KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:52 2014 Check: 00 .. Name: ENSTTRP00000011072/1-1218 Len: 1249 Check: 5057 Weight: 1.00 Name: BACU010294/1-1158 Len: 1249 Check: 8222 Weight: 1.00 Name: ENSP00000263519/1-1220 Len: 1249 Check: 2597 Weight: 1.00 Name: bmy_19613T0/1-1248 Len: 1249 Check: 4046 Weight: 1.00 Name: ENSBTAP00000000677/1-1206 Len: 1249 Check: 5657 Weight: 1.00 // 1 50 ENSTTRP00000011072/1-1218 MGDVANSSVE FHPKPRQQRE APHAGGFGCT LAELRSLMEL RGAEALQKVQ BACU010294/1-1158 MGDVANSSIE FHPKPQQQRE APHAGGFGCT LAELRSLMEL RGAEALQKVQ ENSP00000263519/1-1220 MGDMANSSIE FHPKPQQQRD VPQAGGFGCT LAELRTLMEL RGAEALQKIE bmy_19613T0/1-1248 MGDVANSSIE FHPKPQQQRE APHAGGFGCT LAELRSLMEL RGAEALQKVQ ENSBTAP00000000677/1-1206 MGDVANSSIE FHPKPQQQRE APHAGGFGCT LAELRSLMEL RGAEALQKVQ 51 100 ENSTTRP00000011072/1-1218 ETYGDVGGLC RRLKTSPTEG LADNTNDLEK RRQIYGQNFI PPKQPKTFLQ BACU010294/1-1158 ETYGDVGGLC RRLKTSPTEG LADNTNDLEK RRQIYGQNCL PPKQPKTFLQ ENSP00000263519/1-1220 EAYGDVSGLC RRLKTSPTEG LADNTNDLEK RRQIYGQNFI PPKQPKTFLQ bmy_19613T0/1-1248 ETYGDVGGLC RRLKTSPTEG LADNTNDLEK RRQIYGQNFI PPKQPKTFLQ ENSBTAP00000000677/1-1206 EAYGDVSGLC RRLKTSPTEG LADNANDLEK RRQIYGQNFI PPKQPKTFLQ 101 150 ENSTTRP00000011072/1-1218 LVWEALQDVT LIILEVAAIV SLGLSFYAPP GEESEACGNV SAGAEDEGEA BACU010294/1-1158 LVWEALQDVT LIILEVAAIV SLGLSFYAPP GEESEACGNV SAGAEDEGEA ENSP00000263519/1-1220 LVWEALQDVT LIILEVAAIV SLGLSFYAPP GEESEACGNV SGGAEDEGEA bmy_19613T0/1-1248 LVWEALQDVT LIILEVAAIV SLGLSFYAPP GEESEACGNV SAGAEDEGEA ENSBTAP00000000677/1-1206 LVWEALQDVT LIILEVAAIV SLGLSFYAPP GEESEACGNV SAGAEDEGEA 151 200 ENSTTRP00000011072/1-1218 EAGWIEGAAI LLSVICVVLV TAFNDWSKEK QFRGLQSRIE QEQKFTVIRN BACU010294/1-1158 EAGWIEGAAI LLSVICVVLV TAFNDWSKEK QFRGLQSRIE QEQKFTVIRN ENSP00000263519/1-1220 EAGWIEGAAI LLSVICVVLV TAFNDWSKEK QFRGLQSRIE QEQKFTVIRN bmy_19613T0/1-1248 EAGWIEGAAI LLSVICVVLV TAFNDWSKEK QFRGLQSRIE QEQKFTVIRN ENSBTAP00000000677/1-1206 EAGWIEGAAI LLSVICVVLV TAFNDWSKEK QFRGLQSRIE QEQKFTVIRN 201 250 ENSTTRP00000011072/1-1218 GQLLQVPVAA LVVGDIAQVK YGDLLPADGV LIQGNDLKID ESSLTGESDH BACU010294/1-1158 GQLLQVPVAA LVVGDIAQVK YGDLLPADGV LIQGNDLKID ESSLTGESDH ENSP00000263519/1-1220 GQLLQVPVAA LVVGDIAQVK YGDLLPADGV LIQANDLKID ESSLTGESDH bmy_19613T0/1-1248 GQLLQVPVAA LVVGDIAQVK YGDLLPADGV LIQGNDLKID ESSLTGESDH ENSBTAP00000000677/1-1206 GQLLQVPVAT LVVGDIAQVK YGDLLPADGV LIQGNDLKID ESSLTGESDH 251 300 ENSTTRP00000011072/1-1218 VRKSADKDPM LLSGTHVMEG SG-MVVTAVG VNSQTGIIFT LLXXXXXXXX BACU010294/1-1158 VRKSADKDPM LLSGTHVMEG SGRMVVTAVG VNSQTGIIFT LLGAGGQEEE ENSP00000263519/1-1220 VRKSADKDPM LLSGTHVMEG SGRMVVTAVG VNSQTGIIFT LLGAGGEEEE bmy_19613T0/1-1248 VRKSADKDPM LLSGTHVMEG SGRMVVTAVG VNSQTGIIFT LLGAGGEEEE ENSBTAP00000000677/1-1206 VRKSTDKDPM LLSGTHVMEG SGRMVVTAVG VNSQTGIIFT LLGAGGEEEE 301 350 ENSTTRP00000011072/1-1218 XXXXXXKQQD GAMESSQTKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU010294/1-1158 KKDKKGKQQD GAMESSQTKA KKQDGAVAME MQPLKSAEGG EMEEREKKKA ENSP00000263519/1-1220 KKDKKGKQQD GAMESSQTKA KKQDGAVAME MQPLKSAEGG EMEEREKKKA bmy_19613T0/1-1248 KKDKKGKQQD GAMESSQTKA KKQDGAVAME MQPLKSAEGG EMEEREKKKA ENSBTAP00000000677/1-1206 KKDK------ --------KA KKQDGAVAME MQPLKSAEGG EMEEREKKKA 351 400 ENSTTRP00000011072/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU010294/1-1158 NVPKKEKSVL QGKLTKLAVQ IGKAGLVMSA ITVIILVLYF VIEAFVVEGR ENSP00000263519/1-1220 NAPKKEKSVL QGKLTKLAVQ IGKAGLVMSA ITVIILVLYF VIETFVVEGR bmy_19613T0/1-1248 NVPKKEKSVL QGKLTKLAVQ IGKAGLVMSA ITVIILVLYF VIETFVVDGR ENSBTAP00000000677/1-1206 NVPKKEKSVL QGKLTKLAVQ IGKAGLVMSA ITVIILVLYF VIETFVIDGR 401 450 ENSTTRP00000011072/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU010294/1-1158 AWLAECTPVY VQYFVKFFII GVTVLVVAVP EGLPLAVTIS LAYSVKKMMR ENSP00000263519/1-1220 TWLAECTPVY VQYFVKFFII GVTVLVVAVP EGLPLAVTIS LAYSVKKMMK bmy_19613T0/1-1248 AWLAECTPVY VQYFVKFFII GVTVLVVAVP EGLPLAVTIS LAYSVKKMMR ENSBTAP00000000677/1-1206 MWLAECTPVY VQYFVKFFII GVTVLVVAVP EGLPLAVTIS LAYSVKKMMR 451 500 ENSTTRP00000011072/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXTGTLTT NRMTVVQSYL GDTHYKEVPA BACU010294/1-1158 DNNLVRHLDA CETMGNATAI CSDKTGTLTT NRMTVVQSHL GDTHYKEVPA ENSP00000263519/1-1220 DNNLVRHLDA CETMGNATAI CSDKTGTLTT NRMTVVQSYL GDTHYKEIPA bmy_19613T0/1-1248 DNNLVRHLDA CETMGNATAI CSDKTGTLTT NRMTVVQSYL GDTHYKEVPA ENSBTAP00000000677/1-1206 DNNLVRHLDA CETMGNATAI CSDKTGTLTT NRMTVVQSYL GDTHYKEVPA 501 550 ENSTTRP00000011072/1-1218 PSALTPKILD LLVHAISINS AYTTKIL--- --------PP EKEGALPRQV BACU010294/1-1158 PSALTPKILD LLVHAISINS AYTTKIL--- --------PP EKEGALPRQV ENSP00000263519/1-1220 PSALTPKILD LLVHAISINS AYTTKIL--- --------PP EKEGALPRQV bmy_19613T0/1-1248 PSALTPKILD LLVHAISINS AYTTKILVSW EQGQAKAGPP EKEGALPRQV ENSBTAP00000000677/1-1206 PSALTPKILD ILVHAISINS AYTTKIL--- --------PP EKEGALPRQV 551 600 ENSTTRP00000011072/1-1218 GNKTECALLG FVLDLKQDFQ PVREQIPEDK LYKVYTFNSV RKSMSTVIRM BACU010294/1-1158 GNKTECALLG FVLDLKRDFQ PVREQIPEDK LYKVYTFNSV R--------- ENSP00000263519/1-1220 GNKTECALLG FVLDLKRDFQ PVREQIPEDK LYKVYTFNSV RKSMSTVIRM bmy_19613T0/1-1248 GNKTECALLG FVLDLKRDFQ PVREQIPEDK LYKVYTFNSV RKSMSTVIRT ENSBTAP00000000677/1-1206 GNKTECALLG FVLDLKRDFQ PVREQIPEDK LYKVYTFNSV RKSMSTVIRT 601 650 ENSTTRP00000011072/1-1218 PDSGFRLFSK GASEILLKKC TNILNSNGEL RSFRPRDRDD MVQKIIEPMA BACU010294/1-1158 ---------- --------KC TNILNSNGEP RSFRPRDRDD MVKKVIEPMA ENSP00000263519/1-1220 PDGGFRLFSK GASEILLKKC TNILNSNGEL RGFRPRDRDD MVRKIIEPMA bmy_19613T0/1-1248 PDGGFRLFSK GASEILLKKC TNTLNSNGEL RSFRARDRDD VVKKVIEPMA ENSBTAP00000000677/1-1206 PDGGFRLFSK GASEILLKKC TNILNSNGEL RSFRPRDRDD MVKKIIEPMA 651 700 ENSTTRP00000011072/1-1218 CDGLRTICIA YRDFSAAQEP DWDNENEVVG DLTCIAVVGI EDPVRPE--- BACU010294/1-1158 CDGLRTICIA YRDFSAAQEP DWDDENEVVG NLTCIAVVGI EDPVRPEEAR ENSP00000263519/1-1220 CDGLRTICIA YRDFSAGQEP DWDNENEVVG DLTCIAVVGI EDPVRPE--- bmy_19613T0/1-1248 CDGLRTICIA YRDFSAAQEP DWDNEDEVVG GLTCIAVVGI EDPVRPEEAR ENSBTAP00000000677/1-1206 CDGLRTICIA YRDFTAAQEP DWDNENEVVG DLTCIAVVGI EDPVRPE--- 701 750 ENSTTRP00000011072/1-1218 ---------- ----VPEAIR KCQRAGITVR MVTGDNINTA RAIAAKCGII BACU010294/1-1158 SCRLEGPLLL GLRQVPEAIR KCQRAGITVR MVTGDNINTA RAIAAKCGII ENSP00000263519/1-1220 ---------- ----VPEAIR KCQRAGITVR MVTGDNINTA RAIAAKCGII bmy_19613T0/1-1248 SCRLEGPLLL GLRQVPEAIR KCQRAGITVR MVTGDNINTA RAIAAKCGII ENSBTAP00000000677/1-1206 ---------- ----VPEAIR KCQRAGITVR MVTGDNINTA RAIAAKCGII 751 800 ENSTTRP00000011072/1-1218 QPGEDFLCLE GKEFNRRIRN EKGEIEQERL D-VWPKLRVL ARSXXXXXXX BACU010294/1-1158 QPGEDFLCLE GKEFNRRIRN EKGEIEQERL DKVWPKLSVL ARSSPTDKHT ENSP00000263519/1-1220 QPGEDFLCLE GKEFNRRIRN EKGEIEQERL DKVWPKLRVL ARSSPTDKHT bmy_19613T0/1-1248 QPGEDFLCLE GKEFNRRIRN EKGEIEQERL DKVWPKLRVL ARSSPTDKHT ENSBTAP00000000677/1-1206 QPGEDFLCLE GKEFNRRIRN EKGEIEQERL DKVWPKLRVL ARSSPTDKHT 801 850 ENSTTRP00000011072/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG IAGTDVAKEA BACU010294/1-1158 LVKGIIDSNT GEQRQVVAVT GDGTNDGPAL KKADVGFAMG IAGTDVAKEA ENSP00000263519/1-1220 LVKGIIDSTT GEQRQVVAVT GDGTNDGPAL KKADVGFAMG IAGTDVAKEA bmy_19613T0/1-1248 LVKGIIDSNT GEQRQVVAVT GDGTNDGPAL KKADVGFAMG IAGTDVAKEA ENSBTAP00000000677/1-1206 LVKGIIDSNT GEQRQVVAVT GDGTNDGPAL KKADVGFAMG IAGTDVAKEA 851 900 ENSTTRP00000011072/1-1218 SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVIVAFTGAC BACU010294/1-1158 SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVIVAFTGAC ENSP00000263519/1-1220 SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVIVAFTGAC bmy_19613T0/1-1248 SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVIVAFTGAC ENSBTAP00000000677/1-1206 SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVIVAFTGAC 901 950 ENSTTRP00000011072/1-1218 ITQDSPLKAV QMLWVNLIMD TFASLALATE PPTESLLLRK PYGRDKPLIS BACU010294/1-1158 ITQDSPLKAV QMLWVNLIMD TFASLALATE PPTESLLLRK PYGRDKPLIS ENSP00000263519/1-1220 ITQDSPLKAV QMLWVNLIMD TFASLALATE PPTESLLLRK PYGRDKPLIS bmy_19613T0/1-1248 ITQDSPLKAV QMLWVNLIMD TFASLALATE PPTESLLLRK PYGRDKPLIS ENSBTAP00000000677/1-1206 ITQDSPLKAV QMLWVNLIMD TFASLALATE PPTESLLLRK PYGRDKPLIS 951 1000 ENSTTRP00000011072/1-1218 RTMMKNILGH AAYQLTTIFT LLFVGELFFD IDSGRNAPLH SPPSEHYTII BACU010294/1-1158 RTMMKNILGH AVYQLTIIFT LLFVGELFFD IDSWRNAPLH SPPSEHYTII ENSP00000263519/1-1220 RTMMKNILGH AVYQLAIIFT LLFVGELFFD IDSGRNAPLH SPPSEHYTII bmy_19613T0/1-1248 RTMMKNILGH AVYQLTIIFT LLFVGELFFD IDSGRNAPLH SPPSEHYTII ENSBTAP00000000677/1-1206 RTMMKNILGH AVYQLTIIFT LLFVGELFFD IDSGRNAPLH SPPSEHYTII 1001 1050 ENSTTRP00000011072/1-1218 FNTFVMMQLF NEINARKIHG ERNVFHGIFG NPIFCTIVLG TFVIQIVIVQ BACU010294/1-1158 FNTFVMMQLF NEINARKIHG ERNIFHGIFG NPIFCTIVLG TFAIQIVIVQ ENSP00000263519/1-1220 FNTFVMMQLF NEINARKIHG ERNVFDGIFS NPIFCTIVLG TFGIQIVIVQ bmy_19613T0/1-1248 FNTFVMMQLF NEINARKIHG ERNVFHGIFG NPIFCTIVLG TFAIQIVIVQ ENSBTAP00000000677/1-1206 FNTFVMMQLF NEINARKIHG ERNVFHGIFS NPIFCTIVLG TFAIQIVIVQ 1051 1100 ENSTTRP00000011072/1-1218 FGGKPFSCSP LSTEQWLWCL FVGVGELVWG QVIATIPTSQ LKCLKEAGHG BACU010294/1-1158 FGGKPFSCSP LSTEQWLWCL FVGVGELVWG QVIATIPTSQ LKCLKEAGHG ENSP00000263519/1-1220 FGGKPFSCSP LSTEQWLWCL FVGVGELVWG QVIATIPTSQ LKCLKEAGHG bmy_19613T0/1-1248 FGGKPFSCSP LSTEQWLWCL FVGVGELVWG QVIATIPTSQ LKCLKEAGHG ENSBTAP00000000677/1-1206 FGGKPFSCSP LSTEQWLWCL FVGIGELVWG QVIATIPTSQ LKCLKEAGHG 1101 1150 ENSTTRP00000011072/1-1218 PGKDEMTDEE LAEGEEEIDH AERELRRGQI LWFRGLNRIQ TQIRVVKAF- BACU010294/1-1158 PGKDEVTDEE LAEGEEEIDH AERELRRGQI LWFRGLNRIQ TQMEVVSTFK ENSP00000263519/1-1220 PGKDEMTDEE LAEGEEEIDH AERELRRGQI LWFRGLNRIQ TQIRVVKAF- bmy_19613T0/1-1248 PGKDEMTDEE LAEGEEEIDH AERELRRGQI LWFRGLNRIQ TQIRVVKAF- ENSBTAP00000000677/1-1206 PGKDEMTDEE LAEGEEEIDH AERELRRGQI LWFRGLNRIQ TQIRVVKAF- 1151 1200 ENSTTRP00000011072/1-1218 RSSLYEGLEK PESKTSIHNF MATPEFLIND YTHNIPLIDD TDVDENEERL BACU010294/1-1158 RSGSFQGAVR --RRSSVLSQ L--------- --HDV----- -------TNL ENSP00000263519/1-1220 RSSLYEGLEK PESKTSIHNF MATPEFLIND YTHNIPLIDD TDVDENEERL bmy_19613T0/1-1248 RSSLYEGLEK PESKTSIHNF MATPEFLIND YTHNIPLIDD TDVDENEERL ENSBTAP00000000677/1-1206 RSSLYEGLEK PESKTSIHNF MATPEFLIND YTHNIPLIDD TDVDENEERL 1201 1250 ENSTTRP00000011072/1-1218 RAPPPPSPNQ NNNAIDSGVY LTTRGTKSAT SSVFSSRPGS PLHSVETSL BACU010294/1-1158 STP------- ---------- --THVILSAA NPTSAAGSES --------- ENSP00000263519/1-1220 RAPPPPSPNQ NNNAIDSGIY LTTHVTKSAT SSVFSSSPGS PLHSVETSL bmy_19613T0/1-1248 RAPPPPSPNQ NNNAIDSGVY LTTRGTKSAT SSVFSSGPGS PLHSVETSL ENSBTAP00000000677/1-1206 RAPPPPSPNQ NNNAIDSGVY LTTHGTKSAT SSLFSSRPGS PLHSVETSL