KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:57 2014 Check: 00 .. Name: BACU005252/1-955 Len: 957 Check: 1486 Weight: 1.00 Name: bmy_17041T0/1-421 Len: 957 Check: 9329 Weight: 1.00 Name: ENSP00000454919/1-631 Len: 957 Check: 2739 Weight: 1.00 Name: ENSTTRP00000009842/1-629 Len: 957 Check: 6652 Weight: 1.00 Name: ENSBTAP00000000703/1-550 Len: 957 Check: 9871 Weight: 1.00 // 1 50 BACU005252/1-955 MLAPLGPQAL SLDLGPPGAW FALPIVRCLR KTPLRKQSFM GNSRNSWSHA bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 ---------- ----MPRPAL SVTSFCHRLG KRE-RKQSFM GNSGNSWSHT ENSTTRP00000009842/1-629 ---------- ----MPRSAL SVISFCHRLG KQE-RKQSFM GNSSNSWSHA ENSBTAP00000000703/1-550 ---------- ----MPRSAL SVISFCHRLG KQE-RKRSFM GNSSNSWSHT 51 100 BACU005252/1-955 PFPKLELGLG SRPVAPREPP ACSICLERPR EPISLDCGHD FCPRCFSTHR bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 PFPKLELGLG PQPMAPRELP TCSICLERLR DPISLDCGHD FCIRCFSTHR ENSTTRP00000009842/1-629 PFPKLDLGLG SRPVASREPP ACSICLERPR EPISLDCGHD FCPRCFSTHR ENSBTAP00000000703/1-550 PFPKLELGLG SRPTAPREPP ACSICLERPR EPISLDCGHD FCPRCFSTHR 101 150 BACU005252/1-955 VPGCGPPCCP ECRKTCQRKK GLRGLGERMR LLPRRSLS-P ALQETCAVRA bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 LPGCEPPCCP ECRKICKQKR GLRSLGEKMK LLPQRPLP-P ALQETCPVRA ENSTTRP00000009842/1-629 VPGCGPPCCP ECRKTCKQ-K GLRGLGERMR LLPRRPLP-P RSQETCAVRA ENSBTAP00000000703/1-550 VPGCGPPCCP ECRKTCKRRK GLRGLGERMR LLPQRPLPAA ALQETCAVRA 151 200 BACU005252/1-955 EPLLLVRVNA SGGLILRMGA INRCLKHPLA RDTPVCLLAV LGERYSGKTF bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 EPLLLVRINA SGGLILRMGA INRCLKHPLA RDTPVCLLAV LGEQHSGKSF ENSTTRP00000009842/1-629 QPLLLVRVNA SGGLILRMGA VNRCLKHPLA RDTPVCLLAV LGERHSGKTF ENSBTAP00000000703/1-550 EPLLLVRINA SGGLILRMGA INRCLKHPLA RDTPVCLLAV LGGPHSGKTF 201 250 BACU005252/1-955 LLNHLLQGLP GLEPGEGGWP RGG-GSRQGF RWGANSLTRG LWMWSHPFLL bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 LLNHLLQGLP GLESGEGGRP RGGEASLQGC RWGANGLARG IWMWSHPFLL ENSTTRP00000009842/1-629 LLNHLLQGLP GLEPGEGGWP REG-CSGQGF RWGANSLTRG LWMWSHPFLL ENSBTAP00000000703/1-550 LLNHLLQGLP GLASGEGSWP RSA-GSGQGF RWGANGLSRG IWMWSHPFLL 251 300 BACU005252/1-955 GKEGRKVAVF LVDTGDAMSP ELSRETRTQL CALTSMLSSY QILTAFQELK bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 GKEGKKVAVF LVDTGDAMSP ELSRETRIKL CALTTMLSSY QILSTSQELK ENSTTRP00000009842/1-629 GKEGRKVAVF LVDTGDAMSP ELSRETRTRL CALTSMLSSY QILTAFQELK ENSBTAP00000000703/1-550 GKEGRKVAVF LVDTGDVMSP ELSRETRTRL CALTSMLSSY QILTASQELK 301 350 BACU005252/1-955 DTDLEYLEMF VHVAEVMGRH YGMVPIQVRC PFLDSSPQTP TPRLLLPAPL bmy_17041T0/1-421 --------MF VHVAEVMGRH YGMVPI---- ---------- ---------- ENSP00000454919/1-631 DTDLDYLEMF VHVAEVMGKH YGMVPI---- ---------- ---------- ENSTTRP00000009842/1-629 DTDLEYLEMF VHVAEVMGRH YGMVPI---- ---------- ---------- ENSBTAP00000000703/1-550 DTDLEHLETF VHVAEVMGRH YGMVPI---- ---------- ---------- 351 400 BACU005252/1-955 LFQHLDLLVR DSSHPSKAGQ GHVGDIIKKS SGKYPKVQGL LQGRRARCCL bmy_17041T0/1-421 --QHLDLLVR DSSHPSKAGQ GHVGDIIKKS SGKYPKVQGL LQGRRARCCL ENSP00000454919/1-631 --QHLDLLVR DSSHPNKAGQ GHVGNIFQRL SGRYPKVQEL LQGKRARCCL ENSTTRP00000009842/1-629 --QHLDLLVR DSSHPSKAGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000000703/1-550 --QHLDLLVR DSSHPSKAWQ GHVGDVIQKS SGK------- ---------- 401 450 BACU005252/1-955 LPAPRRRWAS KGHGSPGGEC PRSKAXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 LPAPRRRWAS KGHGSPGDTD DDA-GHLRAY VADVLSAAPL HAKSRCQGYW ENSP00000454919/1-631 LPAPGRRRMN QGHASPGDTD DDFRHLLGAY VSDVLSAAPQ HAKSRCQGYW ENSTTRP00000009842/1-629 XXXXXXXXXX XXXXXXXXDT DDAAGHLRAY VADVLSAAPL HAKSRCQGYW ENSBTAP00000000703/1-550 ---------- ---------- ---------- ---------- ---------Y 451 500 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 SEGRPAARWD RRLLTGQQLA QEIKNLSG-- WMGRTGPGCA SPDEVWGYGE ENSP00000454919/1-631 NEGRAVARGD RRLLTGQQLA QEIKNLSG-- WMGRTGPGFT SPDE------ ENSTTRP00000009842/1-629 SEGRPAARGD RRLLTGQQLA QEIKNLSG-- WMGRTGPGCA SPDE------ ENSBTAP00000000703/1-550 ----PKVQG- --LLQGRRAR CYLLPAPGRR WASR---GHG SXEGLVG--- 501 550 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 DAGGRRAGRP EMERGARRRP AGERREAAGL CCGQMAAQLH DLRTVEAAKK ENSP00000454919/1-631 ---------- ---------- ---------- ----MAAQLH DLRKVEAAKR ENSTTRP00000009842/1-629 ---------- ---------- ---------- ----MAAQLH DLRTVEAAKK ENSBTAP00000000703/1-550 ---------- ---------- ---------- ---------- ---------- 551 600 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 EFEEYLRQQV SLGPRQARRP AEEGPVFGRG RPASGGRHLG SRSGPLLSRP ENSP00000454919/1-631 EFEEYVR--- ---------- ---------- ---------- ---------- ENSTTRP00000009842/1-629 EFEEYLR--- ---------- ---------- ---------- ---------- ENSBTAP00000000703/1-550 --DTWLR--- ---------- ---------- ---------- --VRPLLPPL 601 650 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 SQDVATKRIF SALRVLPDTM RNLLSAQKDA LLARHGAALL CTGREQTLEA ENSP00000454919/1-631 QQDVATKRIF SALRVLPDTM RNLLSTQKDA ILARHGVALL CKGRDQTLEA ENSTTRP00000009842/1-629 QQDVATKRIF SALRVLPDTM RNLLSTQKDA LLARHGAALL CTGREQTLEA ENSBTAP00000000703/1-550 SQDAATKRIF SALRVLPDTM RNLLSAQKDT LLARHGATLL CTGREQTLEA 651 700 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 LEAELQAEAK AFMDSYTVRF CGHLAAVGGA VGAGLMGLAG GVVGAGMAAA ENSP00000454919/1-631 LEAELQATAK AFMDSYTMRF CGHLAAVGGA VGAGLMGLAG GVVGAGMAAA ENSTTRP00000009842/1-629 LEAELQAEAK AFMDSYTVRF CGHLAAVGGA VGAGLMGLAG GVVGAGMAAA ENSBTAP00000000703/1-550 LEAELQAEAK AFMDSYTVRF CGHLAAVGGA VGAGLMGLAG GVVGAGMAAA 701 750 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 ALAAEAGMVA AGAAV----- ---------- ---------- ---------- ENSP00000454919/1-631 ALAAEAGMVA AGAAV----- ---------- ---------- ---------- ENSTTRP00000009842/1-629 ALAAEAGMVA AGAAV----- ---------- ---------- ---------- ENSBTAP00000000703/1-550 ALAAEAGMVA AGAAV----- ---------- ---------- ---------- 751 800 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009842/1-629 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000703/1-550 ---------- ---------- ---------- ---------- ---------- 801 850 BACU005252/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17041T0/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000454919/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009842/1-629 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000703/1-550 ---------- ---------- ---------- ---------- ---------- 851 900 BACU005252/1-955 XXXXXXQELR WGPRGRPWSG EAWVPGWRPG RAAWRRRRTR ECRRGTGSPC bmy_17041T0/1-421 ---------- -GATGAAVVG ---------- ---------- ---------- ENSP00000454919/1-631 ---------- -GATGAAVVG ---------- ---------- ---------- ENSTTRP00000009842/1-629 ---------- -GATGAAVVG ---------- ---------- ---------- ENSBTAP00000000703/1-550 ---------- -GATGAAVVG ---------- ---------- ---------- 901 950 BACU005252/1-955 CRRSDRPPDA PGKESCRGRG GMGAALPGAP VCHTTLVERP IRVVTETRGG bmy_17041T0/1-421 ---------- ---------G GVGAGLAATV GCMEK--EED EGVQEGDREP ENSP00000454919/1-631 ---------- ---------G GVGAGLAATV GCMEK--EED ERLLEGDREP ENSTTRP00000009842/1-629 ---------- ---------G GVGAGLAATV GCMER--EED ERVQEGDRAP ENSBTAP00000000703/1-550 ---------- ---------G GVGAGLAATV GCMEK--EED ERVQEGDREP 951 1000 BACU005252/1-955 LRAGGRV bmy_17041T0/1-421 LLQEE-- ENSP00000454919/1-631 LLQEE-- ENSTTRP00000009842/1-629 LLQEE-- ENSBTAP00000000703/1-550 LLQEE--