KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:55 2014 Check: 00 .. Name: bmy_17881T0/1-646 Len: 768 Check: 6278 Weight: 1.00 Name: BACU005901/1-442 Len: 768 Check: 1982 Weight: 1.00 Name: ENSTTRP00000000370/1-610 Len: 768 Check: 8405 Weight: 1.00 Name: ENSP00000418751/1-612 Len: 768 Check: 4791 Weight: 1.00 Name: ENSBTAP00000000688/1-385 Len: 768 Check: 4019 Weight: 1.00 // 1 50 bmy_17881T0/1-646 VGRGGEDGRG GSRGYDGGAE WVEEASVRAV RSQRNIVGIH DYHLXYKMTN BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 ---------- ---------- ---------- ---------- -------MSN ENSP00000418751/1-612 ---------- ---------- ---------- ---------- -------MSN ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- -------MSN 51 100 bmy_17881T0/1-646 SHPLHRFTAV GEIDHS---- --------GA NIFEHYYMVE CDNLSL---- BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 SHPLRPFTAV GEIDHVHILS EHIGALLIGE EYGDVTFVVE KKRFPAHRVI ENSP00000418751/1-612 SHPLRPFTAV GEIDHVHILS EHIGALLIGE EYGDVTFVVE KKRFPAHRVI ENSBTAP00000000688/1-385 SHPLRPFTAV GEIDHVHILS EHIGALLIGE EYGDVTFVVE KKRFPAHRVI 101 150 bmy_17881T0/1-646 ---------- -------KSK SLSRTPLQKH SQCYLHTSIQ --YTRQARLT BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 LAARCQYFRA LLYGGMRESQ PEAEIPLQDT TAEAFTMLLK YIYT-RATLT ENSP00000418751/1-612 LAARCQYFRA LLYGGMRESQ PEAEIPLQDT TAEAFTMLLK YIYTGRATLT ENSBTAP00000000688/1-385 LAARCQYFRA LLYGGMRESQ PEAEIPLEDT TAEAFTMLLK YIYTGRATLT 151 200 bmy_17881T0/1-646 DKKEE----- ---------- --EDSTSEYL CTKLNIQNVC MTFDVASLYS BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 DEK-EVLLDF LSLAHKYGFP ELEDSTSEYL CTILNIQNVC MTFDVASLYS ENSP00000418751/1-612 DEKEEVLLDF LSLAHKYGFP ELEDSTSEYL CTILNIQNVC MTFDVASLYS ENSBTAP00000000688/1-385 DEKEEVLLDF LSLAHKYGFP ELEDSTSEYL CTILNIQNVC MTFDVASLYS 201 250 bmy_17881T0/1-646 LPKLTCMCSM FMDRNAQEVF SSQGFLSLSK TALLNIVLKG SFAAXEKDIF BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 LPKLTSMCCM FMDRNAQEVL SSEGFLSLSK AALLNIVLRD SFAXXXXXXX ENSP00000418751/1-612 LPKLTCMCCM FMDRNAQEVL SSEGFLSLSK TALLNIVLRD SFAAPEKDIF ENSBTAP00000000688/1-385 LPKLTCMCCM FMDRNAQEVL SSEGFLSLSK TALLNIVLRD SFAAPEKDIF 251 300 bmy_17881T0/1-646 LALLNLCKHN SKENHAEIMQ AVCLPLISLT ELLNDVRPLG LLSPDAILDA BACU005901/1-442 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000370/1-610 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXDAILDA ENSP00000418751/1-612 LALLNWCKHN SKENHAEIMQ AVRLPLMSLT ELLNVVRPSG LLSPDAILDA ENSBTAP00000000688/1-385 LALLNWCKHN SNENHAEIMQ AVRLPLMSLT ELLNVVRPSG LLSPDAILDA 301 350 bmy_17881T0/1-646 IKVQSESRDM DLNYRSMLIP EENIATMKYG AQVVKGQLKS ALSDGDAQNY BACU005901/1-442 ---------- ---------- ------MKYA AQVVKGQLKS ALSDGDTQNY ENSTTRP00000000370/1-610 IKVRSESRDM DLNYRGMLIP EENIATMKYG AQVVKGELKS ALLDGDTQNY ENSP00000418751/1-612 IKVRSESRDM DLNYRGMLIP EENIATMKYG AQVVKGELKS ALLDGDTQNY ENSBTAP00000000688/1-385 IKVRSESRDM DLNYRGMLIP EENIATMKYG AQVVKGELKS ALLDGDTQNY 351 400 bmy_17881T0/1-646 DLDHGFSRHL IDDDCRSGIE IKLCQPSISN HIRILLLDRD NXSHSYSIEV BACU005901/1-442 DLDHGFSRHL IDDDCSSGIE IKLCQPSISN HIRILLLDRD SLSHSYFIEV ENSTTRP00000000370/1-610 DLDHGFSRHP IDDDCRSGIE IKLGQPSIIN HIRILLWDRD SRSYSYFIEV ENSP00000418751/1-612 DLDHGFSRHP IDDDCRSGIE IKLGQPSIIN HIRILLWDRD SRSYSYFIEV ENSBTAP00000000688/1-385 DLDHGFSRHP IDDDCRSGIE IKLGQPSIIN HIRILLWDRD SRSYSYFIEV 401 450 bmy_17881T0/1-646 SMDELDWIRV IDHSQYLGRS WQKLYLPAHV SRYIQIVGTH NTVNKIFQIV BACU005901/1-442 SMDELDWIRV IDHSQYLGRS WQTLYLPAHV SRYIQIVGTH NTVNKNFQIV ENSTTRP00000000370/1-610 SMDELDWIRV IDHSQYLCRS WQKLYFPARV CRYIRIVGTH NTVNKIFHIV ENSP00000418751/1-612 SMDELDWVRV IDHSQYLCRS WQKLYFPARV CRYIRIVGTH NTVNKIFHIV ENSBTAP00000000688/1-385 SMDELDWIRV IDHSQYLCRS WQKLYFPARV CR-------- ---------- 451 500 bmy_17881T0/1-646 ALERMFTNKT FTLEEGLIGP MENVATIADC ASVVEGVSRS QNTLLNKDTK BACU005901/1-442 ALEHMFTNKT FTLEEGLIVP MENVATIADC ASVIEGVSRS QNTLLNKDTK ENSTTRP00000000370/1-610 AFECMFTNKT FTLEKGLLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418751/1-612 AFECMFTNKT FTLEKGLIVP MENVATIADC ASVIEGVSRS RNALLNGDTK ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_17881T0/1-646 NYDWDSGHTC HQLGSGTVVV QPAQPYMIGS KRLLLWDCED QSYSYYVEVS BACU005901/1-442 NYDWDSGYTC HQLGSGTIVV QPAQPYMIRS RWLLLWDCED QSYSYHVEVS ENSTTRP00000000370/1-610 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLLLWDCDD RSYSYYVEVS ENSP00000418751/1-612 NYDWDSGYTC HQLGSGAIVV QLAQPYMIGS IRLLLWDCDD RSYSYYVEVS ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_17881T0/1-646 TNQQQWTMVA ERTKVACKSW QSVTVERQPA SFIRIVGTHN TANEVFHYVH BACU005901/1-442 TNQQQWTIVA ERTKVACKSW QSVTVERQPA SFIRIVGTHN TANEVFHYVH ENSTTRP00000000370/1-610 TNQQQWTMVA DRTKVTCKSW QSVTFERRPA SFIRIVGTHN TANEVFHCVH ENSP00000418751/1-612 TNQQQWTMVA DRTKVSCKSW QSVTFERQPA SFIRIVGTHN TANEVFHCVH ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_17881T0/1-646 FECPEQP--- ------EGGK QGHQPGQSAA RPASPVGPQL QLTAFQPRLQ BACU005901/1-442 FECPEQQSSQ KEENSGELGN RGHQPGQSAA RPARPVGPQR QLTAFQPRLQ ENSTTRP00000000370/1-610 FECPEQQSNQ KEENSEQSGT GDTSPASQQP DPHALQAPSG N--------- ENSP00000418751/1-612 FECPEQQSSQ KEENSEESGT GDTSLAGQQL DSHALRAPSG S--------- ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_17881T0/1-646 LVLSHPAAPI KVVHVWSDSG GPRWRRN--- ---------- ---------- BACU005901/1-442 LVLSHPAAPI KVVHVWSDSA TQLPHTSPDD FLLSLAHAHL TLGFDHDHSL ENSTTRP00000000370/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000418751/1-612 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_17881T0/1-646 ---------- ---------- ---------- -------CVL PKPGSLWTTP BACU005901/1-442 GRTSLSPVSL AQSVPQLTVR FVLASRRPVR VVESHIRSIP QLPGETSESF ENSTTRP00000000370/1-610 ---------- ---------- ---------- -------SLH SSPGSNSYSA ENSP00000418751/1-612 ---------- ---------- ---------- -------SLP SSPGSNSRSP ENSBTAP00000000688/1-385 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_17881T0/1-646 HPSLRGADLA AETDTEQ- BACU005901/1-442 SPTTFKASAV GPRLNFLA ENSTTRP00000000370/1-610 NRQHQ----- -------- ENSP00000418751/1-612 NRQHQ----- -------- ENSBTAP00000000688/1-385 ---------- --------