KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:02 2014 Check: 00 .. Name: bmy_20408T0/1-1305 Len: 1463 Check: 8162 Weight: 1.00 Name: ENSP00000397644/1-1460 Len: 1463 Check: 4108 Weight: 1.00 Name: ENSBTAP00000000738/1-1461 Len: 1463 Check: 8938 Weight: 1.00 Name: BACU016383/1-290 Len: 1463 Check: 4805 Weight: 1.00 Name: ENSTTRP00000009535/1-1359 Len: 1463 Check: 8857 Weight: 1.00 // 1 50 bmy_20408T0/1-1305 ---------- ---------- ---------- ---------- ---------- ENSP00000397644/1-1460 MAEEQQQPPP QQPDAHQQLP PSAPNSGVAL PALVPGLPGT EASALQHKIK ENSBTAP00000000738/1-1461 MAEEQQQPPP QQPDAHQQLP PSAPNSGVAL PALVPGLPGT EASALQHRIK BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_20408T0/1-1305 ---------- ---------- ---------- ---------- -------MSY ENSP00000397644/1-1460 NSICKTVQSK VDCILQEVEK FTDLEKLYLY LQLPSGLSNG EKSDQNAMSS ENSBTAP00000000738/1-1461 NSICKTIQSK VDCILQEVEK FTDLEKLYLY LQLPSGLSNG EKSDQNAMSS BACU016383/1-290 ---------- ---------- ---------- ---------- -------MSS ENSTTRP00000009535/1-1359 ---------- ---------- ---------- ---------- -------MSS 101 150 bmy_20408T0/1-1305 CKFLLVKAVV LCTLRMKQA- ---------- ---ESYCDNL GYHPLSAADF ENSP00000397644/1-1460 SRAQQMHAFS WIRNTLEEHP ETSLPKQEVY DEYKSYCDNL GYHPLSAADF ENSBTAP00000000738/1-1461 SRAQQMHAFS WIRNTLEEHP ETSLPKQEVY DEYKSYCDNL GYHPLSAADF BACU016383/1-290 SRAQQMHAFS WIRNTLEEHP ETSLPKQEVY DEYKSYCDNL GYHPLSAADF ENSTTRP00000009535/1-1359 SRAQQMHAFS WIRNTLEEHT ETSLPKQEVY DEYKSYCDNL GYHPLSAADF 151 200 bmy_20408T0/1-1305 GKIMKN---- ---------- ---------- ---------- ---------- ENSP00000397644/1-1460 GKIMKNVFPN MKARRLGTRG KSKYCYSGLR KKAFVHMPTL PNLDFHKTGD ENSBTAP00000000738/1-1461 GKIMKNVFPN MKARRLGTRG KSKYCYSGLR KKAFVHMPTL PNLDFHKTGD BACU016383/1-290 GKIMKNVFPN MKARRLGTRG KSKYCYSGLR KKAFVHMPTL PNLDFHKTGD ENSTTRP00000009535/1-1359 GKIMKNVFPN MKARRLGTRG KSKYCYSGLR KKAFVHMPTL PNLDFHKTGD 201 250 bmy_20408T0/1-1305 -LEGAEPSGQ LQNIDEEVIT SACRLVCEWA QKVLSQPFDT VLELARFLVK ENSP00000397644/1-1460 GLEGAEPSGQ LQNIDEEVIS SACRLVCEWA QKVLSQPFDT VLELARFLVK ENSBTAP00000000738/1-1461 GLEGAEPSGQ LQNIDEEVIS SACRLVCEWA QKVLSQPFDT VLELARFLVK BACU016383/1-290 GLEGAEPSGQ LQNIDEEVIT SACRLVCEWA QKVLSQPFDT VLELARFLVK ENSTTRP00000009535/1-1359 GLEGAEPSGQ LQNIDEEVIT SACRLVCEWA QKVLSQPFDT VLELARFLVK 251 300 bmy_20408T0/1-1305 SHYIGTKSMA ALTVMAAAPP GIKGITQPSA FIPTAESNSF QPQVKTLPSP ENSP00000397644/1-1460 SHYIGTKSMA ALTVMAAAPA GMKGITQPSA FIPTAESNSF QPQVKTLPSP ENSBTAP00000000738/1-1461 SHYIGTKSMA ALTVMAAAPP GIKGITQPSA FIPTAESNSF QPQVKTLPSP BACU016383/1-290 SHYIGTKSMA ALTVMAAAPP GIKGITQPSA FIPTAESNSF QPQVKTLPSP ENSTTRP00000009535/1-1359 SHYIGTKSMA ALTVMAAAPP GIKGITQPSA FIPTAESNSF QPQVKTLPSP 301 350 bmy_20408T0/1-1305 IDAKQQLQRK IQKKQQEQKL QSPLPGESSA KKSEGATTNG VTSLSNGNPA ENSP00000397644/1-1460 IDAKQQLQRK IQKKQQEQKL QSPLPGESAA KKSESATSNG VTNLPNGNPS ENSBTAP00000000738/1-1461 IDAKQQLQRK IQKKQQEQKL QSPLPGESSA KKSEGSASNG VTNLSNGNPA BACU016383/1-290 IDAKQQLQRK IQKKQQEQKL QSPLPGESSA KKSEGATTNG VTSLSNGNPA ENSTTRP00000009535/1-1359 IDAKQQLQRK IQKKQQEQKL QSPLPGESSA KKSEGATTNG VTSLSNGNPA 351 400 bmy_20408T0/1-1305 ILSPQPIGIV VAAVPSPIPV QRTRQLVTSP SPMSSSDGKV LPLNVQVVTQ ENSP00000397644/1-1460 ILSPQPIGIV VAAVPSPIPV QRTRQLVTSP SPMSSSDGKV LPLNVQVVTQ ENSBTAP00000000738/1-1461 ILSPQPIGIV VAAVPSPIPV QRTRQLVTSP SPMSSSDGKV LPLNVQVVTQ BACU016383/1-290 ILSPQPIGIV VAAVPSPIP- ---------- ---------V ISLN------ ENSTTRP00000009535/1-1359 ILSPQPIGIV VAAVPSPIPV QRTRQLVTSP SPMSSSDGKV LPLNVQVVTQ 401 450 bmy_20408T0/1-1305 HMQSVKQAPK TPQHVPASPG GDRSARHRYP QILPKPANTS ALTIRSPTTV ENSP00000397644/1-1460 HMQSVKQAPK TPQNVPASPG GDRSARHRYP QILPKPANTS ALTIRSPTTV ENSBTAP00000000738/1-1461 HMQSVKQTPK TPQNVPASPG GDRSARHRYP QILPKPASTS ALTIRSPTTV BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 HMQSVKQAPK TPQHVPASPG GDRSARHRYP QILPKPANTS ALTIRSPTTV 451 500 bmy_20408T0/1-1305 LFTSSPIKTA VVPTSHVSSL NVVKMTAISL TPSNSSAPLK HSASVNSAAG ENSP00000397644/1-1460 LFTSSPIKTA VVPASHMSSL NVVKMTTISL TPSNSNTPLK HSASVSSATG ENSBTAP00000000738/1-1461 LFTSSPIKTA VVPTSHMSSL NVVKMTAISL TPSSSSTPLK HSASANSATG BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 LFTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 501 550 bmy_20408T0/1-1305 TTEESRTIPQ IKNGSVVSLQ SPGSRTSSTG GPSAVEVKME PEMSSDEHPV ENSP00000397644/1-1460 TTEESRSVPQ IKNGSVVSLQ SPGSRSSSAG GTSAVEVKVE PETSSDEHPV ENSBTAP00000000738/1-1461 TTEEARTIPQ IKNGSVVSLQ SPGSKTSSTG GPSAVEVKME PETSSDEPPI BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 551 600 bmy_20408T0/1-1305 QCQENSDGAD VPKTTPSALS GQKSNTEGVV QKPSNEGVIE IKATKVCDQR ENSP00000397644/1-1460 QCQENSDEAK APQT-PSALL GQKSNTDGAL QKPSNEGVIE IKATKVCDQR ENSBTAP00000000738/1-1461 QCQENSDGTD VPKTAPGALS GQKSNIDGAV QKPSNEGVVE IKATKVCDQR BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 bmy_20408T0/1-1305 TKCKNRCNEI LPGTSTGNNQ STITLSVATQ NLTFTSTSSP SNGDSINKDP ENSP00000397644/1-1460 TKCKSRCNEM LPGTSTGNNQ STITLSVASQ NLTFTSSSSP PNGDSINKDP ENSBTAP00000000738/1-1461 TKCKNRCNEI LPGTSTGNNQ STVTLSVATQ NFTFTSTSSP SNGDSINKDP BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 651 700 bmy_20408T0/1-1305 KLCTKSPRKR LSSALQESQV PPVKKPIVEQ LSAVISEGQK PGSVKKDQKV ENSP00000397644/1-1460 KLCTKSPRKR LSSTLQETQV PPVKKPIVEQ LSAATIEGQK QGSVKKDQKV ENSBTAP00000000738/1-1461 KVCTKSPRKR LSSAMQESQV PPIKKPIVEQ LSAVIPEGQK PGSVKKDPKV BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 KLCTKSPRKR LSSALQESQV PPVKKPIVEQ LSAVISEGQK PGSVKKDQKV 701 750 bmy_20408T0/1-1305 PHSGKTESSA AGSQIPSKVS TNVNSHVVAS QP--LKSSAL VTSDLASEQQ ENSP00000397644/1-1460 PHSGKTEGST AGAQIPSKVS VNVSSHIGAN QP--LNSSAL VISDSALEQQ ENSBTAP00000000738/1-1461 PHSGKTESSA AGAQISSKVS THVNSHIVAS QP--LDPSAL VTSDSALEQQ BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 PHSGRTESSA AGSQIPSKVS TNVNSHVVAS HPQQVNSSAL VTSDLASEQQ 751 800 bmy_20408T0/1-1305 TTPSSSPDIK VKLEGSVFLL DSDSKSHGSF NPNEWQQVTK DSEFISAGCE ENSP00000397644/1-1460 TTPSSSPDIK VKLEGSVFLL DSDSKSVGSF NPNGWQQITK DSEFISASCE ENSBTAP00000000738/1-1461 TTPSSSPDIK VKLEGSVFLL DNDSKSDGSF NPNEWQQVTK DSEFISASCE BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 TTPSSSPDIK VKLEGSVFLL DSDSKSHGSF NPNEWQQVTK DSEFLSAGCE 801 850 bmy_20408T0/1-1305 QQQDISVMTV PEHSDINDLE KSVWELEGMP QDTYSQQLHS QIQESSLSQL ENSP00000397644/1-1460 QQQDISVMTI PEHSDINDLE KSVWELEGMP QDTYSQQLHS QIQESSLNQI ENSBTAP00000000738/1-1461 QQQDISVMTI PEHSDINDLE KSVWELEGMP QDTYSQQLHG QIQESSLNQI BACU016383/1-290 ---------- ---------- -SIW------ ---------- ---------- ENSTTRP00000009535/1-1359 QQQDISVMTV PEHSDINDLE KSVWELEGMP QDTYSQQLHS QIQESSLSQM 851 900 bmy_20408T0/1-1305 QAQSSDQLPL QSELKEFEPS VSQANESYFP FDEELTQDSI VEELVLMEQQ ENSP00000397644/1-1460 QAHSSDQLPL QSELKEFEPS VSQTNESYFP FDDELTQDSI VEELVLMEQQ ENSBTAP00000000738/1-1461 QAQSSDQLPL QSELKEFEPS VSQTNESYFP FDDELTQDSI VEELVLMEQQ BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 QAQSSDQLPL QSELKEFEPS VSQANESYFP FDEELTQDSI VEELVLMEQQ 901 950 bmy_20408T0/1-1305 MSMNNSHAYG NCLGMTLQSQ SVTPGAPASS HAPSTHFYHP IRSNGTPIPT ENSP00000397644/1-1460 MSMNNSHSYG NCLGMTLQSQ SVTPGAPMSS HTSSTHFYHP IHSNGTPIHT ENSBTAP00000000738/1-1461 MSMNNSHSYG NCLGMTLQSQ SVTPGAPMSS HASSTHFYHP IHSNGTPIHT BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 MSMNNSHAYG NCLGMTLQSQ SVTPGAPASS HAPSTHFYHP IRSNGTPIPT 951 1000 bmy_20408T0/1-1305 PTPTPTPTPT PTPTPTPTSE VVAGSQSLSR ESPCSRLAQT TPVDSALGSS ENSP00000397644/1-1460 PTPTPTPTPT PTPTPTPTSE MIAGSQSLSR ESPCSRLAQT TPVDSALGSS ENSBTAP00000000738/1-1461 PTPTPTPTPT PTPTPTPTSE MIAGSQSLSR ESPCSRLAQT TPVDSALGSS BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 PTPTPTPTPT PTPTPTPTSE VVAGSQSLSR ESPCSRLAQT TPVDSALGSS 1001 1050 bmy_20408T0/1-1305 RHTPIGTPHS NCSSSVPPSP VECRNPFAFT PISSSMAYHD ASIVSSSPVK ENSP00000397644/1-1460 RHTPIGTPHS NCSSSVPPSP VECRNPFAFT PISSSMAYHD ASIVSSSPVK ENSBTAP00000000738/1-1461 RHTPIGTPHS NCSSSVPPSP VECRNPFAFT PISSSMAYHD ASIVSSSPVK BACU016383/1-290 -------PYW DCGKSVV--- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 RHTPIGTPHS NCSSSVPPSP VECRNPFAFT PISSSMAYHD ASIVSSSPVK 1051 1100 bmy_20408T0/1-1305 PMQRPMATHP DKTKLEWMNN GYSGVGNSSV SGHGILPSYQ ELVEDRFRKP ENSP00000397644/1-1460 PMQRPMATHP DKTKLEWMNN GYSGVGNSSV SGHGILPSYQ ELVEDRFRKP ENSBTAP00000000738/1-1461 PMQRPMATHP DKTKLEWMNN GYSGVGNSSV SGHGILPSYQ ELVEDRFRKP BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 PMQRPMATHP DKTKLEWMNN GYSGVGNSSV SGHGILPSYQ ELVEDRFRKP 1101 1150 bmy_20408T0/1-1305 HAFAVPGQSY QSQSRHHDTH FGRLTPVSPV QHQGATVSNT NKQEGFAVPA ENSP00000397644/1-1460 HAFAVPGQSY QSQSRHHDTN FGRLTPVSPV QHQGATVNNT NKQEGFAVPA ENSBTAP00000000738/1-1461 HAFAVPGQSY QSQSRHHDSH FCRLTPVSPV QHQGATVNNT NKQEGFAVPA BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 HAFAVPGQSY QSQSRHHDTH FGRLTPVSPV QHQGATVSNT NKQEGFAVPA 1151 1200 bmy_20408T0/1-1305 PLDNKGTNSS ASSNFRCRSV SPAVHRQRNL SGSTLYPVSN IPRSNVTPFG ENSP00000397644/1-1460 PLDNKGTNSS ASSNFRCRSV SPAVHRQRNL SGSTLYPVSN IPRSNVTPFG ENSBTAP00000000738/1-1461 PLDNKGTNSS ASSNFRCRSV SPAVHRQRNL SGSTLYPVSN IPRSNVTPFG BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 PLDNKGTNSS ASSNFRCRSV SPAVHRQRNL SG-TLYPVS- IPRSNVT-FG 1201 1250 bmy_20408T0/1-1305 SPVTPEVHVF TNVHTDACAN NIAQRSQSVP LTVMMQTAFP NALQKQTNSK ENSP00000397644/1-1460 SPVTPEVHVF TNVHTDACAN NIAQRSQSVP LTVMMQTAFP NALQKQANSK ENSBTAP00000000738/1-1461 SPVTPEVHVF TNVHTDACAN NIAQRSQSVP LTVMMQTAFP NALQKQTNSK BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 SP-NPEVHIT N--HTDACAN NIAQRSQSVP LTVMMQTAFP NALQKQTNSK 1251 1300 bmy_20408T0/1-1305 KITNVLLSKL DSDNDDAVRG LGMNNLPSNY TARMNLTQIL ETSTVFPSAN ENSP00000397644/1-1460 KITNVLLSKL DSDNDDAVRG LGMNNLPSNY TARMNLTQIL EPSTVFPSAN ENSBTAP00000000738/1-1461 KITNVLLSKL DSDNDDAVRG LGMNNLPSNY TARMNLTQIL ETSTVFPSAN BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 KITNVLLSKL DSDNDDAVRG LGMNNLPSNY TARMNLTQIL ETSTVFPSAN 1301 1350 bmy_20408T0/1-1305 PQNMIDSSTS IYEFQAPSYL TKSNSTDQIS FSPGDNQAQS EIGEQQLDFS ENSP00000397644/1-1460 PQNMIDSSTS VYEFQTPSYL TKSNSTGQIN FSPGDNQAQS EIGEQQLDFN ENSBTAP00000000738/1-1461 PQNMIDSSTS IYEFQAPSYL TKSNSTDQIS FSPGDNQAQS EIGEQQLDFS BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 PQNMIDSSTS IYEFQAPSYL TKSNSTDQIS FSPGDNQAQS EIGEQQLDFS 1351 1400 bmy_20408T0/1-1305 STVKDLLSGD SLQTNQQLVG QVASDLTNPA SDFSSDIRLS SELSGSINDL ENSP00000397644/1-1460 STVKDLLSGD SLQTNQQLVG QGASDLTNTA SDFSSDIRLS SELSGSINDL ENSBTAP00000000738/1-1461 STVKDLLSGD SLQTSQQLVG QVAPDLTNPA SDFSSDIRLS SELSGSINDL BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 STVKDLLSGD SLQTNQQLVG QVASDLTNPA SDFSSDIRLS SELSGSINDL 1401 1450 bmy_20408T0/1-1305 NALDPNLLFD PGRQQGQDDE ATLEELKNDP LFQQICSESM SSMTSSGFEW ENSP00000397644/1-1460 NTLDPNLLFD PGRQQGQDDE ATLEELKNDP LFQQICSESM NSMTSSGFEW ENSBTAP00000000738/1-1461 NTLDPNLLFD PGRQQGQDDE PTLEELKNDP LFQQICSDSM SSMTSSGFEW BACU016383/1-290 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009535/1-1359 NALDPNLLFD PGRQQGQDDE ATLEELKNDP LFQQICSESM SSMTSSGFEW 1451 1500 bmy_20408T0/1-1305 IESKDHPTVE MLG ENSP00000397644/1-1460 IESKDHPTVE MLG ENSBTAP00000000738/1-1461 IESKDHPTVE MLG BACU016383/1-290 ---------- --- ENSTTRP00000009535/1-1359 IESKDHPTVE MLG