KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:12:01 2014 Check: 00 ..
Name: ENSTTRP00000015173/1-495 Len: 567 Check: 5006 Weight: 1.00
Name: bmy_06254T0/1-487 Len: 567 Check: 1979 Weight: 1.00
Name: BACU011374/1-496 Len: 567 Check: 109 Weight: 1.00
Name: ENSP00000417138/1-493 Len: 567 Check: 9749 Weight: 1.00
Name: ENSBTAP00000000732/1-510 Len: 567 Check: 9680 Weight: 1.00
//
1 50
ENSTTRP00000015173/1-495 ---------- ---------- ---------- ------MALF GALFLALLAG
bmy_06254T0/1-487 KLNDHGQPLF WLAIRGVGFR GPDDSRDPTP PPGPLAMALF GALFLALLAG
BACU011374/1-496 ---------- ---------- ---------- ------MALF GTLFLALLAG
ENSP00000417138/1-493 ---------- ---------- ---------- ------MALF GALFLALLAG
ENSBTAP00000000732/1-510 ---------- ---------- --MTPAIPTP SPGPLAMALF GALILALLAG
51 100
ENSTTRP00000015173/1-495 AQAELPGCKI RITSKALELV KQEGLRFLEQ ELETITIPDV RGREGHFYYN
bmy_06254T0/1-487 AQAELPGCKI RITSKALELV KQEGLRFLEQ ELETITIPDL RGREGHFYYN
BACU011374/1-496 AQAELPGCKI RITSTALELV KQEGLRFLEQ ELETITIPDL RGREGHFYYN
ENSP00000417138/1-493 AHAEFPGCKI RVTSKALELV KQEGLRFLEQ ELETITIPDL RGKEGHFYYN
ENSBTAP00000000732/1-510 AHAELPGCKI RITSKALELV KQEGLRFLEQ ELETVTIPDL RGSEGHFFYN
101 150
ENSTTRP00000015173/1-495 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG
bmy_06254T0/1-487 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG
BACU011374/1-496 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG
ENSP00000417138/1-493 ISEVKVTELQ LTSSELDFQP QQELMLQITN ASLGLRFRRQ LLYWFFYDGG
ENSBTAP00000000732/1-510 ISEVKVTELQ LTFSELHFQP DQELVLQINN ASWGLRFRRQ LLYWFFYDGG
151 200
ENSTTRP00000015173/1-495 YINASAEGVS IHTALQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV
bmy_06254T0/1-487 YINASAEGVS IHTALQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV
BACU011374/1-496 YINASAEGVS IHTSLQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV
ENSP00000417138/1-493 YINASAEGVS IRTGLELSRD PAGRMKVSNV SCQASVSRMH AAFGGTFKKV
ENSBTAP00000000732/1-510 YINASAEGVS IHTALQLSRD TIGRIKVSNV SCQASVSRMH AAFGGTLKKV
201 250
ENSTTRP00000015173/1-495 YEFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG
bmy_06254T0/1-487 YEFLSMFITS GMHFLLNQQ- ---------- ---------- ----------
BACU011374/1-496 YEFLSMFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG
ENSP00000417138/1-493 YDFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSSVDELVG
ENSBTAP00000000732/1-510 YEFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG
251 300
ENSTTRP00000015173/1-495 IDYSLVKDPV ASASSLDMEF RGAFFPLAEG NWSLHNRAVE PQLPEEERMV
bmy_06254T0/1-487 ---------- ---------- -GAFFPLADG NWSLRNQAVE PQLPEEERMV
BACU011374/1-496 IDYSLLKDPV ASASSLDMEF RGAFFPLADG NWSLRNQAVE PQLPXXERMV
ENSP00000417138/1-493 IDYSLMKDPV ASTSNLDMDF RGAFFPLTER NWSLPNRAVE PQLQEEERMV
ENSBTAP00000000732/1-510 IDYSLLKDPV ASTSNLDMEF RGAFYPLTEA NWSLSNRAVE PQLQEEERMV
301 350
ENSTTRP00000015173/1-495 YVAFSEFFFD SAMESYFQAG ALKLSLVGAK VPHDLDMLLR ATYFGNIILL
bmy_06254T0/1-487 YVAFSEFFFD SAMESYFRAG ALKLSLLGAK VPHDLDMLLR TTYFGNIVLL
BACU011374/1-496 YVAFSEFFFD SAMESYFRAG ALKLSLVGAK VPHDLDMLLR ATYFGNIVLL
ENSP00000417138/1-493 YVAFSEFFFD SAMESYFRAG ALQLLLVGDK VPHDLDMLLR ATYFGSIVLL
ENSBTAP00000000732/1-510 YVAFSEFFFD SAMESYFRAG ALKLSLVGDK VPHDLDMVLR ASYFGSIVLM
351 400
ENSTTRP00000015173/1-495 SPAVINSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVKL
bmy_06254T0/1-487 SPAEIDSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPNQPEVKL
BACU011374/1-496 SPAEIDSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVKL
ENSP00000417138/1-493 SPAVIDSPLK LELRVLAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVQL
ENSBTAP00000000732/1-510 SPAVIDSPLK LELRVMEPPR CTIKPSGTTV SVTASVTIAL VPPNQPEVQL
401 450
ENSTTRP00000015173/1-495 SSMTMDARLS AKMALQGKVL RTQLDLRRFR IYSNQSALES LA--------
bmy_06254T0/1-487 ---------- ---------- --------FR IYSNQSALES LAVSWEWGGG
BACU011374/1-496 SSMTMDVRLS AKMALRGKVL RTQLDLRRFR IYSNQSALES LA--------
ENSP00000417138/1-493 SSMTMDARLS AKMALRGKAL RTQLDLRRFR IYSNHSALES LA--------
ENSBTAP00000000732/1-510 SSMIMDARLS AKMALRGKAL RTQLDLRRFR IYSNQSALES LA--------
451 500
ENSTTRP00000015173/1-495 ---------- ---------- -------LIP LQTPLKTMLQ IGVMPMLNE-
bmy_06254T0/1-487 PGLGLRWAVK ASPPSTGCPD FLPPPSQLIP LQAPLKTMLQ IGVMPMLNER
BACU011374/1-496 ---------- ---------- -------LIP LQAPLKTMLQ IGVMPMLNER
ENSP00000417138/1-493 ---------- ---------- -------LIP LQAPLKTMLQ IGVMPMLNER
ENSBTAP00000000732/1-510 ---------- ---------- -------LIP LQTPLKTLLQ IAVMPMLNER
501 550
ENSTTRP00000015173/1-495 TWRGVQIPLP EGIDFVREVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPSN
bmy_06254T0/1-487 TWRGVQIPLP EGIDFVREVV TNHVGFLTIG ADLHFAKGLR EVIEKNRPAN
BACU011374/1-496 TWRGVQIPLP EGIDFVREVV TNHVGFLTIG ADLHFAKGLR EVIEKNRPAN
ENSP00000417138/1-493 TWRGVQIPLP EGINFVHEVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPA-
ENSBTAP00000000732/1-510 TWRGVQIPLP EGIDFVREVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPAD
551 600
ENSTTRP00000015173/1-495 TGDPLAPSAP PPSMAAV
bmy_06254T0/1-487 TRDPRAPSAP PPSMAAV
BACU011374/1-496 TRDSRAPSAP PPSMAAV
ENSP00000417138/1-493 --DVRASTAP TPSTAAV
ENSBTAP00000000732/1-510 TRDPRTSSAP PPSTAAV