGNKHF KIATFPGMWE RTITIGSAGK TFSVT---LG WSIGPKHLIK ENSP00000260508/1-454 WLVYSGNKHL KIATFPGMWE RTITIGSAGK TFSVTGWKLG WSIGPNHLIK ENSBTAP00000000643/1-455 WLVYTGNKHF KIATFPGMWE RTITIGSAGK TFSVTGWKLG WSIGPKHLIK bmy_18634T0/1-389 WLVYSGNKHF KIATFPGMWE RTITIGSAGK TFSVTGWKLG WSIGPKHLIK BACU006383/1-455 WLVYTGNKHF KIATFPGMWE RTITIGSAGK TFSVTGWKLG WSIGPKHLIK 301 350 ENSTTRP00000011295/1-449 HLQTVQQNTV YTCATPLQEA LAQALWIDIK RMDDPECYFN SLPKELEVKR ENSP00000260508/1-454 HLQTVQQNTI YTCATPLQEA LAQAFWIDIK RMDDPECYFN SLPKELEVKR ENSBTAP00000000643/1-455 HLQTVQQNTV YTCATPLQEA LAQAFWIDIK RMDDPECYFN SLPKELEVKR bmy_18634T0/1-389 HLQTVQQNTV YTCATPLQEA LAQALWIDIK RMDDPECYFN SLPKELEVKR BACU006383/1-455 HLQTVQQNTV YTCATPLQEA LAQALWIDIK RMDDPECYFN SLPKELEVKR 351 400 ENSTTRP00000011295/1-449 NRMVHLLESV GLKPIVPDGG YFIIADVSLL DTDLSDMKNS NEPYDYKFVK ENSP00000260508/1-454 DRMVRLLESV GLKPIVPDGG YFIIADVSLL DPDLSDMKN- NEPYDYKFVK ENSBTAP00000000643/1-455 DRMVHLLESV GLKSIVPDGG YFIIADVSLL DVDLLDMKDS NEPYDYKFVK bmy_18634T0/1-389 NRMVHLLESV GLKPIVPDGG YFIIADVSLL DTDLSDMKNS NEPYDYKFVK BACU006383/1-455 NRMVHLLESV GLKPIVPDGG YFIIADVSLL DTDLSDMKNS NEPYDYKFVK 401 450 ENSTTRP00000011295/1-449 WMTKNKKLSA IPVSAFCNAE TKLQFEKFVR FCFIKKDSTL DAAEEIIKAW ENSP00000260508/1-454 WMTKHKKLSA IPVSAFCNSE TKSQFEKFVR FCFIKKDSTL DAAEEIIKAW ENSBTAP00000000643/1-455 WMIKNKKLSA IPVSAFCNAE TKSQFEKFVR FCFIKKDSTL DAAEEIIKAW bmy_18634T0/1-389 WMTKNKKLSA IPVSAFCNAE TKLQFEKFVR FCFIKVSSLF ---------Y BACU006383/1-455 WMTKNKKLSA IPVSAFCNAE TKLQFEKFVR FCFIKKDSTL DAAEEIIKAW 451 500 ENSTTRP00000011295/1-449 SRQKF ENSP00000260508/1-454 SVQKS ENSBTAP00000000643/1-455 SRQNS bmy_18634T0/1-389 SKTHL BACU006383/1-455 SRQKF