KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:12:01 2014 Check: 00 ..
Name: bmy_05159T0/1-259 Len: 259 Check: 8352 Weight: 1.00
Name: ENSTTRP00000002064/1-145 Len: 259 Check: 9031 Weight: 1.00
Name: ENSP00000355566/1-145 Len: 259 Check: 988 Weight: 1.00
Name: ENSBTAP00000000733/1-145 Len: 259 Check: 988 Weight: 1.00
Name: BACU002361/1-168 Len: 259 Check: 6808 Weight: 1.00
//
1 50
bmy_05159T0/1-259 MLADSQIDSG KAVGEVDCLR RSCPLESPGK RASVLSGGVC SEGPEPTASP
ENSTTRP00000002064/1-145 ---------- ---------- -------MVG RNSAIAAGVC G---------
ENSP00000355566/1-145 ---------- ---------- -------MVG RNSAIAAGVC G---------
ENSBTAP00000000733/1-145 ---------- ---------- -------MVG RNSAIAAGVC G---------
BACU002361/1-168 ----MKVGVR SEGSEPTASL RSLVGEKIEG RNSAISAGVC G---------
51 100
bmy_05159T0/1-259 RAPPPPTPLL VGEKMVGRNS AIAVFIGYCI YFDRKRRSDP NFKNRVRERG
ENSTTRP00000002064/1-145 ---------- ---------- --ALFIGYCI YFDRKRRSDP NFKNRLRERR
ENSP00000355566/1-145 ---------- ---------- --ALFIGYCI YFDRKRRSDP NFKNRLRERR
ENSBTAP00000000733/1-145 ---------- ---------- --ALFIGYCI YFDRKRRSDP NFKNRLRERR
BACU002361/1-168 ---------- ---------- --ALFIGSCI YFDHRRRSDP NFKNRLRERR
101 150
bmy_05159T0/1-259 KKQKLAKERA GLSKLPDLKD AEAVQKFFLE EIQLGEELLA QGEYEKGVDL
ENSTTRP00000002064/1-145 KKQKLAKERA GLSKLPDLKD AEAVQKFFLE EIQLGEELLA QGEYENGVDH
ENSP00000355566/1-145 KKQKLAKERA GLSKLPDLKD AEAVQKFFLE EIQLGEELLA QGEYEKGVDH
ENSBTAP00000000733/1-145 KKQKLAKERA GLSKLPDLKD AEAVQKFFLE EIQLGEELLA QGEYEKGVDH
BACU002361/1-168 KKQKLAKERA GLSKLPDLKD AEAVQKFFLE EIQLSEELLA QGEYEKGVDY
151 200
bmy_05159T0/1-259 LTNAIAVCGH PQQLLVVAGG KVFTGAASES FDTFSGMPAA HVEIHLQNRI
ENSTTRP00000002064/1-145 LTNAIAVXXX XXXXXXXXXX XX-------- ---------- ----------
ENSP00000355566/1-145 LTNAIAVCGQ PQQLLQVLQQ TL-------- ---------- ----------
ENSBTAP00000000733/1-145 LTNAIAVCGQ PQQLLQVLQQ TL-------- ---------- ----------
BACU002361/1-168 LTNAIAVCGQ PQQLLQVLQQ TV-------- ---------- ----------
201 250
bmy_05159T0/1-259 LLSLHKDGAL SAPEQLFPYG GRGSLHKHTW KSLIRDPKFA KILLFLSIFG
ENSTTRP00000002064/1-145 ---------- --XXXXX--- ---------X XXXXXXXXXX XRIVSAQSLA
ENSP00000355566/1-145 ---------- --PPPVF--- ---------Q MLLTKLPTIS QRIVSAQSLA
ENSBTAP00000000733/1-145 ---------- --PPPVF--- ---------Q MLLTKLPTIS QRIVSAQSLA
BACU002361/1-168 ---------- --PPPVF--- ---------Q RLLTKLPRTS QRILSAQSLA
251 300
bmy_05159T0/1-259 NNKVHVVQF
ENSTTRP00000002064/1-145 EDDVE----
ENSP00000355566/1-145 EDDVE----
ENSBTAP00000000733/1-145 EDDVE----
BACU002361/1-168 EDDVE----