KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:59 2014 Check: 00 .. Name: ENSP00000267889/1-1401 Len: 1420 Check: 1290 Weight: 1.00 Name: ENSBTAP00000000723/1-1403 Len: 1420 Check: 98 Weight: 1.00 Name: ENSTTRP00000010026/1-1397 Len: 1420 Check: 7359 Weight: 1.00 Name: bmy_00639T0/1-1405 Len: 1420 Check: 4204 Weight: 1.00 Name: BACU008535/1-1317 Len: 1420 Check: 1107 Weight: 1.00 // 1 50 ENSP00000267889/1-1401 MDGDSSSSSG GSGPAPGPGP EGEQRPEGEP LAPDGGSPDS TQTKAVPPEA ENSBTAP00000000723/1-1403 MDGG-GGSSS SSDPVPGPGP EGEQRPEGEL LAPEGSSPDR SQSKAVAPEA ENSTTRP00000010026/1-1397 ------SGSG SYDPAPGPGL KGEQRTEGEP LAPDGRSPDR SQSKAVAPEA bmy_00639T0/1-1405 ---SLSKAAA RCGPPLSP-- --------TP FFPASSLP-R SQSKAVAPEA BACU008535/1-1317 MDG--GSGSG SNDPAPGPGP EGQQRPEGEP LAPDGSSPDR SQSKAVAPEA 51 100 ENSP00000267889/1-1401 SPERSCSLHS CPLEDPSSSS GPPPTTSTLQ PVGPSSPLAP AHFTYPRALQ ENSBTAP00000000723/1-1403 SPERSCSLHS CPLEDPSSSS GPPPATSTLQ PVGPSSPLAP AHFTYPRVQQ ENSTTRP00000010026/1-1397 SPERSGALHS CPLEDPSSSS GPPPGTSTLH PVGPSSPLAP AHFTYPRAPQ bmy_00639T0/1-1405 SPERSCALHS CPLEDPSSSS GPPPATSILH PVGPSSPLAP AHFTYPRAPQ BACU008535/1-1317 SPERSCALHS WPLEDPSSSS GPPPATSTLH PVGPSSPLAP AHFTYPRAPQ 101 150 ENSP00000267889/1-1401 EYQGGSSLPG LGDRAALCSH GSSLSPSPAP SQRDGTWKPP AVQHHVVSVR ENSBTAP00000000723/1-1403 EYRGGSSLPG LGDQAGLCSH GCSLSPSPAP SQRDGTWKPA SVQHHVVSVR ENSTTRP00000010026/1-1397 EYRGGSSLPG LGDRAALCSH GSSLSPSPAP SQHDGAWKPA SVQHHVVSVR bmy_00639T0/1-1405 EYRGGSSLPG LGDRAALCSH GSSLSPSPAP SQHDGAWKPA SVQHHVVSVR BACU008535/1-1317 EYRGGSSLPG LGDRAALCSH GSSLSPSPAP SQHDGAWKPA SVQHHVVSVR 151 200 ENSP00000267889/1-1401 QERAFQMPKS YSQLIAEWPV AVLMLCLAVI FLCTLAGLLG ARLPDFSKPL ENSBTAP00000000723/1-1403 QERAFRMPKS YSQLIAECPV AVLLLCLAFI LLCTLAGLLG GQLPDFSKPL ENSTTRP00000010026/1-1397 QVRAFQMPKS YSQLIAEWPV AVLLLCLAVI LLCTLAGLLG GQLPDFSKPL bmy_00639T0/1-1405 QVRAFQMPKS YSQLIAEWPV AVLLLCLAVI LLCTLAGLLG GQLPDFSKPL BACU008535/1-1317 QVRAFQMPKS YSQLIAEWPV AVLLLCLAVI LLCTLAGLLG GQLPDFSKPL 201 250 ENSP00000267889/1-1401 LGFEPRDTDI GSKLVVWRAL QALTGPRKLL FLSPDLELNS SSSHNTLRP- ENSBTAP00000000723/1-1403 LGFEPRDTDI GRKLVVWRAL QALTGPRKLL SLSPDLELNS SNPHTTLSPA ENSTTRP00000010026/1-1397 LGFEPRDTDI GRKLVVWRAL QSLTGPKKLL SLSPDLELNS SNPHTTLSP- bmy_00639T0/1-1405 LGFEPRDTDI GRKLVVWRAL QSVTGPKKLL SLSPDLELNS SNPHTTLSP- BACU008535/1-1317 LGFEPRDTDI GRKLVVWRAL QSVTGPKKLL SLSPDLELNS SNPHTTLSP- 251 300 ENSP00000267889/1-1401 APRGSAQESA VRPRRMVEPL EDRRQENFFC GPP------- ---------E ENSBTAP00000000723/1-1403 TPWSSAQEGM VRPWRMVESL EDRGQDSFFC GPP------- ---------E ENSTTRP00000010026/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX------- ---------X bmy_00639T0/1-1405 TPWSSAQEGM VRPRRMVEPL EARGQESFFC GPPGPGPGAK GVSSGWCVAE BACU008535/1-1317 TPWSSAQEGM VRPWRMVEPL EARGQESFFC GPP------- ---------E 301 350 ENSP00000267889/1-1401 KSYAKLVFMS TSSGSLWNLH AIHSMCRMEQ DQIRSHTSFG ALCQRTAANQ ENSBTAP00000000723/1-1403 KSYAQLVFMS TSAGSLWNLH AIHSMCRMEH DQIRSHPSFG ALCQRTAANE ENSTTRP00000010026/1-1397 KSYAQLVFMS TSAGSLWNLH AIHSMCRMEQ DQVRSHTSFG ALCQRTAANE bmy_00639T0/1-1405 KSYAQLVFMS TSAGSLWNLH AIHSMCRMEQ DQVRSHTSFG ALCQRTAANE BACU008535/1-1317 KSYAQLVFMS TSAGSLWNLH AIHSMCRMEQ DQVRSHTSFG ALCQRTAANE 351 400 ENSP00000267889/1-1401 CCPSWSLGNY LAVLSNRSSC LDTTQADAAR TLALLRTCAL YYHSGALVPS ENSBTAP00000000723/1-1403 CCPSWSLGNF VAVLSNRSSC LDITQADTTR TLALLRACAL YYHRGALVPS ENSTTRP00000010026/1-1397 CCPSWSLGNY VAVLSNRSSC LDTTQADTAR TLALLRACAL YYHRGALVPS bmy_00639T0/1-1405 CCPSWSLGNY VAVLSNRSSC LDTTQADTAR TLALLRACAL YYHRGALVPS BACU008535/1-1317 CCPSWSLGNY VAVLSNRSSC LDTTQADAAR TLALLRACAL YYHRGALVPS 401 450 ENSP00000267889/1-1401 CLGPGQNKSP RCAQVPTKCS QSSAIYQLLH FLLDRDFLSP QTTDYQVPSL ENSBTAP00000000723/1-1403 CLGPGNDKPP RCTQVPTKCS QSSAVYQLLH FLLDRDFLSP QTADYQVPSL ENSTTRP00000010026/1-1397 CLGPGKDKPP RCAQVPTKCS RSSAVYQLLH FLLDRDFLSP QTADYQVPSL bmy_00639T0/1-1405 CLGPGKDKPP RCAQVPTKCS RSSAVYQLLH FLLDRDFLSP QTADYQVPSL BACU008535/1-1317 CLGPGKDKPP RCAQVPTKCS RSSAVYQLLH FLLDRDFLSP QTADYQVPSL 451 500 ENSP00000267889/1-1401 KYSLLFLPTP KGASLMDIYL DRLATPWGLA DNYTSVTGMD LGLKQELLRH ENSBTAP00000000723/1-1403 KYSLLFLPTL KGASMMGIYL DRLAMPWGLS DNYTSVTGMD LGLKQELLRH ENSTTRP00000010026/1-1397 KYSLLFLPTP KGASMMGIYL DRLAVPWGLS DNYTSITGMD LGLKQELLRH bmy_00639T0/1-1405 KYSLLFLPTP KGASMMGIYL DRLAVPWGLS DNYTSITGMD LGLKQELLRH BACU008535/1-1317 KYSLLFLPTP KGASMMGIYL DRLAVPWGLS DNYTSITGMD LGLKQELLRH 501 550 ENSP00000267889/1-1401 FLVQDTVYPL LALVAIFFGM ALYLRSLFLT LMVLLGVLGS LLVAFFLYQV ENSBTAP00000000723/1-1403 YLAQDTVYPL LALAAIFLSI ALYLRSLFLT LMVLLGVLGS LLVAFFLYRV ENSTTRP00000010026/1-1397 YLAQDTVYPL LALAAIFLSI ALYLRSLFLT LMVLLGVLGS LLLAFFLYRV bmy_00639T0/1-1405 YLAQDTVYPL LALAAIFLSI ALYLRSLFLT LMVLLGVLGS LLLAFFLYRV BACU008535/1-1317 YLAQDTVYPL LALAAIFLSI ALYLRSLFLT LMVLLGVLGS LLLAFFLYRV 551 600 ENSP00000267889/1-1401 AFRMAYFPFV NLAALLLLSS VCANHTLIFF DLWRLSKSQL PSGGLAQRVG ENSBTAP00000000723/1-1403 AFRMAYFPFV NLAALVLLSS VCANHTLIFF DLWRLSKSQL PSGGLAQRVR ENSTTRP00000010026/1-1397 AFRMAYFPFV NLAALVLLSS VCANHTLIFF DLWRLSKSQL PSGGLAQRVG bmy_00639T0/1-1405 AFRMAYFPFV NLAALVLLSS VCANHTLIFF DLWRLSKSQL PSGGLAQRVG BACU008535/1-1317 AFRMAYFPFV NLAALVLLSS VCANHTLIFF DLWRLSKSQL PSGGLAQRVG 601 650 ENSP00000267889/1-1401 RTMHHFGYLL LVSGLTTSAA FYASYLSRLP AVRCLALFMG TAVLVHLALT ENSBTAP00000000723/1-1403 RTMHHFGYLL LVSGLTTGAA FYASYLSRLP AVRCFALYMG TAVLAHLALT ENSTTRP00000010026/1-1397 RTMHHFGYLL LVSGLTTGAA FYASYLSRLP AVRCFALYMG TAVLAHLALT bmy_00639T0/1-1405 RTMHHFGYLL LVSGLTTGAA FYASYLSRLP AVRCFALYMG TAVLAHLALT BACU008535/1-1317 RTMHHFGYLL LVSGLTTGAA FYASYLSRLP AVRCFALYMG TAVLAHLALT 651 700 ENSP00000267889/1-1401 LVWLPASAVL HERYLARGCA RRARGRWEGS APRRLLLALH RRLRGLRRAA ENSBTAP00000000723/1-1403 LAWLPSSAVL HERYLARGCA SQARGPWAGS APRRLALALH RRLRGLRRAA ENSTTRP00000010026/1-1397 LAWLPSSAVL HERYLARGCA ARARGPWGGS APRRLALALH RRLRGLRRAA bmy_00639T0/1-1405 LAWLPSSAVL HERYLARGCA ARARGPWGGS APRRLALALH RRLRGLRRAA BACU008535/1-1317 LAWLPSSAVL HERYLARGCA ARARG----- ---------- ---------- 701 750 ENSP00000267889/1-1401 AGTSRLLFQR LLPCGVIKFR YIWICWFAAL AAGGAYIAGV SPRLRLPTLP ENSBTAP00000000723/1-1403 ASTSRLLFQR LLPCGVIKFR YIWICWFAAL AAGGAYIAGV SPRLRLPTLP ENSTTRP00000010026/1-1397 ASTSRLLFQR LLPCGVIKFR YIWICWFAAL AAGGAYITGV SPRLRLPTLP bmy_00639T0/1-1405 ASTSRLLFQR LLPCGVIKFR YIWICWFAAL AAGGAYIAGV SPRLRLPTLP BACU008535/1-1317 ---------- ---------- ---------- ---------- ---------P 751 800 ENSP00000267889/1-1401 PPGGQVFRPS HPFERFDAEY RQLFLFEQLP QGEGGHMPVV LVWGVLPVDT ENSBTAP00000000723/1-1403 PPRGQVFRPS HPFERFDAEY RQQFLFERLP QGEGGHMPVV LVWGILPVDT ENSTTRP00000010026/1-1397 PPRGQVFRPS HPFERFDAEY RQQFLFERLP QGEGGHMPVV LVWGILPVDT bmy_00639T0/1-1405 PPRGQVFRPS HPFERFDAEY RQQFLFERLP QGEGGHMPVV LVWGILPVDT BACU008535/1-1317 PP-------- --FERVGAGY RQQFLFERLP QGEGGHMPVV LVWGILPVDT 801 850 ENSP00000267889/1-1401 GDPLDPRSNS SLVRDPAFSA SGPEAQRWLL ALCHRARNQS FFDTLQEGWP ENSBTAP00000000723/1-1403 GDPLDPRSNS SLVSDPAFSA SGPEAQRWLL ALCHGARNQS FFGAQPEGWP ENSTTRP00000010026/1-1397 GDPLDPRSNS SLVSDPAFSA SGPEAQRWLL ALCQGARNQS FFGAQPEGWP bmy_00639T0/1-1405 GDPLDPRSNS SLVSDPAFSA SGPEAQRWLL ALCQGARNQS FFGAQPEGWP BACU008535/1-1317 GDPLDPRSNS SLVSDPAFSA SSPEAQRWLL ALCQGARNQS FFGAQPEGWP 851 900 ENSP00000267889/1-1401 TLCFVETLQR WMESPSCARL GPDLCCGHSD FPWAPQFFLH CLKMMALEQG ENSBTAP00000000723/1-1403 TLCFVEALQH WMESPGCARL GPGLCCGHSG FPWAPQLFLH CLKMMALEQG ENSTTRP00000010026/1-1397 TLCFVEALRR WMESPGCARL GPGPCCGHSG FPWAPQLFLH CLKMMALEQG bmy_00639T0/1-1405 TLCFVEALRR WMESPGCARL GPGLCCGHSG FPWAPQLFLH CLKMMALEQG BACU008535/1-1317 TLCFVEALRR WMESPGCARL GPGLCCGHSG FPWAPQLFLH CLKMMALEQG 901 950 ENSP00000267889/1-1401 PDGTQDLGLR FDAHGSLAAL VLQFQTNFRN SPDYNQTQLF YNEVSHWLAA ENSBTAP00000000723/1-1403 PEGPRDLGPR FNTQGGLAAL VLQFQTNCPY SPDYSQAHHF YTEVNHWLAA ENSTTRP00000010026/1-1397 PESTRDLGAR FNTQGGLAAL VLQFQTNFQY SPDYSQAHHF YTEVSYWLAA bmy_00639T0/1-1405 PESTRDLGAR FNTQGGLAAL VLQFQTNFQY SPDYSQAHHF YTEVSYWLAA BACU008535/1-1317 PESTRDLGAR FNTQGGLAAL VLQFQTNFQY SPDYSQAHHF YTEVSYWLAA 951 1000 ENSP00000267889/1-1401 ELGMAPPGLR RGWFTSRLEL YSLQHSLSTE PAVVLGLALA LAFATLLLGT ENSBTAP00000000723/1-1403 ELGRAPPGLR RGWFTSRLEL YSLQHSLSTE PAVVLGLALA LAFATLLLGT ENSTTRP00000010026/1-1397 ELGRAPPGLR RGWFTSRLEL YSLQHSLSTE PAVVLGLALA LAFATLLLGT bmy_00639T0/1-1405 ELGRAPPGLR RGWFTSRLEL YSLQHSLSTE PAVVLGLALA LAFATLLLGT BACU008535/1-1317 ELGRAPPGLR RGWFTSRLEL YSLQHSLSTE PAVVLGLALA LAFATLLLGT 1001 1050 ENSP00000267889/1-1401 WNVPLSLFSV AAVAGTVLLT VGLLVLLEWQ LNTAEALFLS ASVGLSVDFT ENSBTAP00000000723/1-1403 WNVPLSLFSV AAVAGTVLLT VGLLVLLEWQ LNTAEALFLS ASVGLSVDFT ENSTTRP00000010026/1-1397 WNVPLSLFSV AAVAGTVLLT VGLLVLLEWQ LNTAEALFLS ASVGLSVDFT bmy_00639T0/1-1405 WNVPLSLFSV AAVAGTVLLT VGLLVLLEWQ LNTAEALFLS ASVGLSVDFT BACU008535/1-1317 WNVPLSLFSV AAEAGTVLLT VGLLVLLEWQ LNTAEALFLS ASVGLSVDFT 1051 1100 ENSP00000267889/1-1401 VNYCISYHLC PHPDRLSRVA FSLRQTSCAT AVGAAALFAA GVLMLPATVL ENSBTAP00000000723/1-1403 VNYCISYHLC PHPDRLSRVA FSLRQTSCAT AVGAAALFAA GVLMLPATVL ENSTTRP00000010026/1-1397 VNYCISYHLC PHPDRLSRVA FSLRQTSCAT AVGAAALFAA GVLMLPASVL bmy_00639T0/1-1405 VNYCISYHLC PHPDRLSRVA FSLRQTSCAT AVGAAALFAA GVLMLPASVL BACU008535/1-1317 VNYCISYHLC PHPDRLSRVA FSLRQTSCAT AVGAAALFAA GVLMLPASVL 1101 1150 ENSP00000267889/1-1401 LYRKLGIILM MVKCVSCGFA SFFFQSLCCF FGPEKNCGQI LWPCAHLPWD ENSBTAP00000000723/1-1403 LYRKLGIVLM MVKCVSCGFA SFFFQSLCCF FGPEKNCGQI LWPCAHLPWD ENSTTRP00000010026/1-1397 LYRKLGIVLM MVKCVSCGFA SFFFQSLCCF FGPEKNCGQI LWPCAHLPWD bmy_00639T0/1-1405 LYRKLGIVLM MVKCVSCGFA SFFFQSLCCF FGPEKNCGQI LWPCAHLPWD BACU008535/1-1317 LYRKLGIVLM MVKCVSCGFA SFFFQSLCCF FGPEKNCGQI LWPCAHLPWD 1151 1200 ENSP00000267889/1-1401 AGTGDPGGEK AGRPRPGSVG GMPGSCSEQY ELQPLARRRS PSFDTSTATS ENSBTAP00000000723/1-1403 SRNREPGGEK AGRPRPGPVG GVPGSCSEQY ELQPLARRRS PSFDTSTATS ENSTTRP00000010026/1-1397 AGTGEPGREK AGRQRPGPVG GAPGSCPEQY ELQPLARRRS PSFDTSTATS bmy_00639T0/1-1405 AGTGEPGGEK AGCQRPGPVG GAPGSCPEQY ELQPLARRRS PSFDTSTATS BACU008535/1-1317 AGTGEPGGEK AGRQRPGPVG GAPGSCPEQY ELQPLARRRS PSFDTSTATS 1201 1250 ENSP00000267889/1-1401 KLSHRPSVLS EDLQLHDGPC CSRPPPAPAS PRELLLDHQA VFSQCPALQT ENSBTAP00000000723/1-1403 KLSHRPSVLS EDLQLHDGPY CSRPPPGPAS PRELFLDHQA VFSQCPALQT ENSTTRP00000010026/1-1397 KLSHRPSVLS EDLQLHDGPC CSRLPPAPTS PREVFLDHQA LFSQCPALQT bmy_00639T0/1-1405 KLSHRPSVLS EDLQLHDGPC CSRLPPAPTS PRELFLDHQA LFSQCPALQT BACU008535/1-1317 KLSHRPSVLS EDLQLHDGPC CSRLPPAPTS PRELFLDHQA LFSQCPALQT 1251 1300 ENSP00000267889/1-1401 SSPYKQAGPS PKTRARQDSQ GEEAEPLPAS PEAPAHSPKA K--AADPPDG ENSBTAP00000000723/1-1403 SSPYKQAGPS PKTRARQNSP GKKAELVQAS LEAPAHPPRP KPQVVEPSDC ENSTTRP00000010026/1-1397 SSPYKQAGPS PKTRTRQDSQ GQKAEPVQAS PEAPAHSPKP KPQVAEPPEC bmy_00639T0/1-1405 SSPYKQAGPS PKTRARQDSQ GQKAEPVQAS PEAPACSPKP KPQVAEPPDC BACU008535/1-1317 SSPYKQAGLS PKTRARQDSQ GQKAEPLQAS PEAPACSPKP KPQVAEPPDC 1301 1350 ENSP00000267889/1-1401 FCSSASTLEG LSVSDETCLS TSEPSARVPD SVGVSPDDLD DTGQPVLERG ENSBTAP00000000723/1-1403 LCSSASTLEG LSVSDETCLS TSEPSARVPD SVGASPEDLD EAEQTVPERG ENSTTRP00000010026/1-1397 LCSSASTLEG LSVSDETCIS TSEPSARVPD SVGASPEDLD ETEQTVPERG bmy_00639T0/1-1405 LCSSASTLEG LSVSDETCLS TSEPSARVPD SVGASPEDLD ETEQTVPERG BACU008535/1-1317 LCSSASTLEG LSVSDETCLS TSEPSARVPD SVGASPEDLD ETEQTVPERG 1351 1400 ENSP00000267889/1-1401 QLNGKRDTLW LALRETVYDP SLPASHHSSL SWKGRGGPGD GSPVVLPNSQ ENSBTAP00000000723/1-1403 QLNEKRDTLW LALKETVYDP SLPTSHQSSL SWKGRGGPGD GSPVVLPNCQ ENSTTRP00000010026/1-1397 QLNGKRDTLW LALRETVYDP SLPASHQSSS SWKGRGGPGD GSPVVLPNSQ bmy_00639T0/1-1405 QLNGKRDTLW LALRETVYDP SLPASHQSSS SWKGRGGPGD GSPVMLPNSQ BACU008535/1-1317 QLNGKRDTLW LALRETVYDP SLPASHQSSS FWKGRGGPGD GSPVMLPNSQ 1401 1450 ENSP00000267889/1-1401 PDLPDVWLRR PSTHTSGYSS ENSBTAP00000000723/1-1403 PDLPDVWVRR PSTHTSGYSS ENSTTRP00000010026/1-1397 PDLPDVWVRR PSTHTSGYSS bmy_00639T0/1-1405 PDLPDVWVRR PSTHTSGYSS BACU008535/1-1317 PDLPDVWVRR PSTHTSGYSS