KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:01 2014 Check: 00 .. Name: ENSTTRP00000015173/1-495 Len: 567 Check: 5006 Weight: 1.00 Name: bmy_06254T0/1-487 Len: 567 Check: 1979 Weight: 1.00 Name: BACU011374/1-496 Len: 567 Check: 109 Weight: 1.00 Name: ENSP00000417138/1-493 Len: 567 Check: 9749 Weight: 1.00 Name: ENSBTAP00000000732/1-510 Len: 567 Check: 9680 Weight: 1.00 // 1 50 ENSTTRP00000015173/1-495 ---------- ---------- ---------- ------MALF GALFLALLAG bmy_06254T0/1-487 KLNDHGQPLF WLAIRGVGFR GPDDSRDPTP PPGPLAMALF GALFLALLAG BACU011374/1-496 ---------- ---------- ---------- ------MALF GTLFLALLAG ENSP00000417138/1-493 ---------- ---------- ---------- ------MALF GALFLALLAG ENSBTAP00000000732/1-510 ---------- ---------- --MTPAIPTP SPGPLAMALF GALILALLAG 51 100 ENSTTRP00000015173/1-495 AQAELPGCKI RITSKALELV KQEGLRFLEQ ELETITIPDV RGREGHFYYN bmy_06254T0/1-487 AQAELPGCKI RITSKALELV KQEGLRFLEQ ELETITIPDL RGREGHFYYN BACU011374/1-496 AQAELPGCKI RITSTALELV KQEGLRFLEQ ELETITIPDL RGREGHFYYN ENSP00000417138/1-493 AHAEFPGCKI RVTSKALELV KQEGLRFLEQ ELETITIPDL RGKEGHFYYN ENSBTAP00000000732/1-510 AHAELPGCKI RITSKALELV KQEGLRFLEQ ELETVTIPDL RGSEGHFFYN 101 150 ENSTTRP00000015173/1-495 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG bmy_06254T0/1-487 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG BACU011374/1-496 ISEVKVMELQ LTSSELHFQP EQELMLQINN GSLGLRFRRQ LLYWFFYDGG ENSP00000417138/1-493 ISEVKVTELQ LTSSELDFQP QQELMLQITN ASLGLRFRRQ LLYWFFYDGG ENSBTAP00000000732/1-510 ISEVKVTELQ LTFSELHFQP DQELVLQINN ASWGLRFRRQ LLYWFFYDGG 151 200 ENSTTRP00000015173/1-495 YINASAEGVS IHTALQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV bmy_06254T0/1-487 YINASAEGVS IHTALQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV BACU011374/1-496 YINASAEGVS IHTSLQLSRD PTGRIKVSNV SCQASVSRMH AAFGGTFKKV ENSP00000417138/1-493 YINASAEGVS IRTGLELSRD PAGRMKVSNV SCQASVSRMH AAFGGTFKKV ENSBTAP00000000732/1-510 YINASAEGVS IHTALQLSRD TIGRIKVSNV SCQASVSRMH AAFGGTLKKV 201 250 ENSTTRP00000015173/1-495 YEFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG bmy_06254T0/1-487 YEFLSMFITS GMHFLLNQQ- ---------- ---------- ---------- BACU011374/1-496 YEFLSMFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG ENSP00000417138/1-493 YDFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSSVDELVG ENSBTAP00000000732/1-510 YEFLSTFITS GMRFLLNQQI CPVLYHAGTV LLNSLLDTVP VRSAVDELVG 251 300 ENSTTRP00000015173/1-495 IDYSLVKDPV ASASSLDMEF RGAFFPLAEG NWSLHNRAVE PQLPEEERMV bmy_06254T0/1-487 ---------- ---------- -GAFFPLADG NWSLRNQAVE PQLPEEERMV BACU011374/1-496 IDYSLLKDPV ASASSLDMEF RGAFFPLADG NWSLRNQAVE PQLPXXERMV ENSP00000417138/1-493 IDYSLMKDPV ASTSNLDMDF RGAFFPLTER NWSLPNRAVE PQLQEEERMV ENSBTAP00000000732/1-510 IDYSLLKDPV ASTSNLDMEF RGAFYPLTEA NWSLSNRAVE PQLQEEERMV 301 350 ENSTTRP00000015173/1-495 YVAFSEFFFD SAMESYFQAG ALKLSLVGAK VPHDLDMLLR ATYFGNIILL bmy_06254T0/1-487 YVAFSEFFFD SAMESYFRAG ALKLSLLGAK VPHDLDMLLR TTYFGNIVLL BACU011374/1-496 YVAFSEFFFD SAMESYFRAG ALKLSLVGAK VPHDLDMLLR ATYFGNIVLL ENSP00000417138/1-493 YVAFSEFFFD SAMESYFRAG ALQLLLVGDK VPHDLDMLLR ATYFGSIVLL ENSBTAP00000000732/1-510 YVAFSEFFFD SAMESYFRAG ALKLSLVGDK VPHDLDMVLR ASYFGSIVLM 351 400 ENSTTRP00000015173/1-495 SPAVINSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVKL bmy_06254T0/1-487 SPAEIDSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPNQPEVKL BACU011374/1-496 SPAEIDSPLK LELRVTAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVKL ENSP00000417138/1-493 SPAVIDSPLK LELRVLAPPR CTIKPSGTTI SVTASVTIAL VPPDQPEVQL ENSBTAP00000000732/1-510 SPAVIDSPLK LELRVMEPPR CTIKPSGTTV SVTASVTIAL VPPNQPEVQL 401 450 ENSTTRP00000015173/1-495 SSMTMDARLS AKMALQGKVL RTQLDLRRFR IYSNQSALES LA-------- bmy_06254T0/1-487 ---------- ---------- --------FR IYSNQSALES LAVSWEWGGG BACU011374/1-496 SSMTMDVRLS AKMALRGKVL RTQLDLRRFR IYSNQSALES LA-------- ENSP00000417138/1-493 SSMTMDARLS AKMALRGKAL RTQLDLRRFR IYSNHSALES LA-------- ENSBTAP00000000732/1-510 SSMIMDARLS AKMALRGKAL RTQLDLRRFR IYSNQSALES LA-------- 451 500 ENSTTRP00000015173/1-495 ---------- ---------- -------LIP LQTPLKTMLQ IGVMPMLNE- bmy_06254T0/1-487 PGLGLRWAVK ASPPSTGCPD FLPPPSQLIP LQAPLKTMLQ IGVMPMLNER BACU011374/1-496 ---------- ---------- -------LIP LQAPLKTMLQ IGVMPMLNER ENSP00000417138/1-493 ---------- ---------- -------LIP LQAPLKTMLQ IGVMPMLNER ENSBTAP00000000732/1-510 ---------- ---------- -------LIP LQTPLKTLLQ IAVMPMLNER 501 550 ENSTTRP00000015173/1-495 TWRGVQIPLP EGIDFVREVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPSN bmy_06254T0/1-487 TWRGVQIPLP EGIDFVREVV TNHVGFLTIG ADLHFAKGLR EVIEKNRPAN BACU011374/1-496 TWRGVQIPLP EGIDFVREVV TNHVGFLTIG ADLHFAKGLR EVIEKNRPAN ENSP00000417138/1-493 TWRGVQIPLP EGINFVHEVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPA- ENSBTAP00000000732/1-510 TWRGVQIPLP EGIDFVREVV TNHAGFLTIG ADLHFAKGLR EVIEKNRPAD 551 600 ENSTTRP00000015173/1-495 TGDPLAPSAP PPSMAAV bmy_06254T0/1-487 TRDPRAPSAP PPSMAAV BACU011374/1-496 TRDSRAPSAP PPSMAAV ENSP00000417138/1-493 --DVRASTAP TPSTAAV ENSBTAP00000000732/1-510 TRDPRTSSAP PPSTAAV